FFCP PHASE1:Hg19::chr3:122746628..122746635,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54437 | |EntrezGene=54437 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10737 | |HGNC=10737 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-15bp_to_ENST00000465147_5end | |association_with_transcript=-15bp_to_ENST00000465147_5end | ||
|cluster_id=chr3:122746628..122746635,- | |||
|coexpression_cluster_id=C4274 | |||
|description=CAGE_peak_8_at_SEMA5B_5end | |description=CAGE_peak_8_at_SEMA5B_5end | ||
|id=chr3:122746628..122746635,- | |id=chr3:122746628..122746635,- | ||
|ontology_enrichment_celltype=CL:0000047!7.22e-25!8;CL:0000540!1.17e-18!6;CL:0000031!1.17e-18!6;CL:0000404!1.17e-18!6;CL:0002322!7.95e-16!5;CL:0002319!2.54e-14!25;CL:0000133!7.53e-14!59;CL:0000221!8.63e-11!71;CL:0002605!1.04e-09!3;CL:0000128!3.09e-07!7;CL:0000126!3.09e-07!7;CL:0000127!3.09e-07!7;CL:0002453!3.09e-07!7 | |ontology_enrichment_celltype=CL:0000047!7.22e-25!8;CL:0000540!1.17e-18!6;CL:0000031!1.17e-18!6;CL:0000404!1.17e-18!6;CL:0002322!7.95e-16!5;CL:0002319!2.54e-14!25;CL:0000133!7.53e-14!59;CL:0000221!8.63e-11!71;CL:0002605!1.04e-09!3;CL:0000128!3.09e-07!7;CL:0000126!3.09e-07!7;CL:0000127!3.09e-07!7;CL:0002453!3.09e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0000047;5.14e-50;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.65e-13,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!3.71e-11!10;DOID:3095!4.20e-10!22;DOID:2994!4.20e-10!22;DOID:169!1.51e-08!6 | |ontology_enrichment_disease=DOID:171!3.71e-11!10;DOID:3095!4.20e-10!22;DOID:2994!4.20e-10!22;DOID:169!1.51e-08!6 | ||
|ontology_enrichment_disease_v019=DOID:171;5.13e-23;10!DOID:3095;1.74e-18;22!DOID:2994;1.74e-18;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,5.53e-23,10;DOID:3095,1.99e-18,22;DOID:2994,1.99e-18,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!6.37e-36!94;UBERON:0001016!6.37e-36!94;UBERON:0001017!3.03e-33!82;UBERON:0005743!2.54e-31!86;UBERON:0000956!7.81e-26!25;UBERON:0000203!7.81e-26!25;UBERON:0001869!5.60e-25!32;UBERON:0002780!2.67e-23!41;UBERON:0001890!2.67e-23!41;UBERON:0006240!2.67e-23!41;UBERON:0001893!2.77e-23!34;UBERON:0003080!1.23e-22!42;UBERON:0002791!2.66e-21!33;UBERON:0002020!1.44e-20!34;UBERON:0003528!1.44e-20!34;UBERON:0001049!2.18e-19!57;UBERON:0005068!2.18e-19!57;UBERON:0006241!2.18e-19!57;UBERON:0007135!2.18e-19!57;UBERON:0002619!2.91e-19!22;UBERON:0002616!1.49e-18!59;UBERON:0000955!3.27e-18!69;UBERON:0006238!3.27e-18!69;UBERON:0001950!4.23e-18!20;UBERON:0000924!7.14e-18!173;UBERON:0006601!7.14e-18!173;UBERON:0004121!5.41e-16!169;UBERON:0002346!1.16e-15!90;UBERON:0003056!3.87e-14!61;UBERON:0003075!1.46e-13!86;UBERON:0007284!1.46e-13!86;UBERON:0000013!2.94e-10!5;UBERON:0002410!2.94e-10!5;UBERON:0002021!3.66e-10!5;UBERON:0000153!4.97e-08!129;UBERON:0007811!4.97e-08!129;UBERON:0000033!8.06e-08!123 | |ontology_enrichment_uberon=UBERON:0000073!6.37e-36!94;UBERON:0001016!6.37e-36!94;UBERON:0001017!3.03e-33!82;UBERON:0005743!2.54e-31!86;UBERON:0000956!7.81e-26!25;UBERON:0000203!7.81e-26!25;UBERON:0001869!5.60e-25!32;UBERON:0002780!2.67e-23!41;UBERON:0001890!2.67e-23!41;UBERON:0006240!2.67e-23!41;UBERON:0001893!2.77e-23!34;UBERON:0003080!1.23e-22!42;UBERON:0002791!2.66e-21!33;UBERON:0002020!1.44e-20!34;UBERON:0003528!1.44e-20!34;UBERON:0001049!2.18e-19!57;UBERON:0005068!2.18e-19!57;UBERON:0006241!2.18e-19!57;UBERON:0007135!2.18e-19!57;UBERON:0002619!2.91e-19!22;UBERON:0002616!1.49e-18!59;UBERON:0000955!3.27e-18!69;UBERON:0006238!3.27e-18!69;UBERON:0001950!4.23e-18!20;UBERON:0000924!7.14e-18!173;UBERON:0006601!7.14e-18!173;UBERON:0004121!5.41e-16!169;UBERON:0002346!1.16e-15!90;UBERON:0003056!3.87e-14!61;UBERON:0003075!1.46e-13!86;UBERON:0007284!1.46e-13!86;UBERON:0000013!2.94e-10!5;UBERON:0002410!2.94e-10!5;UBERON:0002021!3.66e-10!5;UBERON:0000153!4.97e-08!129;UBERON:0007811!4.97e-08!129;UBERON:0000033!8.06e-08!123 | ||
|ontology_enrichment_uberon_v019=UBERON:0002346;7.63e-26;4!UBERON:0000923;7.63e-26;4!UBERON:0010316;7.63e-26;4!UBERON:0005291;7.63e-26;4!UBERON:0002050;6.64e-21;5!UBERON:0005423;6.64e-21;5!UBERON:0000922;2.13e-09;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,5.71e-07,171;UBERON:0000924,5.71e-07,171;UBERON:0006601,5.71e-07,171;UBERON:0001016,5.89e-07,89 | |||
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| ||
|short_description=p8@SEMA5B | |short_description=p8@SEMA5B | ||
}} | }} |
Latest revision as of 00:38, 20 September 2015
Short description: | p8@SEMA5B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SEMA5B_5end |
Coexpression cluster: | C4274_neuroectodermal_neuroepithelioma_neuroblastoma_Astrocyte_peripheral_Neural_parietal |
Association with transcript: | -15bp_to_ENST00000465147_5end |
EntrezGene: | SEMA5B |
HGNC: | 10737 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.65e-13 | 8 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 5.71e-07 | 171 |
ectoderm | 5.71e-07 | 171 |
presumptive ectoderm | 5.71e-07 | 171 |
nervous system | 5.89e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 5.53e-23 | 10 |
germ cell and embryonal cancer | 1.99e-18 | 22 |
germ cell cancer | 1.99e-18 | 22 |