FFCP PHASE1:Hg19::chr17:63511856..63511858,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:63511856..63511858,- | |||
|coexpression_cluster_id=C221 | |||
|description=CAGE_peak_at_chr17:63511856..63511858,- | |description=CAGE_peak_at_chr17:63511856..63511858,- | ||
|id=chr17:63511856..63511858,- | |id=chr17:63511856..63511858,- | ||
|ontology_enrichment_celltype=CL:0000039!1.51e-16!7;CL:0000586!1.51e-16!7;CL:0002253!1.36e-07!2;CL:0002097!1.45e-07!2 | |ontology_enrichment_celltype=CL:0000039!1.51e-16!7;CL:0000586!1.51e-16!7;CL:0002253!1.36e-07!2;CL:0002097!1.45e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000322;2.39e-66;3!CL:0002202;2.62e-23;9!CL:0002632;2.62e-23;9!CL:0002368;1.21e-16;13!CL:0000082;6.95e-12;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,2.39e-66,3;CL:0002202,2.62e-23,9;CL:0002632,2.62e-23,9;CL:0002368,1.21e-16,13;CL:0000082,6.95e-12,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.67e-08;29!UBERON:0001041;4.53e-08;30 | |||
|ontology_enrichment_disease=DOID:4929!2.37e-25!2;DOID:305!1.98e-15!106;DOID:3095!4.29e-14!22;DOID:2994!4.29e-14!22;DOID:0050619!5.15e-14!1;DOID:1357!5.15e-14!1;DOID:2355!2.07e-13!1;DOID:0050687!3.95e-13!143;DOID:162!4.11e-10!235;DOID:14566!7.29e-10!239;DOID:170!3.71e-09!6;DOID:3119!1.18e-08!14;DOID:1325!2.78e-08!7;DOID:3904!2.78e-08!7;DOID:299!3.23e-08!25;DOID:0050686!8.16e-08!137;DOID:0050615!9.15e-08!16;DOID:3910!9.25e-08!2;DOID:3493!1.05e-07!2;DOID:74!2.40e-07!2 | |ontology_enrichment_disease=DOID:4929!2.37e-25!2;DOID:305!1.98e-15!106;DOID:3095!4.29e-14!22;DOID:2994!4.29e-14!22;DOID:0050619!5.15e-14!1;DOID:1357!5.15e-14!1;DOID:2355!2.07e-13!1;DOID:0050687!3.95e-13!143;DOID:162!4.11e-10!235;DOID:14566!7.29e-10!239;DOID:170!3.71e-09!6;DOID:3119!1.18e-08!14;DOID:1325!2.78e-08!7;DOID:3904!2.78e-08!7;DOID:299!3.23e-08!25;DOID:0050686!8.16e-08!137;DOID:0050615!9.15e-08!16;DOID:3910!9.25e-08!2;DOID:3493!1.05e-07!2;DOID:74!2.40e-07!2 | ||
|ontology_enrichment_disease_v019=DOID:3910;1.55e-98;2!DOID:3908;1.48e-40;5!DOID:1325;1.78e-29;7!DOID:3904;1.78e-29;7!DOID:3905;2.62e-23;9!DOID:1324;1.22e-14;15!DOID:0050615;8.02e-14;16 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,1.55e-98,2;DOID:3908,1.48e-40,5;DOID:1325,1.78e-29,7;DOID:3904,1.78e-29,7;DOID:3905,2.62e-23,9;DOID:1324,1.22e-14,15;DOID:0050615,8.02e-14,16 | |||
|ontology_enrichment_uberon=UBERON:0001764!5.15e-14!1;UBERON:0001825!5.15e-14!1;UBERON:0004913!1.10e-13!1;UBERON:0003703!1.10e-13!1;UBERON:0001174!1.10e-13!1;UBERON:0004914!1.10e-13!1;UBERON:0004903!9.25e-08!2;UBERON:0002173!9.25e-08!2;UBERON:0002186!9.25e-08!2;UBERON:0000473!4.41e-07!8 | |ontology_enrichment_uberon=UBERON:0001764!5.15e-14!1;UBERON:0001825!5.15e-14!1;UBERON:0004913!1.10e-13!1;UBERON:0003703!1.10e-13!1;UBERON:0001174!1.10e-13!1;UBERON:0004914!1.10e-13!1;UBERON:0004903!9.25e-08!2;UBERON:0002173!9.25e-08!2;UBERON:0002186!9.25e-08!2;UBERON:0000473!4.41e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;1.55e-98;2!UBERON:0002173;1.55e-98;2!UBERON:0002186;1.55e-98;2!UBERON:0004821;2.39e-66;3!UBERON:0007499;2.39e-66;3!UBERON:0003215;2.39e-66;3!UBERON:0010368;2.39e-66;3!UBERON:0009911;2.39e-66;3!UBERON:0002299;2.39e-66;3!UBERON:0006524;2.39e-66;3!UBERON:0008874;2.39e-66;3!UBERON:0002169;2.39e-66;3!UBERON:0004894;2.39e-66;3!UBERON:0009856;3.10e-50;4!UBERON:0000058;3.81e-21;10!UBERON:0007196;1.22e-14;15!UBERON:0001558;1.