FFCP PHASE1:Hg19::chr17:42083411..42083424,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:42083411..42083424,+
|short_description=p3@NAGS
|description=CAGE_peak_3_at_NAGS_5end
|association_with_transcript=19bp_to_uc002iet.2_5end
|EntrezGene=16...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=162417 | |EntrezGene=162417 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17996 | |HGNC=17996 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=19bp_to_uc002iet.2_5end | |||
|cluster_id=chr17:42083411..42083424,+ | |||
|description=CAGE_peak_3_at_NAGS_5end | |||
|id=chr17:42083411..42083424,+ | |||
|ontology_enrichment_celltype=CL:0002368!4.27e-10!13;CL:0000066!3.72e-08!254;CL:0002076!6.27e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0002368;8.56e-23;13!CL:0002202;4.12e-15;9!CL:0002632;4.12e-15;9!CL:0002328;5.26e-12;3!CL:0002553;4.85e-10;1!CL:0000244;3.16e-09;4!CL:0000731;3.16e-09;4!CL:0002076;1.29e-07;42!CL:0002322;1.50e-07;5!CL:0000082;2.54e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,4.49e-23,13;CL:0002202,2.86e-15,9;CL:0002632,2.86e-15,9;CL:0002328,2.03e-12,3;CL:0002553,4.46e-10,1;CL:0000244,2.79e-09,4;CL:0000731,2.79e-09,4;CL:0002076,3.47e-09,42;CL:0000066,1.06e-08,253;CL:0002322,1.66e-07,5;CL:0000082,1.91e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0007123;1.50e-07;5 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3112;1.25e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,1.36e-09,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;5.26e-12;3!UBERON:0002031;5.26e-12;3!UBERON:0007196;3.86e-09;15!UBERON:0001558;3.86e-09;15!UBERON:0002046;1.50e-07;5!UBERON:0000365;1.50e-07;5!UBERON:0002185;1.50e-07;5!UBERON:0004802;2.54e-07;19!UBERON:0000115;2.54e-07;19!UBERON:0005911;3.47e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,2.03e-12,3;UBERON:0002031,2.03e-12,3;UBERON:0007196,3.12e-09,15;UBERON:0001558,3.12e-09,15;UBERON:0002185,8.53e-08,5;UBERON:0002046,1.27e-07,5;UBERON:0004117,1.27e-07,5;UBERON:0007689,1.27e-07,5;UBERON:0007123,1.27e-07,5;UBERON:0003091,1.27e-07,5;UBERON:0000365,1.36e-07,5;UBERON:0004802,1.91e-07,19;UBERON:0000115,1.91e-07,19;UBERON:0000065,5.80e-07,54 | |||
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| ||
|short_description=p3@NAGS | |||
}} | }} |
Latest revision as of 19:16, 24 September 2015
Short description: | p3@NAGS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NAGS_5end |
Coexpression cluster: | NA |
Association with transcript: | 19bp_to_uc002iet.2_5end |
EntrezGene: | NAGS |
HGNC: | 17996 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 4.49e-23 | 13 |
epithelial cell of tracheobronchial tree | 2.86e-15 | 9 |
epithelial cell of lower respiratory tract | 2.86e-15 | 9 |
bronchial epithelial cell | 2.03e-12 | 3 |
lung fibroblast | 4.46e-10 | 1 |
transitional epithelial cell | 2.79e-09 | 4 |
urothelial cell | 2.79e-09 | 4 |
endo-epithelial cell | 3.47e-09 | 42 |
epithelial cell | 1.06e-08 | 253 |
embryonic stem cell | 1.66e-07 | 5 |
epithelial cell of lung | 1.91e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 2.03e-12 | 3 |
epithelium of bronchus | 2.03e-12 | 3 |
tracheobronchial tree | 3.12e-09 | 15 |
lower respiratory tract | 3.12e-09 | 15 |
bronchus | 8.53e-08 | 5 |
thyroid gland | 1.27e-07 | 5 |
pharyngeal pouch | 1.27e-07 | 5 |
thyroid diverticulum | 1.27e-07 | 5 |
pharyngeal pouch 2 | 1.27e-07 | 5 |
thyroid primordium | 1.27e-07 | 5 |
urothelium | 1.36e-07 | 5 |
respiratory tract epithelium | 1.91e-07 | 19 |
lung epithelium | 1.91e-07 | 19 |
respiratory tract | 5.80e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 1.36e-09 | 1 |