FFCP PHASE1:Hg19::chr17:3704456..3704468,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:3704456..3704468,-
|short_description=p3@ITGAE
|description=CAGE_peak_3_at_ITGAE_5end
|association_with_transcript=68bp_to_ENST00000263087,NM_002208,uc002...") |
No edit summary |
||
(13 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3682 | |EntrezGene=3682 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6147 | |HGNC=6147 | ||
|TSSclassifier=strong | |||
|UniProt=P38570 | |UniProt=P38570 | ||
|association_with_transcript=68bp_to_ENST00000263087,NM_002208,uc002fwo.3_5end | |||
|cluster_id=chr17:3704456..3704468,- | |||
|coexpression_cluster_id=C54 | |||
|description=CAGE_peak_3_at_ITGAE_5end | |||
|id=chr17:3704456..3704468,- | |||
|ontology_enrichment_celltype=CL:0002009!1.46e-25!65;CL:0002194!4.07e-25!63;CL:0000576!4.07e-25!63;CL:0000040!4.07e-25!63;CL:0000559!4.07e-25!63;CL:0000557!3.77e-24!71;CL:0000738!8.85e-22!140;CL:0000839!1.49e-21!70;CL:0000766!1.45e-20!76;CL:0002087!2.04e-19!119;CL:0000037!1.55e-18!172;CL:0000566!1.55e-18!172;CL:0002031!3.92e-18!124;CL:0002057!7.87e-18!42;CL:0000763!1.28e-17!112;CL:0000049!1.28e-17!112;CL:0000988!1.24e-16!182;CL:0002032!2.19e-16!165;CL:0000837!2.19e-16!165;CL:0000860!3.66e-16!45;CL:0000451!9.67e-13!10;CL:0000990!5.09e-10!8 | |||
|ontology_enrichment_celltype_v019=CL:0000473;7.53e-12;39!CL:0000234;7.53e-12;39!CL:0000990;8.03e-12;8!CL:0000840;1.31e-10;5!CL:0000235;3.12e-10;6!CL:0000451;1.09e-09;10!CL:0000860;3.01e-08;33!CL:0002057;3.01e-08;33!CL:0002032;2.04e-07;1!CL:0000557;2.04e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,5.21e-18,59;CL:0000576,5.21e-18,59;CL:0000040,5.21e-18,59;CL:0000559,5.21e-18,59;CL:0000557,5.92e-18,67;CL:0002009,2.45e-17,61;CL:0000766,1.30e-16,72;CL:0000839,7.81e-16,66;CL:0000763,3.82e-15,108;CL:0000049,3.82e-15,108;CL:0000990,7.00e-12,8;CL:0000473,2.37e-11,48;CL:0000234,2.37e-11,48;CL:0000840,1.31e-10,5;CL:0001029,1.31e-10,5;CL:0002032,3.00e-10,161;CL:0000837,3.00e-10,161;CL:0000235,3.71e-10,6;CL:0000738,5.94e-10,136;CL:0000451,9.71e-10,10;CL:0000037,1.15e-09,168;CL:0002087,2.46e-09,115;CL:0000988,5.55e-09,177;CL:0002031,7.93e-09,120 | |||
|ontology_enrichment_development_v019=UBERON:0001045;1.01e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.55e-23!102;UBERON:0003061!1.55e-23!102;UBERON:0002193!8.27e-23!112;UBERON:0002405!9.06e-23!115;UBERON:0002371!1.65e-21!80;UBERON:0001474!3.16e-19!86;UBERON:0004765!9.46e-15!101;UBERON:0001434!9.46e-15!101;UBERON:0003081!1.07e-08!216;UBERON:0002204!9.45e-08!167;UBERON:0007023!7.49e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002171;4.88e-08;1!UBERON:0006518;4.88e-08;1!UBERON:0008949;4.88e-08;1!UBERON:0000101;4.88e-08;1!UBERON:0002167;4.88e-08;1!UBERON:0001154;1.01e-07;1!UBERON:0001153;1.01e-07;1!UBERON:0009854;1.01e-07;1!UBERON:0002372;2.04e-07;1!UBERON:0001961;2.04e-07;1!UBERON:0001744;2.04e-07;1!UBERON:0001042;2.04e-07;1!UBERON:0001735;2.04e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,7.11e-16,93;UBERON:0002371,1.69e-15,76;UBERON:0001474,3.69e-14,82;UBERON:0002193,3.27e-13,108;UBERON:0002390,4.37e-13,98;UBERON:0003061,4.37e-13,98;UBERON:0004765,1.20e-12,90;UBERON:0001434,4.26e-11,100;UBERON:0002171,4.89e-08,1;UBERON:0006518,4.89e-08,1;UBERON:0008949,4.89e-08,1;UBERON:0000101,4.89e-08,1;UBERON:0002167,4.89e-08,1;UBERON:0001154,8.84e-08,1;UBERON:0001153,8.84e-08,1;UBERON:0001045,8.84e-08,1;UBERON:0002372,3.17e-07,1;UBERON:0001961,3.17e-07,1;UBERON:0001744,3.17e-07,1;UBERON:0001735,3.17e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0