FFCP PHASE1:Hg19::chr9:131675002..131675013,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56262 | |EntrezGene=56262 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19027 | |HGNC=19027 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-9bp_to_ENST00000492784_5end | |association_with_transcript=-9bp_to_ENST00000492784_5end | ||
|cluster_id=chr9:131675002..131675013,+ | |||
|description=CAGE_peak_29_at_LRRC8A_5end | |description=CAGE_peak_29_at_LRRC8A_5end | ||
|id=chr9:131675002..131675013,+ | |id=chr9:131675002..131675013,+ | ||
|ontology_enrichment_celltype=CL:0002076!6.80e-16!43;CL:0000066!2.36e-14!254;CL:0000223!3.59e-11!59;CL:0002321!3.61e-11!248;CL:0000220!1.01e-10!246;CL:0002368!2.40e-08!13;CL:0000076!7.59e-08!62;CL:0002159!2.16e-07!13;CL:0002251!7.38e-07!21 | |ontology_enrichment_celltype=CL:0002076!6.80e-16!43;CL:0000066!2.36e-14!254;CL:0000223!3.59e-11!59;CL:0002321!3.61e-11!248;CL:0000220!1.01e-10!246;CL:0002368!2.40e-08!13;CL:0000076!7.59e-08!62;CL:0002159!2.16e-07!13;CL:0002251!7.38e-07!21 | ||
|ontology_enrichment_celltype_v019=CL:0002591;3.28e-23;1!CL:0002368;6.00e-16;13!CL:0000197;9.04e-16;6!CL:0000098;9.04e-16;6!CL:0002167;9.04e-16;6!CL:0002202;7.96e-11;9!CL:0002632;7.96e-11;9!CL:0002328;8.96e-09;3!CL:0002231;1.21e-08;3!CL:0000307;1.21e-08;3!CL:0002076;6.83e-08;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0002591,4.10e-23,1;CL:0002368,5.71e-16,13;CL:0000197,7.23e-16,6;CL:0000098,7.23e-16,6;CL:0002167,7.23e-16,6;CL:0002202,7.96e-11,9;CL:0002632,7.96e-11,9;CL:0002076,8.85e-09,42;CL:0002328,8.96e-09,3;CL:0000068,1.21e-08,3;CL:0000069,1.21e-08,3;CL:0000307,1.21e-08,3;CL:0000377,1.21e-08,3;CL:0002231,1.51e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000377;1.21e-08;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!7.37e-08!12;UBERON:0003729!1.85e-07!5;UBERON:0003102!2.86e-07!95 | |ontology_enrichment_uberon=UBERON:0000344!7.37e-08!12;UBERON:0003729!1.85e-07!5;UBERON:0003102!2.86e-07!95 | ||
|ontology_enrichment_uberon_v019=UBERON:0000078;2.59e-12;2!UBERON:0002012;2.59e-12;2!UBERON:0008886;2.59e-12;2!UBERON:0004815;8.96e-09;3!UBERON:0002031;8.96e-09;3!UBERON:0007196;7.41e-07;15!UBERON:0001558;7.41e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000078,2.90e-12,2;UBERON:0007497,2.90e-12,2;UBERON:0003643,2.90e-12,2;UBERON:0003504,2.90e-12,2;UBERON:0003469,2.90e-12,2;UBERON:0003496,2.90e-12,2;UBERON:0002012,2.90e-12,2;UBERON:0008886,2.90e-12,2;UBERON:0007303,2.90e-12,2;UBERON:0002061,2.90e-12,2;UBERON:0005432,2.90e-12,2;UBERON:0004363,2.90e-12,2;UBERON:0000485,8.37e-11,9;UBERON:0004815,8.96e-09,3;UBERON:0002031,8.96e-09,3;UBERON:0004145,1.30e-08,3;UBERON:0000065,6.51e-07,54;UBERON:0007196,7.41e-07,15;UBERON:0001558,7.41e-07,15 | |||
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| ||
|short_description=p29@LRRC8A | |short_description=p29@LRRC8A | ||
}} | }} |
Latest revision as of 21:12, 15 September 2015
Short description: | p29@LRRC8A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_29_at_LRRC8A_5end |
Coexpression cluster: | NA |
Association with transcript: | -9bp_to_ENST00000492784_5end |
EntrezGene: | LRRC8A |
HGNC: | 19027 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the pulmonary artery | 4.10e-23 | 1 |
respiratory epithelial cell | 5.71e-16 | 13 |
receptor cell | 7.23e-16 | 6 |
sensory epithelial cell | 7.23e-16 | 6 |
olfactory epithelial cell | 7.23e-16 | 6 |
epithelial cell of tracheobronchial tree | 7.96e-11 | 9 |
epithelial cell of lower respiratory tract | 7.96e-11 | 9 |
endo-epithelial cell | 8.85e-09 | 42 |
bronchial epithelial cell | 8.96e-09 | 3 |
duct epithelial cell | 1.21e-08 | 3 |
branched duct epithelial cell | 1.21e-08 | 3 |
tracheal epithelial cell | 1.21e-08 | 3 |
tracheoblast | 1.21e-08 | 3 |
epithelial cell of prostate | 1.51e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
mixed ectoderm/mesoderm/endoderm-derived structure | 2.90e-12 | 2 |
developing epithelial placode | 2.90e-12 | 2 |
respiratory system arterial blood vessel | 2.90e-12 | 2 |
respiratory system blood vessel | 2.90e-12 | 2 |
respiratory system artery | 2.90e-12 | 2 |
head blood vessel | 2.90e-12 | 2 |
pulmonary artery | 2.90e-12 | 2 |
pulmonary vascular system | 2.90e-12 | 2 |
pharyngeal vasculature | 2.90e-12 | 2 |
truncus arteriosus | 2.90e-12 | 2 |
aortic sac | 2.90e-12 | 2 |
pharyngeal arch artery | 2.90e-12 | 2 |
simple columnar epithelium | 8.37e-11 | 9 |
lower respiratory tract epithelium | 8.96e-09 | 3 |
epithelium of bronchus | 8.96e-09 | 3 |
outflow tract | 1.30e-08 | 3 |
respiratory tract | 6.51e-07 | 54 |
tracheobronchial tree | 7.41e-07 | 15 |
lower respiratory tract | 7.41e-07 | 15 |