22e-14;15!UBERON:0004802;6.95e-12;19!UBERON:0000115;6.95e-12;19!UBERON:0002048;1.80e-10;22!UBERON:0000487;1.80e-10;22!UBERON:0004807;1.80e-10;22!UBERON:0000117;1.80e-10;22!UBERON:0000171;1.80e-10;22!UBERON:0000170;1.80e-10;22!UBERON:0006914;2.15e-09;25!UBERON:0000490;4.53e-08;33!UBERON:0005178;2.32e-07;34!UBERON:0000065;2.32e-07;44!UBERON:0002224;2.32e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.55e-98,2;UBERON:0002173,1.55e-98,2;UBERON:0002186,1.55e-98,2;UBERON:0004821,2.39e-66,3;UBERON:0003215,2.39e-66,3;UBERON:0010368,2.39e-66,3;UBERON:0009911,2.39e-66,3;UBERON:0002299,2.39e-66,3;UBERON:0006524,2.39e-66,3;UBERON:0008874,2.39e-66,3;UBERON:0002169,2.39e-66,3;UBERON:0004894,2.39e-66,3;UBERON:0007196,1.22e-14,15;UBERON:0001558,1.22e-14,15;UBERON:0000058,6.95e-12,19;UBERON:0004802,6.95e-12,19;UBERON:0000115,6.95e-12,19;UBERON:0002048,1.80e-10,22;UBERON:0000487,1.80e-10,22;UBERON:0000117,1.80e-10,22;UBERON:0000171,1.80e-10,22;UBERON:0000170,1.80e-10,22;UBERON:0005597,1.80e-10,22;UBERON:0000118,1.80e-10,22;UBERON:0007499,2.15e-09,25;UBERON:0006914,2.15e-09,25;UBERON:0009856,4.34e-09,26;UBERON:0004807,1.52e-08,28;UBERON:0005178,2.74e-07,34;UBERON:0002224,2.74e-07,34;UBERON:0005181,4.03e-07,35;UBERON:0005153,8.21e-07,37 | |||
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|short_description=p@chr17:63511856..63511858,- | |short_description=p@chr17:63511856..63511858,- | ||
}} | }} |
Latest revision as of 19:59, 25 July 2015
Short description: | p@chr17:63511856..63511858, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:63511856..63511858, - |
Coexpression cluster: | C221_alveolar_Osteoblast_Myoblast_mesenchymal_liposarcoma_Smooth_hepatocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 2.39e-66 | 3 |
epithelial cell of tracheobronchial tree | 2.62e-23 | 9 |
epithelial cell of lower respiratory tract | 2.62e-23 | 9 |
respiratory epithelial cell | 1.21e-16 | 13 |
epithelial cell of lung | 6.95e-12 | 19 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 1.55e-98 | 2 |
alveolar duct | 1.55e-98 | 2 |
bronchiole | 1.55e-98 | 2 |
pulmonary alveolus epithelium | 2.39e-66 | 3 |
alveolus | 2.39e-66 | 3 |
pulmonary lobule | 2.39e-66 | 3 |
lobule | 2.39e-66 | 3 |
alveolus of lung | 2.39e-66 | 3 |
alveolar system | 2.39e-66 | 3 |
pulmonary acinus | 2.39e-66 | 3 |
alveolar sac | 2.39e-66 | 3 |
alveolar wall | 2.39e-66 | 3 |
tracheobronchial tree | 1.22e-14 | 15 |
lower respiratory tract | 1.22e-14 | 15 |
duct | 6.95e-12 | 19 |
respiratory tract epithelium | 6.95e-12 | 19 |
lung epithelium | 6.95e-12 | 19 |
lung | 1.80e-10 | 22 |
simple squamous epithelium | 1.80e-10 | 22 |
respiratory tube | 1.80e-10 | 22 |
respiration organ | 1.80e-10 | 22 |
pair of lungs | 1.80e-10 | 22 |
lung primordium | 1.80e-10 | 22 |
lung bud | 1.80e-10 | 22 |
epithelial sac | 2.15e-09 | 25 |
squamous epithelium | 2.15e-09 | 25 |
sac | 4.34e-09 | 26 |
respiratory system epithelium | 1.52e-08 | 28 |
thoracic cavity element | 2.74e-07 | 34 |
thoracic cavity | 2.74e-07 | 34 |
thoracic segment organ | 4.03e-07 | 35 |
epithelial bud | 8.21e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 1.55e-98 | 2 |
non-small cell lung carcinoma | 1.48e-40 | 5 |
bronchus cancer | 1.78e-29 | 7 |
bronchogenic carcinoma | 1.78e-29 | 7 |
lung carcinoma | 2.62e-23 | 9 |
lung cancer | 1.22e-14 | 15 |
respiratory system cancer | 8.02e-14 | 16 |