FFCP PHASE1:Hg19::chr8:113686674..113686685,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr8:113686674..113686685,- | |||
|coexpression_cluster_id=C195 | |||
|description=CAGE_peak_at_chr8:113686674..113686685,- | |description=CAGE_peak_at_chr8:113686674..113686685,- | ||
|id=chr8:113686674..113686685,- | |id=chr8:113686674..113686685,- | ||
|ontology_enrichment_celltype=CL:0002076!2.03e-24!43;CL:0000223!1.29e-18!59;CL:0000066!8.72e-15!254;CL:0002368!3.00e-14!13;CL:0002621!5.03e-13!3;CL:0000064!1.88e-11!3;CL:0005012!1.88e-11!3;CL:0000067!1.88e-11!3;CL:0002304!1.88e-11!3;CL:0000220!1.65e-10!246;CL:0002321!2.32e-10!248;CL:0002251!3.17e-10!21;CL:0000076!1.75e-07!62;CL:0002202!2.47e-07!9;CL:0002632!2.47e-07!9;CL:0000077!6.29e-07!19 | |ontology_enrichment_celltype=CL:0002076!2.03e-24!43;CL:0000223!1.29e-18!59;CL:0000066!8.72e-15!254;CL:0002368!3.00e-14!13;CL:0002621!5.03e-13!3;CL:0000064!1.88e-11!3;CL:0005012!1.88e-11!3;CL:0000067!1.88e-11!3;CL:0002304!1.88e-11!3;CL:0000220!1.65e-10!246;CL:0002321!2.32e-10!248;CL:0002251!3.17e-10!21;CL:0000076!1.75e-07!62;CL:0002202!2.47e-07!9;CL:0002632!2.47e-07!9;CL:0000077!6.29e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.24e-23;13!CL:0002202;1.09e-15;9!CL:0002632;1.09e-15;9!CL:0000322;2.07e-12;3!CL:0000307;2.74e-12;3!CL:0002621;2.74e-12;3!CL:0002076;2.21e-10;42!CL:0000082;5.83e-08;19!CL:0000077;6.36e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.39e-23,13;CL:0002202,1.22e-15,9;CL:0002632,1.22e-15,9;CL:0002076,3.53e-13,42;CL:0000322,2.07e-12,3;CL:0002621,2.31e-12,3;CL:0000068,3.24e-12,3;CL:0000069,3.24e-12,3;CL:0000307,3.24e-12,3;CL:0000377,3.24e-12,3;CL:0000223,1.06e-09,58;CL:0000082,5.94e-08,19;CL:0000077,6.36e-08,19 | |||
|ontology_enrichment_development_v019=CL:0000377;2.74e-12;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3910;6.48e-18;2!DOID:1324;7.92e-10;15!DOID:0050615;2.83e-09;16!DOID:3908;5.73e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,6.48e-18,2;DOID:1324,8.10e-10,15;DOID:0050615,2.89e-09,16;DOID:3908,5.73e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0001949!5.03e-13!3;UBERON:0003729!1.03e-11!5;UBERON:0001778!1.88e-11!3;UBERON:0001775!1.88e-11!3;UBERON:0001004!3.14e-10!72;UBERON:0003343!9.45e-09!4;UBERON:0004785!9.45e-09!4;UBERON:0000488!1.05e-08!4 | |ontology_enrichment_uberon=UBERON:0001949!5.03e-13!3;UBERON:0003729!1.03e-11!5;UBERON:0001778!1.88e-11!3;UBERON:0001775!1.88e-11!3;UBERON:0001004!3.14e-10!72;UBERON:0003343!9.45e-09!4;UBERON:0004785!9.45e-09!4;UBERON:0000488!1.05e-08!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;6.48e-18;2!UBERON:0002173;6.48e-18;2!UBERON:0002186;6.48e-18;2!UBERON:0004807;2.99e-14;22!UBERON:0004821;2.07e-12;3!UBERON:0007499;2.07e-12;3!UBERON:0003215;2.07e-12;3!UBERON:0010368;2.07e-12;3!UBERON:0009911;2.07e-12;3!UBERON:0002299;2.07e-12;3!UBERON:0006524;2.07e-12;3!UBERON:0008874;2.07e-12;3!UBERON:0002169;2.07e-12;3!UBERON:0004894;2.07e-12;3!UBERON:0001949;2.74e-12;3!UBERON:0000065;2.38e-11;44!UBERON:0007196;7.92e-10;15!UBERON:0001558;7.92e-10;15!UBERON:0009856;1.22e-09;4!UBERON:0005178;4.55e-09;34!UBERON:0002224;4.55e-09;34!UBERON:0005911;3.23e-08;36!UBERON:0001004;3.89e-08;65!UBERON:0005181;5.24e-08;35!UBERON:0004802;5.83e-08;19!UBERON:0000115;5.83e-08;19!UBERON:0000072;1.79e-07;37!UBERON:0002048;5.32e-07;22!UBERON:0000117;5.32e-07;22!UBERON:0000171;5.32e-07;22!UBERON:0000170;5.32e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,6.48e-18,2;UBERON:0002173,6.48e-18,2;UBERON:0002186,6.48e-18,2;UBERON:0004821,2.07e-12,3;UBERON:0003215,2.07e-12,3;UBERON:0010368,2.07e-12,3;UBERON:0009911,2.07e-12,3;UBERON:0002299,2.07e-12,3;UBERON:0006524,2.07e-12,3;UBERON:0008874,2.07e-12,3;UBERON:0002169,2.07e-12,3;UBERON:0004894,2.07e-12,3;UBERON:0001949,2.31e-12,3;UBERON:0001004,1.28e-11,74;UBERON:0004807,2.21e-11,28;UBERON:0000065,2.34e-10,54;UBERON:0007196,8.46e-10,15;UBERON:0001558,8.46e-10,15;UBERON:0005178,1.82e-09,34;UBERON:0002224,1.82e-09,34;UBERON:0005181,3.24e-09,35;UBERON:0008947,1.52e-08,38;UBERON:0003258,1.52e-08,38;UBERON:0004802,5.94e-08,19;UBERON:0000115,5.94e-08,19;UBERON:0000072,4.89e-07,47;UBERON:0002048,5.40e-07,22;UBERON:0000117,5.40e-07,22;UBERON:0000171,5.40e-07,22;UBERON:0000170,5.40e-07,22;UBERON:0005597,5.40e-07,22;UBERON:0000118,5.40e-07,22 | |||
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| ||
|short_description=p@chr8:113686674..113686685,- | |short_description=p@chr8:113686674..113686685,- | ||
}} | }} |
Latest revision as of 14:06, 31 July 2015
Short description: | p@chr8:113686674..113686685, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr8:113686674..113686685, - |
Coexpression cluster: | C195_Small_Gingival_Bronchial_Smooth_mesenchymal_Urothelial_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.39e-23 | 13 |
epithelial cell of tracheobronchial tree | 1.22e-15 | 9 |
epithelial cell of lower respiratory tract | 1.22e-15 | 9 |
endo-epithelial cell | 3.53e-13 | 42 |
pneumocyte | 2.07e-12 | 3 |
gingival epithelial cell | 2.31e-12 | 3 |
duct epithelial cell | 3.24e-12 | 3 |
branched duct epithelial cell | 3.24e-12 | 3 |
tracheal epithelial cell | 3.24e-12 | 3 |
tracheoblast | 3.24e-12 | 3 |
endodermal cell | 1.06e-09 | 58 |
epithelial cell of lung | 5.94e-08 | 19 |
mesothelial cell | 6.36e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 6.48e-18 | 2 |
alveolar duct | 6.48e-18 | 2 |
bronchiole | 6.48e-18 | 2 |
pulmonary alveolus epithelium | 2.07e-12 | 3 |
alveolus | 2.07e-12 | 3 |
pulmonary lobule | 2.07e-12 | 3 |
lobule | 2.07e-12 | 3 |
alveolus of lung | 2.07e-12 | 3 |
alveolar system | 2.07e-12 | 3 |
pulmonary acinus | 2.07e-12 | 3 |
alveolar sac | 2.07e-12 | 3 |
alveolar wall | 2.07e-12 | 3 |
gingival epithelium | 2.31e-12 | 3 |
respiratory system | 1.28e-11 | 74 |
respiratory system epithelium | 2.21e-11 | 28 |
respiratory tract | 2.34e-10 | 54 |
tracheobronchial tree | 8.46e-10 | 15 |
lower respiratory tract | 8.46e-10 | 15 |
thoracic cavity element | 1.82e-09 | 34 |
thoracic cavity | 1.82e-09 | 34 |
thoracic segment organ | 3.24e-09 | 35 |
respiratory primordium | 1.52e-08 | 38 |
endoderm of foregut | 1.52e-08 | 38 |
respiratory tract epithelium | 5.94e-08 | 19 |
lung epithelium | 5.94e-08 | 19 |
segment of respiratory tract | 4.89e-07 | 47 |
lung | 5.40e-07 | 22 |
respiratory tube | 5.40e-07 | 22 |
respiration organ | 5.40e-07 | 22 |
pair of lungs | 5.40e-07 | 22 |
lung primordium | 5.40e-07 | 22 |
lung bud | 5.40e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 6.48e-18 | 2 |
lung cancer | 8.10e-10 | 15 |
respiratory system cancer | 2.89e-09 | 16 |
non-small cell lung carcinoma | 5.73e-08 | 5 |