FFCP PHASE1:Hg19::chr17:2240775..2240812,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:2240775..2240812,+
|short_description=p1@SGSM2
|description=CAGE_peak_1_at_SGSM2_5end
|association_with_transcript=0bp_to_ENST00000268989,ENST00000426855,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9905 | |EntrezGene=9905 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29026 | |HGNC=29026 | ||
|TSSclassifier=strong | |||
|UniProt=O43147,B9A6J3 | |UniProt=O43147,B9A6J3 | ||
|association_with_transcript=0bp_to_ENST00000268989,ENST00000426855,NM_001098509,NM_014853,uc002fum.3,uc002fun.3,uc010vqw.1_5end | |||
|cluster_id=chr17:2240775..2240812,+ | |||
|description=CAGE_peak_1_at_SGSM2_5end | |||
|id=chr17:2240775..2240812,+ | |||
|ontology_enrichment_celltype=CL:0000791!3.99e-07!18;CL:0000789!3.99e-07!18;CL:0002420!3.99e-07!18;CL:0002419!3.99e-07!18;CL:0000790!3.99e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.36e-07;18!CL:0000789;4.36e-07;18!CL:0002419;4.36e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.99e-07,18;CL:0000789,3.99e-07,18;CL:0002420,3.99e-07,18;CL:0002419,3.99e-07,18;CL:0000790,3.99e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;4.36e-07;18!UBERON:0006601;5.67e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.03e-25!57;UBERON:0005068!2.03e-25!57;UBERON:0006241!2.03e-25!57;UBERON:0007135!2.03e-25!57;UBERON:0005743!1.12e-24!86;UBERON:0000073!2.96e-24!94;UBERON:0001016!2.96e-24!94;UBERON:0001017!4.25e-24!82;UBERON:0002616!8.55e-23!59;UBERON:0000955!2.08e-22!69;UBERON:0006238!2.08e-22!69;UBERON:0007023!2.31e-22!115;UBERON:0002780!6.63e-22!41;UBERON:0001890!6.63e-22!41;UBERON:0006240!6.63e-22!41;UBERON:0003080!3.24e-21!42;UBERON:0003075!1.26e-20!86;UBERON:0007284!1.26e-20!86;UBERON:0002346!1.80e-20!90;UBERON:0002020!2.74e-18!34;UBERON:0003528!2.74e-18!34;UBERON:0001893!5.01e-18!34;UBERON:0001869!1.07e-17!32;UBERON:0002791!1.89e-17!33;UBERON:0003056!2.06e-16!61;UBERON:0002619!1.19e-13!22;UBERON:0000956!1.30e-13!25;UBERON:0000203!1.30e-13!25;UBERON:0001950!2.47e-12!20;UBERON:0000153!4.27e-11!129;UBERON:0007811!4.27e-11!129;UBERON:0000924!7.98e-11!173;UBERON:0006601!7.98e-11!173;UBERON:0004121!1.14e-10!169;UBERON:0000033!2.70e-10!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;5.32e-16;32!UBERON:0003528;6.31e-16;34!UBERON:0002020;6.31e-16;34!UBERON:0002780;6.50e-16;41!UBERON:0001890;6.50e-16;41!UBERON:0001893;9.00e-16;34!UBERON:0002791;1.36e-15;32!UBERON:0000073;1.98e-14;53!UBERON:0002616;1.98e-14;53!UBERON:0002619;1.16e-13;22!UBERON:0000956;1.17e-13;25!UBERON:0000203;1.17e-13;25!UBERON:0001950;2.42e-12;20!UBERON:0001017;3.63e-11;75!UBERON:0000955;1.03e-10;68!UBERON:0001016;2.79e-09;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,4.83e-26,56;UBERON:0005068,4.83e-26,56;UBERON:0006241,4.83e-26,56;UBERON:0007135,4.83e-26,56;UBERON:0000073,9.44e-25,53;UBERON:0002616,9.44e-25,53;UBERON:0001017,1.56e-24,81;UBERON:0001016,4.97e-24,89;UBERON:0000955,7.03e-23,68;UBERON:0006238,7.03e-23,68;UBERON:0002780,6.63e-22,41;UBERON:0001890,6.63e-22,41;UBERON:0003080,6.63e-22,41;UBERON:0006240,6.63e-22,41;UBERON:0007023,8.30e-22,114;UBERON:0003075,2.77e-21,82;UBERON:0007284,2.77e-21,82;UBERON:0002346,4.39e-21,86;UBERON:0003528,2.74e-18,34;UBERON:0002020,2.74e-18,34;UBERON:0001893,5.01e-18,34;UBERON:0001869,1.07e-17,32;UBERON:0003056,2.44e-17,61;UBERON:0002791,3.55e-17,32;UBERON:0002619,1.19e-13,22;UBERON:0000956,1.30e-13,25;UBERON:0000203,1.30e-13,25;UBERON:0001950,2.47e-12,20;UBERON:0010371,4.29e-12,104;UBERON:0004121,1.29e-10,171;UBERON:0000924,1.29e-10,171;UBERON:0006601,1.29e-10,171;UBERON:0010314,1.08e-07,132;UBERON:0011216,3.20e-07,223 | |||
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| ||
|short_description=p1@SGSM2 | |||
}} | }} |
Latest revision as of 02:59, 19 September 2015
Short description: | p1@SGSM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SGSM2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000268989, ENST00000426855, NM_001098509, NM_014853, uc002fum.3, uc002fun.3, uc010vqw.1_5end |
EntrezGene: | SGSM2 |
HGNC: | 29026 |
UniProt: | O43147B9A6J3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.99e-07 | 18 |
alpha-beta T cell | 3.99e-07 | 18 |
immature T cell | 3.99e-07 | 18 |
mature T cell | 3.99e-07 | 18 |
immature alpha-beta T cell | 3.99e-07 | 18 |