FFCP PHASE1:Hg19::chr17:48278983..48278999,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt=P02452 | |UniProt=P02452 | ||
|association_with_transcript=0bp_to_ENST00000225964,ENST00000474644,NM_000088,uc002iqm.2_5end | |association_with_transcript=0bp_to_ENST00000225964,ENST00000474644,NM_000088,uc002iqm.2_5end | ||
|cluster_id=chr17:48278983..48278999,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_1_at_COL1A1_5end | |description=CAGE_peak_1_at_COL1A1_5end | ||
|id=chr17:48278983..48278999,- | |id=chr17:48278983..48278999,- | ||
|ontology_enrichment_celltype=CL:0000055!1.63e-40!180;CL:0000057!3.41e-23!75;CL:0000183!5.88e-17!59;CL:0000680!2.19e-16!57;CL:0000056!2.19e-16!57;CL:0000355!2.19e-16!57;CL:0000187!8.05e-16!54;CL:0000393!8.69e-15!60;CL:0000211!8.69e-15!60;CL:0000192!2.16e-12!42;CL:0000514!2.16e-12!42;CL:0000222!2.34e-09!119;CL:0000359!5.76e-09!32;CL:0002620!7.18e-09!23 | |ontology_enrichment_celltype=CL:0000055!1.63e-40!180;CL:0000057!3.41e-23!75;CL:0000183!5.88e-17!59;CL:0000680!2.19e-16!57;CL:0000056!2.19e-16!57;CL:0000355!2.19e-16!57;CL:0000187!8.05e-16!54;CL:0000393!8.69e-15!60;CL:0000211!8.69e-15!60;CL:0000192!2.16e-12!42;CL:0000514!2.16e-12!42;CL:0000222!2.34e-09!119;CL:0000359!5.76e-09!32;CL:0002620!7.18e-09!23 | ||
|ontology_enrichment_celltype_v019=CL:0000187;9.45e-10;55!CL:0000057;1.02e-09;73!CL:0000192;1.32e-09;43!CL:0000134;1.35e-09;55!CL:0002620;4.35e-09;23!CL:0000723;7.61e-09;61!CL:0000359;9.71e-09;32!CL:0000048;1.03e-08;58!CL:0000393;1.61e-08;61!CL:0000211;1.61e-08;61!CL:0002320;1.97e-08;188!CL:0000499;7.54e-07;28!CL:0002494;9.03e-07;16!CL:0002334;9.61e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.05e-24,76;CL:0000680,2.60e-17,58;CL:0000056,2.60e-17,58;CL:0000355,2.60e-17,58;CL:0000187,9.96e-17,55;CL:0000393,1.20e-15,61;CL:0000211,1.20e-15,61;CL:0000192,3.47e-13,43;CL:0000514,3.47e-13,43;CL:0000222,1.45e-09,121;CL:0000359,3.46e-09,32;CL:0002620,4.34e-09,23;CL:0000499,7.64e-07,28;CL:0002494,9.01e-07,16;CL:0002334,9.62e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;1.32e-09;43!CL:0000355;1.56e-09;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.17e-21!83;UBERON:0002329!6.17e-21!83;UBERON:0003077!6.17e-21!83;UBERON:0003059!6.17e-21!83;UBERON:0007282!6.17e-21!83;UBERON:0009618!6.17e-21!83;UBERON:0007285!6.17e-21!83;UBERON:0005256!1.39e-18!143;UBERON:0004290!2.02e-18!70;UBERON:0001134!3.44e-17!61;UBERON:0002036!3.44e-17!61;UBERON:0003082!3.44e-17!61;UBERON:0002385!4.06e-17!63;UBERON:0001015!4.06e-17!63;UBERON:0000383!4.06e-17!63;UBERON:0000475!4.11e-17!365;UBERON:0000486!9.09e-17!82;UBERON:0000481!3.62e-13!347;UBERON:0002100!1.23e-12!216;UBERON:0000468!1.99e-12!659;UBERON:0000119!1.70e-09!312;UBERON:0004872!3.28e-09!84;UBERON:0000483!5.29e-09!309;UBERON:0003104!6.99e-09!238;UBERON:0009142!6.99e-09!238;UBERON:0000490!8.32e-09!138;UBERON:0003102!1.43e-08!95;UBERON:0000467!5.40e-08!625;UBERON:0003914!5.82e-08!118;UBERON:0000480!6.86e-08!626;UBERON:0000948!4.32e-07!24;UBERON:0005498!4.32e-07!24;UBERON:0004140!4.32e-07!24;UBERON:0009881!4.32e-07!24;UBERON:0004141!4.32e-07!24;UBERON:0003084!4.32e-07!24;UBERON:0007005!4.32e-07!24;UBERON:0004139!4.32e-07!24;UBERON:0004291!4.32e-07!24;UBERON:0002049!5.58e-07!79;UBERON:0007798!5.58e-07!79;UBERON:0002199!5.92e-07!45;UBERON:0002416!5.92e-07!45;UBERON:0007100!7.83e-07!27 | |ontology_enrichment_uberon=UBERON:0000914!6.17e-21!83;UBERON:0002329!6.17e-21!83;UBERON:0003077!6.17e-21!83;UBERON:0003059!6.17e-21!83;UBERON:0007282!6.17e-21!83;UBERON:0009618!6.17e-21!83;UBERON:0007285!6.17e-21!83;UBERON:0005256!1.39e-18!143;UBERON:0004290!2.02e-18!70;UBERON:0001134!3.44e-17!61;UBERON:0002036!3.44e-17!61;UBERON:0003082!3.44e-17!61;UBERON:0002385!4.06e-17!63;UBERON:0001015!4.06e-17!63;UBERON:0000383!4.06e-17!63;UBERON:0000475!4.11e-17!365;UBERON:0000486!9.09e-17!82;UBERON:0000481!3.62e-13!347;UBERON:0002100!1.23e-12!216;UBERON:0000468!1.99e-12!659;UBERON:0000119!1.70e-09!312;UBERON:0004872!3.28e-09!84;UBERON:0000483!5.29e-09!309;UBERON:0003104!6.99e-09!238;UBERON:0009142!6.99e-09!238;UBERON:0000490!8.32e-09!138;UBERON:0003102!1.43e-08!95;UBERON:0000467!5.40e-08!625;UBERON:0003914!5.82e-08!118;UBERON:0000480!6.86e-08!626;UBERON:0000948!4.32e-07!24;UBERON:0005498!4.32e-07!24;UBERON:0004140!4.32e-07!24;UBERON:0009881!4.32e-07!24;UBERON:0004141!4.32e-07!24;UBERON:0003084!4.32e-07!24;UBERON:0007005!4.32e-07!24;UBERON:0004139!4.32e-07!24;UBERON:0004291!4.32e-07!24;UBERON:0002049!5.58e-07!79;UBERON:0007798!5.58e-07!79;UBERON:0002199!5.92e-07!45;UBERON:0002416!5.92e-07!45;UBERON:0007100!7.83e-07!27 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.14e-08;198!UBERON:0002385;3.78e-08;31!UBERON:0001015;3.78e-08;31!UBERON:0000383;3.78e-08;31!UBERON:0002204;6.84e-07;70 | |||
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|phase1_expression=5799.71890145398,4582.6076133626,9010.79219064315,6415.69915741919,10016.8450872099,5747.83853529733,7750.9762719503,433.359833170806,306.370741878411,404.478059481484,223.994174919149,624.087000175902,4905.80202807101,1019.09215027302,4452.65514028028,1293.55358177322,1061.94775837825,1406.57723408608,1029.53820544797,2204.48254486489,5519.64670299575,5186.42182157644,315.145821831293,310.020572790083,1042.75716447443,0.152826811495903,0.246301768349837,0,0,0,369.855718602106,8.27479102031034,24.09647350226,12.9413903558376,0,0,0,40.4416648228271,0,1.95309783644267,0,0,0,0.145398238779565,0,0,0,0,0,0,1.2808035326455,0,0,0,0,0.188242339542605,0,0,0.612167784741805,0,0,0,0,0,0,0,0,0,0,0,432.255244880225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0.263384084775077,0,0,2.2616164889946,0,0,0,0,0,0,0,0,0.384273959177026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434473211648397,8628.3249988511,3140.89212599213,4077.53709719018,4471.00231499708,8335.2441022323,3732.98448665835,7439.10474871598,8447.49471358346,737.749713148386,2519.73287276458,2347.56031722018,222.140512044121,6.19301990097322,6.67411997011973,0,0,3.98873881556595,0,0,0,0.39752481473341,145.379646572935,0,0,0.419499436209906,0,2.71693456497854,0,19.9229107104558,31.1290169871143,0,0.760272105718513,34.4127501142919,0,26.7346842800981,0.446498641420399,2.91888184414021,0.900891843866578,0,0,61.5557859606168,0,0,33.5792420149751,22074.003178451,3126.38070248681,3197.28448909679,26133.1108431829,4570.25677300803,5018.06452127365,5186.93370250637,8747.81793706616,2633.15657051742,2480.69702616331,1447.45515206968,6214.43326424559,15025.5157585894,904.246405446621,350.24360620362,277.249305270602,478.833572487971,541.842776742331,623.696454650411,631.466826933309,1005.25513925909,587.025202432939,1450.69396770775,11568.7718242126,12914.751716219,3596.95770237908,8948.2331018958,548.10238703444,1080.14818205467,688.781391093679,10276.4661048204,8146.13912454214,13775.6280972637,1315.01929937412,9938.90337570571,8441.71002260915,6095.79727305248,17225.5290063408,4833.98804151669,10794.8809873718,5783.58131050415,13936.1993058258,5782.39907129133,7817.87398834023,6650.88132660205,5464.76824287357,17364.5841987652,3243.81455453711,2082.03451298048,25.5104326175552,141.282490466052,8.03052867089211,53.4244832847628,28.3613704207