FFCP PHASE1:Hg19::chr13:20532639..20532650,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:20532639..20532650,- | |||
|description=CAGE_peak_at_chr13:20532639..20532650,- | |description=CAGE_peak_at_chr13:20532639..20532650,- | ||
|id=chr13:20532639..20532650,- | |id=chr13:20532639..20532650,- | ||
|ontology_enrichment_celltype=CL:0000738!7.95e-10!140;CL:0002031!9.08e-10!124;CL:0002087!2.17e-08!119;CL:0002057!2.52e-07!42 | |ontology_enrichment_celltype=CL:0000738!7.95e-10!140;CL:0002031!9.08e-10!124;CL:0002087!2.17e-08!119;CL:0002057!2.52e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0000511;4.66e-21;1!CL:0002625;4.66e-21;1!CL:0000216;4.66e-21;1!CL:0000815;3.18e-11;2!CL:0000650;3.18e-11;2!CL:1000500;3.18e-11;2!CL:1000618;3.18e-11;2!CL:1001318;3.18e-11;2!CL:0000792;3.18e-11;2!CL:0002173;3.18e-11;2!CL:0002677;3.18e-11;2!CL:0000898;6.56e-08;3!CL:0000784;6.56e-08;3!CL:0002567;6.56e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000511,4.22e-21,1;CL:0002625,4.22e-21,1;CL:0000216,4.22e-21,1;CL:0000815,2.73e-11,2;CL:0000792,2.73e-11,2;CL:0002677,2.73e-11,2;CL:0000650,4.52e-11,2;CL:1000500,4.52e-11,2;CL:1000618,4.52e-11,2;CL:1001318,4.52e-11,2;CL:0002173,4.52e-11,2;CL:0000784,5.54e-08,3;CL:0000898,5.93e-08,3;CL:0002567,7.76e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0001136;4.66e-21;1!UBERON:0001343;4.66e-21;1!UBERON:0004910;4.66e-21;1!UBERON:0004813;4.66e-21;1!UBERON:0003567;3.18e-11;2!UBERON:0003838;3.18e-11;2!UBERON:0003586;3.18e-11;2!UBERON:0004909;3.18e-11;2!UBERON:0005169;3.18e-11;2!UBERON:0002321;3.18e-11;2!UBERON:0005215;3.18e-11;2!UBERON:0002303;3.18e-11;2!UBERON:0002319;3.18e-11;2!UBERON:0000473;7.29e-11;8!UBERON:0003135;3.76e-08;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,4.22e-21,1;UBERON:0001343,4.22e-21,1;UBERON:0004910,4.22e-21,1;UBERON:0005154,4.22e-21,1;UBERON:0005295,4.22e-21,1;UBERON:0004813,4.22e-21,1;UBERON:0005297,4.22e-21,1;UBERON:0005294,4.22e-21,1;UBERON:0010141,4.22e-21,1;UBERON:0005891,4.22e-21,1;UBERON:0004909,3.02e-11,2;UBERON:0003567,4.52e-11,2;UBERON:0003838,4.52e-11,2;UBERON:0003586,4.52e-11,2;UBERON:0005169,4.52e-11,2;UBERON:0002321,4.52e-11,2;UBERON:0005215,4.52e-11,2;UBERON:0002303,4.52e-11,2;UBERON:0002319,4.52e-11,2;UBERON:0000473,7.67e-11,8;UBERON:0003135,3.90e-08,11;UBERON:0004876,4.18e-08,11 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0.123766352960047,0,0,0,0,0,0,0.816002764977012,0.313454721478088,0,0,0.125542639594803,0.229240217243854,0,0,0,0,0,0,0,0,0.0774672005803016,0,0.880801318004542,0,0,0.434021741431704,0,0,0,0.290796477559129,0,0.242584061187816,0.232429036905685,0,0,0,0.256160706529101,0.236482229888585,0.344745680736619,0,0,0.752969358170419,0.272906150057846,0.224723484445085,0,0,0.639337125799041,0.329851300186716,0.199463657621632,0,0,0,0,0.502497330513487,0,0,0,0.368277635987565,0,0,0.212604299965044,0.209658645508376,0.22465726229299,0.150176892841506,0.32145117339416,0.285012743741249,0.39783335439818,0.182664153764634,1.75996244461323,0,0,0.426730222566507,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0,0.382273228125229,1.32171328579026,0,0,0,0.393010762749165,0,0,1.62961133316795,0,0,0,0,0,0,0,0,0,0.552700035571697,0.289803085735052,0.296573126324121,0,0,0,0.383220493601921,0.34362744548263,0,0.318565414324097,0,0,0,0,2.49861453104692,0.236777252044017,0.821127996921047,0.403213486449465,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.72038491523742,0,0.370784442784429,0.324547393654683,0,0,0.715471872916026,1.71598473234038,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0.311211035399766,0,0,0,0,0.234321431833797,0,0,0,0,0.323745888736263,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0.300476117813194,0,0.179389635688862,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.348581828608555,0.414644220061482,0.252320850875628,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0.100528972411631,0,0,0,0,0.34779121492523,0,0,0,0.190254152234598,2.37061319387782,0.858486162094873,0,0,0,0,0,0,0,0.290633938513962,0,0,0.088048434013226,0.414656231081544,0.288239906833923,0.88369703398466,0,0.381988425558278,1.17217447210047,0,0.205654985406647,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0.256686072559497,0,0,0.773288812777695,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0.0868836144680828,0,0,0,0.431428401637234,0.213455115606889,0.303127571446259,0,0.30239029332968,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00337954770