FFCP PHASE1:Hg19::chr8:57233103..57233123,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=195814 | |EntrezGene=195814 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30311 | |HGNC=30311 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N3Y7,B3KT84 | |UniProt=Q8N3Y7,B3KT84 | ||
|association_with_transcript=117bp_to_ENST00000303749,NM_138969,uc003xsy.1,uc010lyk.1,uc010lyl.1_5end | |association_with_transcript=117bp_to_ENST00000303749,NM_138969,uc003xsy.1,uc010lyk.1,uc010lyl.1_5end | ||
|cluster_id=chr8:57233103..57233123,- | |||
|coexpression_cluster_id=C120 | |||
|description=CAGE_peak_2_at_SDR16C5_5end | |description=CAGE_peak_2_at_SDR16C5_5end | ||
|id=chr8:57233103..57233123,- | |id=chr8:57233103..57233123,- | ||
|ontology_enrichment_celltype=CL:0000066!8.38e-13!254;CL:0002368!3.23e-10!13;CL:0002076!6.32e-09!43;CL:0000082!3.15e-08!19;CL:0000223!6.51e-07!59 | |ontology_enrichment_celltype=CL:0000066!8.38e-13!254;CL:0002368!3.23e-10!13;CL:0002076!6.32e-09!43;CL:0000082!3.15e-08!19;CL:0000223!6.51e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000082;4.40e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000082,4.13e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.95e-17;29!UBERON:0001041;1.06e-12;30 | |||
|ontology_enrichment_disease=DOID:305!8.94e-17!106;DOID:0050687!2.81e-10!143;DOID:3905!1.12e-07!9;DOID:1749!3.67e-07!14;DOID:4556!9.54e-07!3 | |ontology_enrichment_disease=DOID:305!8.94e-17!106;DOID:0050687!2.81e-10!143;DOID:3905!1.12e-07!9;DOID:1749!3.67e-07!14;DOID:4556!9.54e-07!3 | ||
|ontology_enrichment_disease_v019=DOID:3905;8.42e-15;9!DOID:4556;9.82e-12;3!DOID:5409;2.77e-09;4!DOID:1324;6.06e-09;15!DOID:0050615;2.16e-08;16!DOID:3908;2.21e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3905,7.32e-15,9;DOID:4556,7.92e-12,3;DOID:5409,2.77e-09,4;DOID:1324,5.58e-09,15;DOID:0050615,2.00e-08,16;DOID:3908,1.95e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000065!2.74e-25!53;UBERON:0001004!3.93e-23!72;UBERON:0001041!1.19e-18!98;UBERON:0008947!1.81e-18!38;UBERON:0003258!1.81e-18!38;UBERON:0004119!6.00e-17!169;UBERON:0000925!6.00e-17!169;UBERON:0006595!6.00e-17!169;UBERON:0000072!2.16e-16!46;UBERON:0001007!5.74e-15!155;UBERON:0001555!5.74e-15!155;UBERON:0007026!5.74e-15!155;UBERON:0000077!1.35e-14!130;UBERON:0004921!9.76e-14!129;UBERON:0004185!9.76e-14!129;UBERON:0002048!2.35e-12!22;UBERON:0000117!2.35e-12!22;UBERON:0000171!2.35e-12!22;UBERON:0000170!2.35e-12!22;UBERON:0005597!2.35e-12!22;UBERON:0000118!2.35e-12!22;UBERON:0005178!1.05e-10!34;UBERON:0002224!1.05e-10!34;UBERON:0005153!1.18e-10!37;UBERON:0001557!1.24e-10!19;UBERON:0005181!2.84e-10!35;UBERON:0000064!2.40e-09!219;UBERON:0001737!7.16e-09!9;UBERON:0005157!1.97e-08!51;UBERON:0004807!2.82e-08!28;UBERON:0004802!3.15e-08!19;UBERON:0000115!3.15e-08!19;UBERON:0005911!4.66e-08!82;UBERON:0002394!1.85e-07!4;UBERON:0003928!1.85e-07!4 | |ontology_enrichment_uberon=UBERON:0000065!2.74e-25!53;UBERON:0001004!3.93e-23!72;UBERON:0001041!1.19e-18!98;UBERON:0008947!1.81e-18!38;UBERON:0003258!1.81e-18!38;UBERON:0004119!6.00e-17!169;UBERON:0000925!6.00e-17!169;UBERON:0006595!6.00e-17!169;UBERON:0000072!2.16e-16!46;UBERON:0001007!5.74e-15!155;UBERON:0001555!5.74e-15!155;UBERON:0007026!5.74e-15!155;UBERON:0000077!1.35e-14!130;UBERON:0004921!9.76e-14!129;UBERON:0004185!9.76e-14!129;UBERON:0002048!2.35e-12!22;UBERON:0000117!2.35e-12!22;UBERON:0000171!2.35e-12!22;UBERON:0000170!2.35e-12!22;UBERON:0005597!2.35e-12!22;UBERON:0000118!2.35e-12!22;UBERON:0005178!1.05e-10!34;UBERON:0002224!1.05e-10!34;UBERON:0005153!1.18e-10!37;UBERON:0001557!1.24e-10!19;UBERON:0005181!2.84e-10!35;UBERON:0000064!2.40e-09!219;UBERON:0001737!7.16e-09!9;UBERON:0005157!1.97e-08!51;UBERON:0004807!2.82e-08!28;UBERON:0004802!3.15e-08!19;UBERON:0000115!3.15e-08!19;UBERON:0005911!4.66e-08!82;UBERON:0002394!1.85e-07!4;UBERON:0003928!1.85e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002048;1.32e-17;22!UBERON:0000117;1.32e-17;22!UBERON:0000171;1.32e-17;22!UBERON:0000170;1.32e-17;22!UBERON:0000065;2.99e-14;44!UBERON:0001264;7.33e-13;10!UBERON:0005178;1.15e-09;34!UBERON:0002224;1.15e-09;34!UBERON:0002171;1.32e-09;1!UBERON:0006518;1.32e-09;1!UBERON:0008949;1.32e-09;1!UBERON:0000101;1.32e-09;1!UBERON:0002167;1.32e-09;1!UBERON:0005181;4.84e-09;35!UBERON:0001004;2.00e-07;65!UBERON:0002075;3.25e-07;18!UBERON:0004802;4.40e-07;19!UBERON:0000115;4.40e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002048,1.23e-17,22;UBERON:0000117,1.23e-17,22;UBERON:0000171,1.23e-17,22;UBERON:0000170,1.23e-17,22;UBERON:0005597,1.23e-17,22;UBERON:0000118,1.23e-17,22;UBERON:0000065,2.04e-13,54;UBERON:0005153,4.34e-13,37;UBERON:0001264,7.58e-13,10;UBERON:0008947,1.01e-12,38;UBERON:0003258,1.01e-12,38;UBERON:0005178,3.91e-11,34;UBERON:0002224,3.91e-11,34;UBERON:0005181,8.57e-11,35;UBERON:0005157,4.48e-10,47;UBERON:0002171,1.43e-09,1;UBERON:0006518,1.43e-09,1;UBERON:0008949,1.43e-09,1;UBERON:0000101,1.43e-09,1;UBERON:0002167,1.43e-09,1;UBERON:0001004,2.33e-09,74;UBERON:0000915,4.73e-09,52;UBERON:0005177,7.28e-08,101;UBERON:0002075,3.31e-07,18;UBERON:0004802,4.13e-07,19;UBERON:0000115,4.13e-07,19 | |||
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| ||
|short_description=p2@SDR16C5 | |short_description=p2@SDR16C5 | ||
}} | }} |
Latest revision as of 13:55, 18 September 2015
Short description: | p2@SDR16C5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SDR16C5_5end |
Coexpression cluster: | C120_immature_salivary_tongue_skin_cervical_CD14_CD34 |
Association with transcript: | 117bp_to_ENST00000303749, NM_138969, uc003xsy.1, uc010lyk.1, uc010lyl.1_5end |
EntrezGene: | SDR16C5 |
HGNC: | 30311 |
UniProt: | Q8N3Y7B3KT84 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of lung | 4.13e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
lung | 1.23e-17 | 22 |
respiratory tube | 1.23e-17 | 22 |
respiration organ | 1.23e-17 | 22 |
pair of lungs | 1.23e-17 | 22 |
lung primordium | 1.23e-17 | 22 |
lung bud | 1.23e-17 | 22 |
respiratory tract | 2.04e-13 | 54 |
epithelial bud | 4.34e-13 | 37 |
pancreas | 7.58e-13 | 10 |
respiratory primordium | 1.01e-12 | 38 |
endoderm of foregut | 1.01e-12 | 38 |
thoracic cavity element | 3.91e-11 | 34 |
thoracic cavity | 3.91e-11 | 34 |
thoracic segment organ | 8.57e-11 | 35 |
epithelial fold | 4.48e-10 | 47 |
lower lobe of right lung | 1.43e-09 | 1 |
right lung lobe | 1.43e-09 | 1 |
lower lobe of lung | 1.43e-09 | 1 |
lobe of lung | 1.43e-09 | 1 |
right lung | 1.43e-09 | 1 |
respiratory system | 2.33e-09 | 74 |
thoracic segment of trunk | 4.73e-09 | 52 |
trunk region element | 7.28e-08 | 101 |
viscus | 3.31e-07 | 18 |
respiratory tract epithelium | 4.13e-07 | 19 |
lung epithelium | 4.13e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
lung carcinoma | 7.32e-15 | 9 |
lung large cell carcinoma | 7.92e-12 | 3 |
lung small cell carcinoma | 2.77e-09 | 4 |
lung cancer | 5.58e-09 | 15 |
respiratory system cancer | 2.00e-08 | 16 |
non-small cell lung carcinoma | 1.95e-07 | 5 |