.447830948479849,7.44955431843653,0.257575567634187,0.581592955118259,2.26725566213286,2.66842467306598,0.232429036905685,2.87817521615278,0.619412741790207,0.28769239232215,1.0246428261164,0.236482229888585,0,0,0,0.752969358170419,3.82068610080984,1.34834090667051,0,0.641858054152187,0.639337125799041,0.329851300186716,0.598390972864896,0.426224750532694,0.290209238628584,0,0.622822248995575,0,1.5644487552606,0.434377689410233,0,0.368277635987565,0,0,0,0,0.112328631146495,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0.205601498999509,0,0.651844533267181,0,0,0,0.883817722424512,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0.802320587350522,0.144824403882799,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.916853528483988,0,0,26.612886279684,26.6418498067879,9.30705723632056,0,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0.355009592516614,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,7.02012795417713,1.0404181360211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,10.5416969741516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0.79312517629427,0,0,0,0,0,6.18934037131203,0,0,2.2980644415884,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75809815126273,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0.19924798825107,2.76283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,1.41532103205343,0.611030144933625,0,0,0,0,0,0,0,0,0,0,2.41981432097328,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0,0,1.27746588066972,0,0.788662062837943,0.279282401272254,0,0,0,0,0,0,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0,0,1.06787412567695,0,13.2556497711103,0.992332043623902,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0,0,0,0,0,0,0,0,0,0,0,0,0,0.53168342911599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.974301544196942,1.59437808376036,0.817826971279221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,1.61364054962816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0.62041277132864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31522474323834,1.5299169235277,0,0.490296643507811,0,0,0.297046400327086,0,0,0.0939839179798536,0.128915775947154,0,0,0,0,0.730336388246517,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0661699095049,0,0.258355639344024,1.30356900021302,0,0.0636471582781649,0,0.217716747896961,0,1.01028079521881,0.143444410785353,0,0,0,0,0,0,0,0,0.665756774185513,0.805095174364105,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0.447830948479849,7.44955431843653,0.257575567634187,0.581592955118259,2.26725566213286,2.66842467306598,0.232429036905685,2.87817521615278,0.619412741790207,0.28769239232215,1.0246428261164,0.236482229888585,0,0,0,0.752969358170419,3.82068610080984,1.34834090667051,0,0.641858054152187,0.639337125799041,0.329851300186716,0.598390972864896,0.426224750532694,0.290209238628584,0,0.622822248995575,0,1.5644487552606,0.434377689410233,0,0.368277635987565,0,0,0,0,0.112328631146495,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0.205601498999509,0,0.651844533267181,0,0,0,0.883817722424512,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0.802320587350522,0.144824403882799,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.916853528483988,0,0,26.612886279684,26.6418498067879,9.30705723632056,0,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0.355009592516614,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,7.02012795417713,1.0404181360211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,10.5416969741516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