971,0,0,0,0.219259876645935,0,0,0,0.325378394664303,0.103041011647722,0.183138929636687,0,0,0,1.6068392984416,0,0.308097234229289,0,0,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0.464845549297286,0,0,0.308033580176089,0.532306030317022,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0.670302275535787,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0,0,0.211125408127993,0,0,0.251932747854276,0,0.369254416383208,0.311039587661807,0,0,0,0,0,0,0,0,0,0.260427761085233,0.0874599999961957,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0,0,0,0,0.0769502585037971,0,0,0,0.217294743844016,0.31900115973192,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0.216388639742091,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0.195551382734803,0,0,0,0.144090417154106,0,0,0.14405479798815,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0.0824158583811665,0,0.0984274815147488,0.254019996197353,0,0,0.482259445395058,0.962776056180637,0.415440338029185,0.2249738915515,0,0,0,0,0.0524545881349981,0,0.179287339332845,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0.39669780522807,0,0,0.106787412567695,0,0.414239055347196,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.18628920882415,0,0,0.151649117541648,0,0,0,0.28984205722165,0,0.233713309847224,0,0,0,0,0.228840068396924,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0.244736704506468,0,0,0,0,0,0,0,0.345430341731199,0,0.138258436151731,0,0.132864840313363,0.163565394255844,0,0.245772908753719,0,0,0,0.344429959321631,0,0,0.139879507719444,0,0.255788742607303,0,0.786329709279482,0.109209638192014,0,0.637724760305049,0.247871528518004,0,0,0.157723490002507,0,0,0,0.0642292250964595,0,0.478901577171454,0,0,0.0691572524642179,0,0,0,0,0,0.231051332300676,0,0,0,0.0752103283492573,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0.351742488719241,0,0,0,0,0,0,0,0,0.271878931907327,0,0,0,0,0,0,0,0,0.47775168788705,0.142953088353313,0,0,0,0,0,0.17071847709395,0,0,0.236664001461131,0.0852134047591577,0,0.22910686854405,0,0,0,0,0.121917924982269,0,0,0,0,0,0.198950775161368,0.356760272332706,0.11294608203896,0.329821550236287,0.150962843566674,0.154348316215889,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0.352894871715692,0.0802413666891683,0,0,0.286679166302903,0,0.0679914901909147,0,0,0,0,0,0,0.109265571963696,0.633492505057185,0,0,0.18378979906969,0,1.21245917149183,0.267964130156178,0,0,0,0,0.0645889098360061,0.124149428591716,0,0,0,0,0.342233301085281,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0.123766352960047,0,0,0,0,0,0,0.816002764977012,0.313454721478088,0,0,0.125542639594803,0.229240217243854,0,0,0,0,0,0,0,0,0.0774672005803016,0,0.880801318004542,0,0,0.434021741431704,0,0,0,0.290796477559129,0,0.242584061187816,0.232429036905685,0,0,0,0.256160706529101,0.236482229888585,0.344745680736619,0,0,0.752969358170419,0.272906150057846,0.224723484445085,0,0,0.639337125799041,0.329851300186716,0.199463657621632,0,0,0,0,0.502497330513487,0,0,0,0.368277635987565,0,0,0.212604299965044,0.209658645508376,0.22465726229299,0.150176892841506,0.32145117339416,0.285012743741249,0.39783335439818,0.182664153764634,1.75996244461323,0,0,0.426730222566507,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0,0.382273228125229,1.32171328579026,0,0,0,0.393010762749165,0,0,1.62961133316795,0,0,0,0,0,0,0,0,0,0.552700035571697,0.289803085735052,0.296573126324121,0,0,0,0.383220493601921,0.34362744548263,0,0.318565414324097,0,0,0,0,2.49861453104692,0.236777252044017,0.821127996921047,0.403213486449465,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.72038491523742,0,0.370784442784429,0.324547393654683,0,0,0.715471872916026,1.71598473234038,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0.311211035399766,0,0,0,0,0.234321431833797,0,0,0,0,0.323745888736263,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0.300476117813194,0,0.179389635688862,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.348581828608555,0.414644220061482,0.252320850875628,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0.100528972411631,0,0,0,0,0.34779121492523,0,0,0,0.190254152234598,2.37061319387782,0.858486162094873,0,0,0,0,0,0,0,0.290633938513962,0,0,0.088048434013226,0.414656231081544,0.288239906833923,0.88369703398466,0,0.381988425558278,1.17217447210047,0,0.205654985406647,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0.256686072559497,0,0,0.773288812777695,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