FFCP PHASE1:Hg19::chr7:97736163..97736190,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22853 | |EntrezGene=22853 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17880 | |HGNC=17880 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IWU2 | |UniProt=Q8IWU2 | ||
|association_with_transcript=-6bp_to_ENST00000297293,NM_014916,uc003upd.1_5end | |association_with_transcript=-6bp_to_ENST00000297293,NM_014916,uc003upd.1_5end | ||
|cluster_id=chr7:97736163..97736190,+ | |||
|coexpression_cluster_id=C4459 | |||
|description=CAGE_peak_1_at_LMTK2_5end | |description=CAGE_peak_1_at_LMTK2_5end | ||
|id=chr7:97736163..97736190,+ | |id=chr7:97736163..97736190,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.15e-08;82 | |||
|ontology_enrichment_disease=DOID:0050687!9.41e-10!143;DOID:305!5.44e-09!106 | |ontology_enrichment_disease=DOID:0050687!9.41e-10!143;DOID:305!5.44e-09!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,9.41e-10,143;DOID:305,5.44e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0007023!8.92e-36!115;UBERON:0001049!1.63e-21!57;UBERON:0005068!1.63e-21!57;UBERON:0006241!1.63e-21!57;UBERON:0007135!1.63e-21!57;UBERON:0001017!3.55e-19!82;UBERON:0003080!9.32e-19!42;UBERON:0002780!1.07e-18!41;UBERON:0001890!1.07e-18!41;UBERON:0006240!1.07e-18!41;UBERON:0005743!3.37e-18!86;UBERON:0000955!3.49e-18!69;UBERON:0006238!3.49e-18!69;UBERON:0000073!6.28e-18!94;UBERON:0001016!6.28e-18!94;UBERON:0002616!8.88e-18!59;UBERON:0001893!1.39e-15!34;UBERON:0002020!1.45e-15!34;UBERON:0003528!1.45e-15!34;UBERON:0001869!2.15e-15!32;UBERON:0002791!5.85e-15!33;UBERON:0002346!6.24e-15!90;UBERON:0002619!6.43e-15!22;UBERON:0003075!1.02e-14!86;UBERON:0007284!1.02e-14!86;UBERON:0001950!7.53e-14!20;UBERON:0000956!6.44e-12!25;UBERON:0000203!6.44e-12!25;UBERON:0003056!2.03e-11!61;UBERON:0000153!2.57e-09!129;UBERON:0007811!2.57e-09!129;UBERON:0000033!3.53e-08!123;UBERON:0000924!7.29e-08!173;UBERON:0006601!7.29e-08!173;UBERON:0004121!1.38e-07!169 | |ontology_enrichment_uberon=UBERON:0007023!8.92e-36!115;UBERON:0001049!1.63e-21!57;UBERON:0005068!1.63e-21!57;UBERON:0006241!1.63e-21!57;UBERON:0007135!1.63e-21!57;UBERON:0001017!3.55e-19!82;UBERON:0003080!9.32e-19!42;UBERON:0002780!1.07e-18!41;UBERON:0001890!1.07e-18!41;UBERON:0006240!1.07e-18!41;UBERON:0005743!3.37e-18!86;UBERON:0000955!3.49e-18!69;UBERON:0006238!3.49e-18!69;UBERON:0000073!6.28e-18!94;UBERON:0001016!6.28e-18!94;UBERON:0002616!8.88e-18!59;UBERON:0001893!1.39e-15!34;UBERON:0002020!1.45e-15!34;UBERON:0003528!1.45e-15!34;UBERON:0001869!2.15e-15!32;UBERON:0002791!5.85e-15!33;UBERON:0002346!6.24e-15!90;UBERON:0002619!6.43e-15!22;UBERON:0003075!1.02e-14!86;UBERON:0007284!1.02e-14!86;UBERON:0001950!7.53e-14!20;UBERON:0000956!6.44e-12!25;UBERON:0000203!6.44e-12!25;UBERON:0003056!2.03e-11!61;UBERON:0000153!2.57e-09!129;UBERON:0007811!2.57e-09!129;UBERON:0000033!3.53e-08!123;UBERON:0000924!7.29e-08!173;UBERON:0006601!7.29e-08!173;UBERON:0004121!1.38e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0002619;6.42e-15;22!UBERON:0001869;6.22e-14;32!UBERON:0001950;7.57e-14;20!UBERON:0002780;8.97e-14;41!UBERON:0001890;8