FFCP PHASE1:Hg19::chr16:81478404..81478430,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:81478404..81478430,+
|short_description=p2@CMIP
|description=CAGE_peak_2_at_CMIP_5end
|association_with_transcript=-344bp_to_ENST00000537098,NM_198390,uc0...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=80790 | |EntrezGene=80790 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24319 | |HGNC=24319 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IY22 | |UniProt=Q8IY22 | ||
|association_with_transcript=-344bp_to_ENST00000537098,NM_198390,uc002fgp.2_5end | |||
|cluster_id=chr16:81478404..81478430,+ | |||
|description=CAGE_peak_2_at_CMIP_5end | |||
|id=chr16:81478404..81478430,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.58e-13!172;CL:0000566!1.58e-13!172;CL:0000738!1.26e-12!140;CL:0002032!1.73e-12!165;CL:0000837!1.73e-12!165;CL:0000988!1.62e-11!182;CL:0002057!1.25e-10!42;CL:0000860!2.44e-09!45;CL:0000763!3.06e-09!112;CL:0000049!3.06e-09!112;CL:0002087!1.34e-08!119;CL:0002031!4.22e-08!124;CL:0000766!4.43e-08!76 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.75e-10;33!CL:0002057;2.75e-10;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.20e-14,168;CL:0000738,1.46e-13,136;CL:0002032,2.55e-13,161;CL:0000837,2.55e-13,161;CL:0000988,3.13e-12,177;CL:0000860,1.25e-10,42;CL:0002057,1.25e-10,42;CL:0000763,4.16e-10,108;CL:0000049,4.16e-10,108;CL:0002087,2.18e-09,115;CL:0000766,4.21e-09,72;CL:0002031,7.77e-09,120;CL:0000473,7.38e-08,48;CL:0000234,7.38e-08,48;CL:0000557,3.24e-07,67 | |||
|ontology_enrichment_development_v019=CL:0002057;2.88e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.35e-21!115;UBERON:0001049!1.14e-20!57;UBERON:0005068!1.14e-20!57;UBERON:0006241!1.14e-20!57;UBERON:0007135!1.14e-20!57;UBERON:0001017!3.83e-18!82;UBERON:0005743!1.64e-17!86;UBERON:0003080!6.42e-17!42;UBERON:0002780!1.40e-16!41;UBERON:0001890!1.40e-16!41;UBERON:0006240!1.40e-16!41;UBERON:0002346!2.19e-16!90;UBERON:0002020!5.42e-16!34;UBERON:0003528!5.42e-16!34;UBERON:0002616!9.33e-16!59;UBERON:0001893!2.14e-15!34;UBERON:0000073!2.37e-15!94;UBERON:0001016!2.37e-15!94;UBERON:0003075!2.44e-15!86;UBERON:0007284!2.44e-15!86;UBERON:0001869!2.66e-15!32;UBERON:0002791!7.89e-15!33;UBERON:0002619!9.89e-15!22;UBERON:0000955!1.23e-14!69;UBERON:0006238!1.23e-14!69;UBERON:0000956!6.88e-14!25;UBERON:0000203!6.88e-14!25;UBERON:0001950!1.68e-13!20;UBERON:0003056!4.00e-12!61;UBERON:0002193!7.49e-08!112;UBERON:0000924!2.37e-07!173;UBERON:0006601!2.37e-07!173;UBERON:0002390!3.13e-07!102;UBERON:0003061!3.13e-07!102;UBERON:0000153!7.39e-07!129;UBERON:0007811!7.39e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;9.92e-15;22!UBERON:0000956;6.99e-14;25!UBERON:0000203;6.99e-14;25!UBERON:0001869;9.30e-14;32!UBERON:0003528;1.04e-13;34!UBERON:0002020;1.04e-13;34!UBERON:0001950;1.68e-13;20!UBERON:0002791;1.97e-13;32!UBERON:0001893;2.81e-13;34!UBERON:0002780;3.76e-12;41!UBERON:0001890;3.76e-12;41!UBERON:0000073;2.17e-11;53!UBERON:0002616;2.17e-11;53!UBERON:0000955;2.86e-07;68!UBERON:0001017;6.42e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.51e-20,114;UBERON:0001049,2.54e-20,56;UBERON:0005068,2.54e-20,56;UBERON:0006241,2.54e-20,56;UBERON:0007135,2.54e-20,56;UBERON:0000073,2.14e-19,53;UBERON:0002616,2.14e-19,53;UBERON:0001017,8.34e-18,81;UBERON:0002780,1.40e-16,41;UBERON:0001890,1.40e-16,41;UBERON:0003080,1.40e-16,41;UBERON:0006240,1.40e-16,41;UBERON:0002346,2.80e-16,86;UBERON:0003528,5.42e-16,34;UBERON:0002020,5.42e-16,34;UBERON:0001016,1.63e-15,89;UBERON:0001893,2.14e-15,34;UBERON:0001869,2.66e-15,32;UBERON:0003075,3.11e-15,82;UBERON:0007284,3.11e-15,82;UBERON:0002791,6.13e-15,32;UBERON:0002619,9.89e-15,22;UBERON:0000955,2.60e-14,68;UBERON:0006238,2.60e-14,68;UBERON:0000956,6.88e-14,25;UBERON:0000203,6.88e-14,25;UBERON:0001950,1.68e-13,20;UBERON:0003056,3.24e-12,61;UBERON:0010371,1.51e-10,104;UBERON:0002193,1.28e-08,108;UBERON:0002390,5.35e-08,98;UBERON:0003061,5.35e-08,98;UBERON:0004121,7.42e-07,171;UBERON:0000924,7.42e-07,171;UBERON:0006601,7.42e-07,171 | |||
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| ||
|short_description=p2@CMIP | |||
}} | }} |
Latest revision as of 00:58, 18 September 2015
Short description: | p2@CMIP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CMIP_5end |
Coexpression cluster: | NA |
Association with transcript: | -344bp_to_ENST00000537098, NM_198390, uc002fgp.2_5end |
EntrezGene: | CMIP |
HGNC: | 24319 |
UniProt: | Q8IY22 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.20e-14 | 168 |
leukocyte | 1.46e-13 | 136 |
hematopoietic oligopotent progenitor cell | 2.55e-13 | 161 |
hematopoietic multipotent progenitor cell | 2.55e-13 | 161 |
hematopoietic cell | 3.13e-12 | 177 |
classical monocyte | 1.25e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.25e-10 | 42 |
myeloid cell | 4.16e-10 | 108 |
common myeloid progenitor | 4.16e-10 | 108 |
nongranular leukocyte | 2.18e-09 | 115 |
myeloid leukocyte | 4.21e-09 | 72 |
hematopoietic lineage restricted progenitor cell | 7.77e-09 | 120 |
defensive cell | 7.38e-08 | 48 |
phagocyte | 7.38e-08 | 48 |
granulocyte monocyte progenitor cell | 3.24e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.51e-20 | 114 |
neural tube | 2.54e-20 | 56 |
neural rod | 2.54e-20 | 56 |
future spinal cord | 2.54e-20 | 56 |
neural keel | 2.54e-20 | 56 |
regional part of nervous system | 2.14e-19 | 53 |
regional part of brain | 2.14e-19 | 53 |
central nervous system | 8.34e-18 | 81 |
regional part of forebrain | 1.40e-16 | 41 |
forebrain | 1.40e-16 | 41 |
anterior neural tube | 1.40e-16 | 41 |
future forebrain | 1.40e-16 | 41 |
neurectoderm | 2.80e-16 | 86 |
brain grey matter | 5.42e-16 | 34 |
gray matter | 5.42e-16 | 34 |
nervous system | 1.63e-15 | 89 |
telencephalon | 2.14e-15 | 34 |
cerebral hemisphere | 2.66e-15 | 32 |
neural plate | 3.11e-15 | 82 |
presumptive neural plate | 3.11e-15 | 82 |
regional part of telencephalon | 6.13e-15 | 32 |
regional part of cerebral cortex | 9.89e-15 | 22 |
brain | 2.60e-14 | 68 |
future brain | 2.60e-14 | 68 |
cerebral cortex | 6.88e-14 | 25 |
pallium | 6.88e-14 | 25 |
neocortex | 1.68e-13 | 20 |
pre-chordal neural plate | 3.24e-12 | 61 |
ecto-epithelium | 1.51e-10 | 104 |
hemolymphoid system | 1.28e-08 | 108 |
hematopoietic system | 5.35e-08 | 98 |
blood island | 5.35e-08 | 98 |
ectoderm-derived structure | 7.42e-07 | 171 |
ectoderm | 7.42e-07 | 171 |
presumptive ectoderm | 7.42e-07 | 171 |