978,99.4620150963077,231.371474794307,84.2751641924599,40.877464216493,4277.33021389717,3462.5659702923,1346.81548318669,1186.46005612171,1773.65788646217,0.236613600079688,0,0,0.110293972732394,0,0,1.21348177344148,0,0,92.269431828081,6152.40661675717,11362.323730826,25663.3107465741,7.60530208930985,2.94848165003288,123.475090496413,0,0.491953754172454,1201.31780771028,18.1087970924232,3.37205259772859,1.00528972411631,10.5550827480724,740.562277970368,2169.3039620932,584.541935202357,210.877406649665,14562.6699808459,39.8451395820564,8.33373922637899,0,0,0,0.738651018262192,1.17002132569619,2.22946743433092,97.4831873462481,377.791806319235,47.0693322844723,0.179117045405697,0,57.1240191956165,0.985326475791887,0,47.6854665743776,26.9504312889718,36.1053359599447,18.9223724990664,0,0,995.641635852144,185.089486865982,0.300343057843917,0,1560.30403866569,4336.49480468464,884.753080143941,5977.91195178692,10028.6867416868,3601.83502864112,4280.27398643349,4877.94879114307,1812.79757379958,3078.12616490514,2313.61020257581,4337.9523275882,26356.2166170732,7025.53303408708,2175.59197489786,5423.63652975999,3031.59176958917,516.96853165719,1282.02571760103,513.861174675773,1.2162378064119,0,0,6616.52150983358,19910.1679574853,2982.53768440142,1613.73244411684,1759.90470264403,1000.59266258454,0,0,0.215627574859517,0,57.6794796984992,40.3433546958627,54.1302168944387,78.5651284418096,57.4144876487847,0,0,0,1441.37964471646,1569.53509508527,2105.01658390995,20598.8899220419,12388.3246921869,11028.9183953982,13353.3013192644,9050.35205711169,4286.63145145532,3087.63644736835,3675.16023669657,8819.29917719237,1131.57219483231,5660.61146224783,12546.6961482201,0.206768026122887,0,0.106727557803444,311.312015875308,4946.46126225197,4420.94608847993,9314.95953674816,15181.2257075216,17048.4167762426,12850.3064439587,7434.59462169013,19801.9219623838,9906.90593520315,1838.17955012765,4827.37062608799,1105.18513847783,1424.31489925067,1996.95914345594,0.362578348774867,81.2051204728304,1.19705285616665,3300.22649804346,3063.68390171301,3154.06667743399,26.6207771615373,9.70393247515626,454.922866122576,122.756948708739,26.8101137387904,76.2013673275007,2.89159298970077,1181.49189291091,623.078100868769,1332.78552627821,3466.17464756318,3.82314409567557,14.1282921517883,192.308414306351,0,0,8.71930425395723,306.037664437825,46.8544888316596,130.140797711073,969.354354566983,655.125429369469,544.977995558368,221.020483652417,4515.21842862088,695.932500984986,1192.18224785023,1962.23747402411,1732.74355270303,2008.65115879185,3397.0160549408,1706.06662761551,6643.12533978131,97.848669893699,408.98046335294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| ||
|short_description=p1@COL1A1 | |short_description=p1@COL1A1 | ||
}} | }} |
Latest revision as of 01:33, 16 September 2015
Short description: | p1@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 0bp_to_ENST00000225964, ENST00000474644, NM_000088, uc002iqm.2_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.05e-24 | 76 |
muscle precursor cell | 2.60e-17 | 58 |
myoblast | 2.60e-17 | 58 |
multi-potent skeletal muscle stem cell | 2.60e-17 | 58 |
muscle cell | 9.96e-17 | 55 |
electrically responsive cell | 1.20e-15 | 61 |
electrically active cell | 1.20e-15 | 61 |
smooth muscle cell | 3.47e-13 | 43 |
smooth muscle myoblast | 3.47e-13 | 43 |
mesodermal cell | 1.45e-09 | 121 |
vascular associated smooth muscle cell | 3.46e-09 | 32 |
skin fibroblast | 4.34e-09 | 23 |
stromal cell | 7.64e-07 | 28 |
cardiocyte | 9.01e-07 | 16 |
preadipocyte | 9.62e-07 | 12 |