.97e-14;41!UBERON:0001893;1.68e-13;34!UBERON:0003528;1.68e-13;34!UBERON:0002020;1.68e-13;34!UBERON:0002791;1.97e-13;32!UBERON:0000073;3.64e-12;53!UBERON:0002616;3.64e-12;53!UBERON:0000956;5.82e-12;25!UBERON:0000203;5.82e-12;25!UBERON:0007023;1.35e-10;114!UBERON:0000955;3.93e-09;68!UBERON:0001017;1.05e-08;75!UBERON:0001016;2.96e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.84e-35,114;UBERON:0001049,2.02e-21,56;UBERON:0005068,2.02e-21,56;UBERON:0006241,2.02e-21,56;UBERON:0007135,2.02e-21,56;UBERON:0000073,3.77e-21,53;UBERON:0002616,3.77e-21,53;UBERON:0001017,4.89e-19,81;UBERON:0002780,1.07e-18,41;UBERON:0001890,1.07e-18,41;UBERON:0003080,1.07e-18,41;UBERON:0006240,1.07e-18,41;UBERON:0001016,1.17e-18,89;UBERON:0000955,4.70e-18,68;UBERON:0006238,4.70e-18,68;UBERON:0011216,8.11e-16,223;UBERON:0001893,1.39e-15,34;UBERON:0003528,1.45e-15,34;UBERON:0002020,1.45e-15,34;UBERON:0001869,2.15e-15,32;UBERON:0002619,6.43e-15,22;UBERON:0002791,9.24e-15,32;UBERON:0001950,7.53e-14,20;UBERON:0002346,1.16e-13,86;UBERON:0003075,1.92e-13,82;UBERON:0007284,1.92e-13,82;UBERON:0000956,6.44e-12,25;UBERON:0000203,6.44e-12,25;UBERON:0003056,1.27e-11,61;UBERON:0010371,7.42e-09,104;UBERON:0004121,7.04e-07,171;UBERON:0000924,7.04e-07,171;UBERON:0006601,7.04e-07,171 | |||
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4.16739039994203 | ||
|short_description=p1@LMTK2 | |short_description=p1@LMTK2 | ||
}} | }} |
Latest revision as of 06:39, 20 September 2015
Short description: | p1@LMTK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LMTK2_5end |
Coexpression cluster: | C4459_Eosinophils_Neutrophils_CD14_occipital_postcentral_parietal_medial |
Association with transcript: | -6bp_to_ENST00000297293, NM_014916, uc003upd.1_5end |
EntrezGene: | LMTK2 |
HGNC: | 17880 |
UniProt: | Q8IWU2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.84e-35 | 114 |
neural tube | 2.02e-21 | 56 |
neural rod | 2.02e-21 | 56 |
future spinal cord | 2.02e-21 | 56 |
neural keel | 2.02e-21 | 56 |
regional part of nervous system | 3.77e-21 | 53 |
regional part of brain | 3.77e-21 | 53 |
central nervous system | 4.89e-19 | 81 |
regional part of forebrain | 1.07e-18 | 41 |
forebrain | 1.07e-18 | 41 |
anterior neural tube | 1.07e-18 | 41 |
future forebrain | 1.07e-18 | 41 |
nervous system | 1.17e-18 | 89 |
brain | 4.70e-18 | 68 |
future brain | 4.70e-18 | 68 |
organ system subdivision | 8.11e-16 | 223 |
telencephalon | 1.39e-15 | 34 |
brain grey matter | 1.45e-15 | 34 |
gray matter | 1.45e-15 | 34 |
cerebral hemisphere | 2.15e-15 | 32 |
regional part of cerebral cortex | 6.43e-15 | 22 |
regional part of telencephalon | 9.24e-15 | 32 |
neocortex | 7.53e-14 | 20 |
neurectoderm | 1.16e-13 | 86 |
neural plate | 1.92e-13 | 82 |
presumptive neural plate | 1.92e-13 | 82 |
cerebral cortex | 6.44e-12 | 25 |
pallium | 6.44e-12 | 25 |
pre-chordal neural plate | 1.27e-11 | 61 |
ecto-epithelium | 7.42e-09 | 104 |
ectoderm-derived structure | 7.04e-07 | 171 |
ectoderm | 7.04e-07 | 171 |
presumptive ectoderm | 7.04e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 9.41e-10 | 143 |
carcinoma | 5.44e-09 | 106 |