FFCP PHASE1:Hg19::chr9:118356219..118356259,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr9:118356219..118356259,+ | |||
|coexpression_cluster_id=C91 | |||
|description=CAGE_peak_at_chr9:118356219..118356259,+ | |description=CAGE_peak_at_chr9:118356219..118356259,+ | ||
|id=chr9:118356219..118356259,+ | |id=chr9:118356219..118356259,+ | ||
|ontology_enrichment_celltype=CL:0000569!7.69e-14!4;CL:0000011!7.69e-14!4;CL:0000055!8.41e-14!180;CL:0000680!6.86e-12!57;CL:0000056!6.86e-12!57;CL:0000355!6.86e-12!57;CL:0000359!1.73e-11!32;CL:0000187!4.08e-11!54;CL:0002334!4.64e-10!12;CL:0000183!7.00e-10!59;CL:0000192!9.67e-10!42;CL:0000514!9.67e-10!42;CL:0000393!1.17e-09!60;CL:0000211!1.17e-09!60;CL:0000723!6.77e-09!436;CL:0002594!8.49e-09!4;CL:0000034!1.55e-08!444;CL:0000048!1.84e-08!430;CL:0002583!7.92e-08!2;CL:0002588!8.49e-08!2;CL:0002494!4.14e-07!16;CL:0000057!5.52e-07!75 | |ontology_enrichment_celltype=CL:0000569!7.69e-14!4;CL:0000011!7.69e-14!4;CL:0000055!8.41e-14!180;CL:0000680!6.86e-12!57;CL:0000056!6.86e-12!57;CL:0000355!6.86e-12!57;CL:0000359!1.73e-11!32;CL:0000187!4.08e-11!54;CL:0002334!4.64e-10!12;CL:0000183!7.00e-10!59;CL:0000192!9.67e-10!42;CL:0000514!9.67e-10!42;CL:0000393!1.17e-09!60;CL:0000211!1.17e-09!60;CL:0000723!6.77e-09!436;CL:0002594!8.49e-09!4;CL:0000034!1.55e-08!444;CL:0000048!1.84e-08!430;CL:0002583!7.92e-08!2;CL:0002588!8.49e-08!2;CL:0002494!4.14e-07!16;CL:0000057!5.52e-07!75 | ||
|ontology_enrichment_celltype_v019=CL:0002589;1.14e-13;2!CL:0000346;1.47e-09;3!CL:1000428;1.47e-09;3!CL:1000306;1.31e-07;4!CL:0002547;1.31e-07;4!CL:0000306;1.75e-07;4!CL:0002222;1.75e-07;4!CL:0002224;1.75e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002589,1.37e-13,2;CL:0000346,1.30e-09,3;CL:1000428,1.30e-09,3;CL:1000306,1.31e-07,4;CL:0002547,1.31e-07,4;CL:0000306,1.80e-07,4;CL:0002222,1.80e-07,4;CL:0002224,1.80e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!4.10e-11!14 | |ontology_enrichment_disease=DOID:2394!4.10e-11!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001134!7.28e-11!61;UBERON:0002036!7.28e-11!61;UBERON:0003082!7.28e-11!61;UBERON:0004872!1.60e-10!84;UBERON:0004290!2.09e-10!70;UBERON:0002385!2.11e-10!63;UBERON:0001015!2.11e-10!63;UBERON:0000383!2.11e-10!63;UBERON:0004535!6.72e-09!110;UBERON:0001310!8.49e-09!4;UBERON:0001009!1.56e-08!113;UBERON:0002119!2.27e-08!4;UBERON:0004531!2.27e-08!4;UBERON:0000486!2.60e-08!82;UBERON:0001637!2.93e-08!42;UBERON:0003509!2.93e-08!42;UBERON:0004572!2.93e-08!42;UBERON:0000914!3.65e-08!83;UBERON:0002329!3.65e-08!83;UBERON:0003077!3.65e-08!83;UBERON:0003059!3.65e-08!83;UBERON:0007282!3.65e-08!83;UBERON:0009618!3.65e-08!83;UBERON:0007285!3.65e-08!83;UBERON:0001981!2.79e-07!60;UBERON:0007500!2.79e-07!60;UBERON:0004537!2.79e-07!60;UBERON:0006965!2.79e-07!60;UBERON:0003914!4.39e-07!118 | |ontology_enrichment_uberon=UBERON:0001134!7.28e-11!61;UBERON:0002036!7.28e-11!61;UBERON:0003082!7.28e-11!61;UBERON:0004872!1.60e-10!84;UBERON:0004290!2.09e-10!70;UBERON:0002385!2.11e-10!63;UBERON:0001015!2.11e-10!63;UBERON:0000383!2.11e-10!63;UBERON:0004535!6.72e-09!110;UBERON:0001310!8.49e-09!4;UBERON:0001009!1.56e-08!113;UBERON:0002119!2.27e-08!4;UBERON:0004531!2.27e-08!4;UBERON:0000486!2.60e-08!82;UBERON:0001637!2.93e-08!42;UBERON:0003509!2.93e-08!42;UBERON:0004572!2.93e-08!42;UBERON:0000914!3.65e-08!83;UBERON:0002329!3.65e-08!83;UBERON:0003077!3.65e-08!83;UBERON:0003059!3.65e-08!83;UBERON:0007282!3.65e-08!83;UBERON:0009618!3.65e-08!83;UBERON:0007285!3.65e-08!83;UBERON:0001981!2.79e-07!60;UBERON:0007500!2.79e-07!60;UBERON:0004537!2.79e-07!60;UBERON:0006965!2.79e-07!60;UBERON:0003914!4.39e-07!118 | ||
|ontology_enrichment_uberon_v019=UBERON:0001529;1.14e-13;2!UBERON:0007204;1.14e-13;2!UBERON:0000412;1.47e-09;3!UBERON:0001992;1.47e-09;3!UBERON:0004797;1.31e-07;4!UBERON:0000415;1.31e-07;4!UBERON:0007240;1.31e-07;4!UBERON:0005742;1.31e-07;4!UBERON:0005734;1.31e-07;4!UBERON:0004664;1.31e-07;4!UBERON:0004663;1.31e-07;4!UBERON:0001003;1.49e-07;15!UBERON:0007376;1.49e-07;15!UBERON:0010077;1.75e-07;4!UBERON:0005389;1.75e-07;4!UBERON:0000484;1.75e-07;4!UBERON:0000965;1.75e-07;4!UBERON:0001803;1.75e-07;4!UBERON:0010371;2.64e-07;31!UBERON:0004573;3.81e-07;33!UBERON:0004571;3.81e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001529,1.37e-13,2;UBERON:0007204,1.37e-13,2;UBERON:0000412,1.30e-09,3;UBERON:0001992,1.30e-09,3;UBERON:0000415,1.31e-07,4;UBERON:0007240,1.31e-07,4;UBERON:0005742,1.31e-07,4;UBERON:0005734,1.31e-07,4;UBERON:0004664,1.31e-07,4;UBERON:0004663,1.31e-07,4;UBERON:0001003,1.54e-07,15;UBERON:0007376,1.54e-07,15;UBERON:0007383,1.54e-07,15;UBERON:0010077,1.80e-07,4;UBERON:0005389,1.80e-07,4;UBERON:0000484,1.80e-07,4;UBERON:0002546,1.80e-07,4;UBERON:0000965,1.80e-07,4;UBERON:0001803,1.80e-07,4;UBERON:0003073,1.80e-07,4;UBERON:0005426,1.80e-07,4;UBERON:0004573,1.81e-07,33;UBERON:0004571,1.81e-07,33 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0.602694528023977,0.730310090387373,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50401373190767,0,0.795285947051099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,8.60659675285922,0,0,0,0,0.49333509683432,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0.0920498986422993,0,0.355009592516614,0,0.67824236924195,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,1.1240175325762,0,0,0,0,1.44331342025273,0,0.469634776943287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.920771839728375,0,0.256278298511402,0.511707249066704,0,0,0.154209693802656,0.355123450626254,0.328508624055237,0,0,0,0,0,0.114814448164607,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275673144969061,0,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,2.83331112147576,0,0,0,0,0,1.14499909393593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0.551365343546124,0.66343897524122,0,0,0,0.608731130888112,0.30982349809975,0,0.286822704408103,0.196498082026242,0.7133421029625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0.151230923763239,0.621748802331122,0.147855149989634,0.318593534327405,0,0.155262956876259,0.414706207840855,0.265841714557995,0,0.150257608997218,0,0,1.81848659202559,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0.602694528023977,0.730310090387373,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50401373190767,0,0.795285947051099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,8.60659675285922,0,0,0,0,0.49333509683432,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0.0920498986422993,0,0.355009592516614,0,0.67824236924195,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,1.1240175325762,0,0,0,0,1.44331342025273,0,0.469634776943287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.920771839728375,0,0.256278298511402,0.511707249066704,0,0,0.154209693802656,0.355123450626254,0.328508624055237,0,0,0,0,0,0.114814448164607,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275673144969061,0,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,2.83331112147576,0,0,0,0,0,1.14499909393593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0.551365343546124,0.66343897524122,0,0,0,0.608731130888112,0.30982349809975,0,0.286822704408103,0.196498082026242,0.7133421029625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0.151230923763239,0.621748802331122,0.147855149989634,0.318593534327405,0,0.155262956876259,0.414706207840855,0.265841714557995,0,0.150257608997218,0,0,1.81848659202559,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr9:118356219..118356259,+ | |short_description=p@chr9:118356219..118356259,+ | ||
}} | }} |
Latest revision as of 22:09, 31 July 2015
Short description: | p@chr9:118356219..118356259, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:118356219..118356259, + |
Coexpression cluster: | C91_Fibroblast_Smooth_mesenchymal_Mesothelial_Small_Preadipocyte_Hair |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the brachiocephalic vasculature | 1.37e-13 | 2 |
hair follicle dermal papilla cell | 1.30e-09 | 3 |
stem cell of epidermis | 1.30e-09 | 3 |
fibroblast of tunica adventitia of artery | 1.31e-07 | 4 |
fibroblast of the aortic adventitia | 1.31e-07 | 4 |
crystallin accumulating cell | 1.80e-07 | 4 |
vertebrate lens cell | 1.80e-07 | 4 |
lens epithelial cell | 1.80e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
brachiocephalic artery | 1.37e-13 | 2 |
brachiocephalic vasculature | 1.37e-13 | 2 |
dermal papilla | 1.30e-09 | 3 |
papillary layer of dermis | 1.30e-09 | 3 |
artery wall | 1.31e-07 | 4 |
tunica adventitia of artery | 1.31e-07 | 4 |
adventitia | 1.31e-07 | 4 |
tunica adventitia of blood vessel | 1.31e-07 | 4 |
aorta tunica adventitia | 1.31e-07 | 4 |
aorta wall | 1.31e-07 | 4 |
skin epidermis | 1.54e-07 | 15 |
outer epithelium | 1.54e-07 | 15 |
enveloping layer of ectoderm | 1.54e-07 | 15 |
cuboidal epithelium | 1.80e-07 | 4 |
transparent eye structure | 1.80e-07 | 4 |
simple cuboidal epithelium | 1.80e-07 | 4 |
cranial placode | 1.80e-07 | 4 |
lens of camera-type eye | 1.80e-07 | 4 |
epithelium of lens | 1.80e-07 | 4 |
lens placode | 1.80e-07 | 4 |
lens vesicle | 1.80e-07 | 4 |
systemic artery | 1.81e-07 | 33 |
systemic arterial system | 1.81e-07 | 33 |