0.79312517629427,0,0,0,0,0,6.18934037131203,0,0,2.2980644415884,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75809815126273,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0.19924798825107,2.76283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,1.41532103205343,0.611030144933625,0,0,0,0,0,0,0,0,0,0,2.41981432097328,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0,0,1.27746588066972,0,0.788662062837943,0.279282401272254,0,0,0,0,0,0,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0,0,1.06787412567695,0,13.2556497711103,0.992332043623902,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0,0,0,0,0,0,0,0,0,0,0,0,0,0.53168342911599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.974301544196942,1.59437808376036,0.817826971279221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,1.61364054962816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0.62041277132864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31522474323834,1.5299169235277,0,0.490296643507811,0,0,0.297046400327086,0,0,0.0939839179798536,0.128915775947154,0,0,0,0,0.730336388246517,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0661699095049,0,0.258355639344024,1.30356900021302,0,0.0636471582781649,0,0.217716747896961,0,1.01028079521881,0.143444410785353,0,0,0,0,0,0,0,0,0.665756774185513,0.805095174364105,0 | ||
|short_description=p3@ITGAE | |||
}} | }} |
Latest revision as of 20:46, 19 September 2015
Short description: | p3@ITGAE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ITGAE_5end |
Coexpression cluster: | C54_Dendritic_Macrophage_Monocytederived_CD14_leiomyoma_adipose_immature |
Association with transcript: | 68bp_to_ENST00000263087, NM_002208, uc002fwo.3_5end |
EntrezGene: | ITGAE |
HGNC: | 6147 |
UniProt: | P38570 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 5.21e-18 | 59 |
monocyte | 5.21e-18 | 59 |
monoblast | 5.21e-18 | 59 |
promonocyte | 5.21e-18 | 59 |
granulocyte monocyte progenitor cell | 5.92e-18 | 67 |
macrophage dendritic cell progenitor | 2.45e-17 | 61 |
myeloid leukocyte | 1.30e-16 | 72 |
myeloid lineage restricted progenitor cell | 7.81e-16 | 66 |
myeloid cell | 3.82e-15 | 108 |
common myeloid progenitor | 3.82e-15 | 108 |
conventional dendritic cell | 7.00e-12 | 8 |
defensive cell | 2.37e-11 | 48 |
phagocyte | 2.37e-11 | 48 |
immature conventional dendritic cell | 1.31e-10 | 5 |
common dendritic progenitor | 1.31e-10 | 5 |
hematopoietic oligopotent progenitor cell | 3.00e-10 | 161 |
hematopoietic multipotent progenitor cell | 3.00e-10 | 161 |
macrophage | 3.71e-10 | 6 |
leukocyte | 5.94e-10 | 136 |
dendritic cell | 9.71e-10 | 10 |
hematopoietic stem cell | 1.15e-09 | 168 |
nongranular leukocyte | 2.46e-09 | 115 |
hematopoietic cell | 5.55e-09 | 177 |
hematopoietic lineage restricted progenitor cell | 7.93e-09 | 120 |
Ontology term | p-value | n |
---|---|---|
immune system | 7.11e-16 | 93 |
bone marrow | 1.69e-15 | 76 |
bone element | 3.69e-14 | 82 |
hemolymphoid system | 3.27e-13 | 108 |
hematopoietic system | 4.37e-13 | 98 |
blood island | 4.37e-13 | 98 |
skeletal element | 1.20e-12 | 90 |
skeletal system | 4.26e-11 | 100 |
lower lobe of right lung | 4.89e-08 | 1 |
right lung lobe | 4.89e-08 | 1 |
lower lobe of lung | 4.89e-08 | 1 |
lobe of lung | 4.89e-08 | 1 |
right lung | 4.89e-08 | 1 |
vermiform appendix | 8.84e-08 | 1 |
caecum | 8.84e-08 | 1 |
midgut | 8.84e-08 | 1 |
tonsil | 3.17e-07 | 1 |
mucosa-associated lymphoid tissue | 3.17e-07 | 1 |
lymphoid tissue | 3.17e-07 | 1 |
tonsillar ring | 3.17e-07 | 1 |