0.0868836144680828,0,0,0,0.431428401637234,0.213455115606889,0.303127571446259,0,0.30239029332968,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00337954770971,0,0,0,0.219259876645935,0,0,0,0.325378394664303,0.103041011647722,0.183138929636687,0,0,0,1.6068392984416,0,0.308097234229289,0,0,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0.464845549297286,0,0,0.308033580176089,0.532306030317022,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0.670302275535787,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0,0,0.211125408127993,0,0,0.251932747854276,0,0.369254416383208,0.311039587661807,0,0,0,0,0,0,0,0,0,0.260427761085233,0.0874599999961957,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0,0,0,0,0.0769502585037971,0,0,0,0.217294743844016,0.31900115973192,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0.216388639742091,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0.195551382734803,0,0,0,0.144090417154106,0,0,0.14405479798815,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0.0824158583811665,0,0.0984274815147488,0.254019996197353,0,0,0.482259445395058,0.962776056180637,0.415440338029185,0.2249738915515,0,0,0,0,0.0524545881349981,0,0.179287339332845,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0.39669780522807,0,0,0.106787412567695,0,0.414239055347196,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.18628920882415,0,0,0.151649117541648,0,0,0,0.28984205722165,0,0.233713309847224,0,0,0,0,0.228840068396924,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0.244736704506468,0,0,0,0,0,0,0,0.345430341731199,0,0.138258436151731,0,0.132864840313363,0.163565394255844,0,0.245772908753719,0,0,0,0.344429959321631,0,0,0.139879507719444,0,0.255788742607303,0,0.786329709279482,0.109209638192014,0,0.637724760305049,0.247871528518004,0,0,0.157723490002507,0,0,0,0.0642292250964595,0,0.478901577171454,0,0,0.0691572524642179,0,0,0,0,0,0.231051332300676,0,0,0,0.0752103283492573,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0.351742488719241,0,0,0,0,0,0,0,0,0.271878931907327,0,0,0,0,0,0,0,0,0.47775168788705,0.142953088353313,0,0,0,0,0,0.17071847709395,0,0,0.236664001461131,0.0852134047591577,0,0.22910686854405,0,0,0,0,0.121917924982269,0,0,0,0,0,0.198950775161368,0.356760272332706,0.11294608203896,0.329821550236287,0.150962843566674,0.154348316215889,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0.352894871715692,0.0802413666891683,0,0,0.286679166302903,0,0.0679914901909147,0,0,0,0,0,0,0.109265571963696,0.633492505057185,0,0,0.18378979906969,0,1.21245917149183,0.267964130156178,0,0,0,0,0.0645889098360061,0.124149428591716,0,0,0,0,0.342233301085281,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr13:20532639..20532650,- | |short_description=p@chr13:20532639..20532650,- | ||
}} | }} |
Latest revision as of 14:57, 24 July 2015
Short description: | p@chr13:20532639..20532650, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:20532639..20532650, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 4.22e-21 | 1 |
seminiferous tubule epithelial cell | 4.22e-21 | 1 |
Sertoli cell | 4.22e-21 | 1 |
regulatory T cell | 2.73e-11 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.73e-11 | 2 |
naive regulatory T cell | 2.73e-11 | 2 |
mesangial cell | 4.52e-11 | 2 |
kidney interstitial cell | 4.52e-11 | 2 |
juxtaglomerular complex cell | 4.52e-11 | 2 |
renal interstitial pericyte | 4.52e-11 | 2 |
extraglomerular mesangial cell | 4.52e-11 | 2 |
plasmacytoid dendritic cell | 5.54e-08 | 3 |
naive T cell | 5.93e-08 | 3 |
light melanocyte | 7.76e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 4.22e-21 | 1 |
seminiferous tubule of testis | 4.22e-21 | 1 |
epithelium of male gonad | 4.22e-21 | 1 |
epithelial cord | 4.22e-21 | 1 |
sex cord | 4.22e-21 | 1 |
seminiferous tubule epithelium | 4.22e-21 | 1 |
testis sex cord | 4.22e-21 | 1 |
genital ridge | 4.22e-21 | 1 |
primitive sex cord of indifferent gonad | 4.22e-21 | 1 |
coelomic epithelium | 4.22e-21 | 1 |
epithelium of gonad | 3.02e-11 | 2 |
abdomen connective tissue | 4.52e-11 | 2 |
abdominal segment connective tissue | 4.52e-11 | 2 |
trunk connective tissue | 4.52e-11 | 2 |
interstitial tissue | 4.52e-11 | 2 |
extraglomerular mesangium | 4.52e-11 | 2 |
kidney interstitium | 4.52e-11 | 2 |
juxtaglomerular apparatus | 4.52e-11 | 2 |
mesangium | 4.52e-11 | 2 |
testis | 7.67e-11 | 8 |
male reproductive organ | 3.90e-08 | 11 |
urogenital ridge | 4.18e-08 | 11 |