FFCP PHASE1:Hg19::chr12:110888103..110888172,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10094 | |EntrezGene=10094 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=706 | |HGNC=706 | ||
|TSSclassifier=strong | |||
|UniProt=B4DM63,C9JZD1,O15145 | |UniProt=B4DM63,C9JZD1,O15145 | ||
|association_with_transcript=0bp_to_ENST00000392683,ENST00000426440,NM_005719,uc001tqq.2_5end | |association_with_transcript=0bp_to_ENST00000392683,ENST00000426440,NM_005719,uc001tqq.2_5end | ||
|cluster_id=chr12:110888103..110888172,- | |||
|coexpression_cluster_id=C299 | |||
|description=CAGE_peak_1_at_ARPC3_5end | |description=CAGE_peak_1_at_ARPC3_5end | ||
|id=chr12:110888103..110888172,- | |id=chr12:110888103..110888172,- | ||
|ontology_enrichment_celltype=CL:0000003!2.52e-36!722;CL:0000144!2.53e-36!625;CL:0000048!3.17e-36!430;CL:0000723!5.00e-36!436;CL:0002371!1.03e-35!591;CL:0000034!3.07e-35!444;CL:0000738!6.84e-35!140;CL:0000037!3.13e-34!172;CL:0000566!3.13e-34!172;CL:0000766!7.48e-33!76;CL:0002032!4.02e-32!165;CL:0000837!4.02e-32!165;CL:0000988!7.39e-32!182;CL:0002009!1.17e-30!65;CL:0000012!1.28e-30!682;CL:0002087!1.03e-29!119;CL:0002194!1.51e-29!63;CL:0000576!1.51e-29!63;CL:0000040!1.51e-29!63;CL:0000559!1.51e-29!63;CL:0000763!1.81e-29!112;CL:0000049!1.81e-29!112;CL:0000548!2.77e-29!679;CL:0000004!2.77e-29!679;CL:0000255!2.77e-29!679;CL:0002031!1.07e-28!124;CL:0000557!1.77e-27!71;CL:0000839!2.20e-27!70;CL:0000134!6.43e-27!358;CL:0002320!1.32e-26!365;CL:0002057!1.82e-25!42;CL:0000063!1.27e-23!578;CL:0000860!7.60e-22!45;CL:0000219!5.58e-19!390;CL:0002393!6.49e-07!9;CL:0002397!6.49e-07!9 | |ontology_enrichment_celltype=CL:0000003!2.52e-36!722;CL:0000144!2.53e-36!625;CL:0000048!3.17e-36!430;CL:0000723!5.00e-36!436;CL:0002371!1.03e-35!591;CL:0000034!3.07e-35!444;CL:0000738!6.84e-35!140;CL:0000037!3.13e-34!172;CL:0000566!3.13e-34!172;CL:0000766!7.48e-33!76;CL:0002032!4.02e-32!165;CL:0000837!4.02e-32!165;CL:0000988!7.39e-32!182;CL:0002009!1.17e-30!65;CL:0000012!1.28e-30!682;CL:0002087!1.03e-29!119;CL:0002194!1.51e-29!63;CL:0000576!1.51e-29!63;CL:0000040!1.51e-29!63;CL:0000559!1.51e-29!63;CL:0000763!1.81e-29!112;CL:0000049!1.81e-29!112;CL:0000548!2.77e-29!679;CL:0000004!2.77e-29!679;CL:0000255!2.77e-29!679;CL:0002031!1.07e-28!124;CL:0000557!1.77e-27!71;CL:0000839!2.20e-27!70;CL:0000134!6.43e-27!358;CL:0002320!1.32e-26!365;CL:0002057!1.82e-25!42;CL:0000063!1.27e-23!578;CL:0000860!7.60e-22!45;CL:0000219!5.58e-19!390;CL:0002393!6.49e-07!9;CL:0002397!6.49e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.75e-18;33!CL:0002057;3.75e-18;33!CL:0000473;4.24e-18;39!CL:0000234;4.24e-18;39!CL:0000576;5.28e-18;48!CL:0000766;3.70e-15;69!CL:0000763;1.76e-09;100!CL:0000738;2.20e-09;136!CL:0002087;1.32e-08;104!CL:0000236;7.28e-07;13!CL:0000219;9.48e-07;193 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,6.69e-37,136;CL:0000048,9.20e-37,427;CL:0000723,1.48e-36,433;CL:0000766,5.64e-36,72;CL:0000037,6.31e-36,168;CL:0000034,9.41e-36,441;CL:0002009,5.04e-34,61;CL:0002032,8.54e-34,161;CL:0000837,8.54e-34,161;CL:0000988,4.32e-33,177;CL:0002194,6.65e-33,59;CL:0000576,6.65e-33,59;CL:0000040,6.65e-33,59;CL:0000559,6.65e-33,59;CL:0002087,9.69e-32,115;CL:0000763,1.41e-31,108;CL:0000049,1.41e-31,108;CL:0002031,1.31e-30,120;CL:0000557,2.39e-30,67;CL:0000839,2.80e-30,66;CL:0000473,6.95e-29,48;CL:0000234,6.95e-29,48;CL:0000134,9.91e-28,354;CL:0002320,2.11e-27,361;CL:0000860,1.82e-25,42;CL:0002057,1.82e-25,42;CL:0000219,1.32e-19,386;CL:0002393,6.49e-07,9;CL:0002397,6.49e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;2.03e-18;42!CL:0000049;3.17e-09;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!6.10e-29!112;UBERON:0002390!1.56e-28!102;UBERON:0003061!1.56e-28!102;UBERON:0002371!1.36e-26!80;UBERON:0002384!2.22e-25!375;UBERON:0001474!9.39e-23!86;UBERON:0002204!1.18e-22!167;UBERON:0004765!6.76e-22!101;UBERON:0001434!6.76e-22!101;UBERON:0003081!2.57e-18!216;UBERON:0002405!3.65e-17!115 | |ontology_enrichment_uberon=UBERON:0002193!6.10e-29!112;UBERON:0002390!1.56e-28!102;UBERON:0003061!1.56e-28!102;UBERON:0002371!1.36e-26!80;UBERON:0002384!2.22e-25!375;UBERON:0001474!9.39e-23!86;UBERON:0002204!1.18e-22!167;UBERON:0004765!6.76e-22!101;UBERON:0001434!6.76e-22!101;UBERON:0003081!2.57e-18!216;UBERON:0002405!3.65e-17!115 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,5.07e-31,108;UBERON:0002390,9.53e-31,98;UBERON:0003061,9.53e-31,98;UBERON:0002371,3.91e-29,76;UBERON:0002405,7.11e-27,93;UBERON:0004765,2.35e-26,90;UBERON:0002384,3.85e-26,371;UBERON:0001474,6.96e-25,82;UBERON:0002204,1.36e-23,167;UBERON:0001434,1.39e-23,100;UBERON:0003081,1.16e-19,203;UBERON:0000926,2.49e-14,315;UBERON:0004120,2.49e-14,315;UBERON:0006603,2.49e-14,315 | |||
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2,281.380763440255,472.197389162662 | ||
|short_description=p1@ARPC3 | |short_description=p1@ARPC3 | ||
}} | }} |
Latest revision as of 08:30, 16 September 2015
Short description: | p1@ARPC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ARPC3_5end |
Coexpression cluster: | C299_CD14CD16_Eosinophils_Neutrophils_CD14_Whole_Basophils_blood |
Association with transcript: | 0bp_to_ENST00000392683, ENST00000426440, NM_005719, uc001tqq.2_5end |
EntrezGene: | ARPC3 |
HGNC: | 706 |
UniProt: | B4DM63C9JZD1O15145 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 6.69e-37 | 136 |
multi fate stem cell | 9.20e-37 | 427 |
somatic stem cell | 1.48e-36 | 433 |
myeloid leukocyte | 5.64e-36 | 72 |
hematopoietic stem cell | 6.31e-36 | 168 |
stem cell | 9.41e-36 | 441 |
macrophage dendritic cell progenitor | 5.04e-34 | 61 |
hematopoietic oligopotent progenitor cell | 8.54e-34 | 161 |
hematopoietic multipotent progenitor cell | 8.54e-34 | 161 |
hematopoietic cell | 4.32e-33 | 177 |
monopoietic cell | 6.65e-33 | 59 |
monocyte | 6.65e-33 | 59 |
monoblast | 6.65e-33 | 59 |
promonocyte | 6.65e-33 | 59 |
nongranular leukocyte | 9.69e-32 | 115 |
myeloid cell | 1.41e-31 | 108 |
common myeloid progenitor | 1.41e-31 | 108 |
hematopoietic lineage restricted progenitor cell | 1.31e-30 | 120 |
granulocyte monocyte progenitor cell | 2.39e-30 | 67 |
myeloid lineage restricted progenitor cell | 2.80e-30 | 66 |
defensive cell | 6.95e-29 | 48 |
phagocyte | 6.95e-29 | 48 |
mesenchymal cell | 9.91e-28 | 354 |
connective tissue cell | 2.11e-27 | 361 |
classical monocyte | 1.82e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.82e-25 | 42 |
motile cell | 1.32e-19 | 386 |
intermediate monocyte | 6.49e-07 | 9 |
CD14-positive, CD16-positive monocyte | 6.49e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 5.07e-31 | 108 |
hematopoietic system | 9.53e-31 | 98 |
blood island | 9.53e-31 | 98 |
bone marrow | 3.91e-29 | 76 |
immune system | 7.11e-27 | 93 |
skeletal element | 2.35e-26 | 90 |
connective tissue | 3.85e-26 | 371 |
bone element | 6.96e-25 | 82 |
musculoskeletal system | 1.36e-23 | 167 |
skeletal system | 1.39e-23 | 100 |
lateral plate mesoderm | 1.16e-19 | 203 |
mesoderm | 2.49e-14 | 315 |
mesoderm-derived structure | 2.49e-14 | 315 |
presumptive mesoderm | 2.49e-14 | 315 |