FFCP PHASE1:Hg19::chr6:70577199..70577222,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1310 | |EntrezGene=1310 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2196 | |HGNC=2196 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-218bp_to_ENST00000476656,ENST00000478620_5end | |association_with_transcript=-218bp_to_ENST00000476656,ENST00000478620_5end | ||
|cluster_id=chr6:70577199..70577222,+ | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_4_at_COL19A1_5end | |description=CAGE_peak_4_at_COL19A1_5end | ||
|id=chr6:70577199..70577222,+ | |id=chr6:70577199..70577222,+ | ||
|ontology_enrichment_celltype=CL:0000945!1.91e-19!24;CL:0000826!1.91e-19!24;CL:0000236!1.60e-16!14;CL:0000542!4.12e-08!53;CL:0000051!4.12e-08!53;CL:0000080!1.15e-07!6;CL:0000838!1.39e-07!52 | |ontology_enrichment_celltype=CL:0000945!1.91e-19!24;CL:0000826!1.91e-19!24;CL:0000236!1.60e-16!14;CL:0000542!4.12e-08!53;CL:0000051!4.12e-08!53;CL:0000080!1.15e-07!6;CL:0000838!1.39e-07!52 | ||
|ontology_enrichment_celltype_v019=CL:0000236;1.69e-59;13!CL:0000945;7.26e-55;24!CL:0000542;3.87e-17;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,3.97e-55,14;CL:0000945,8.52e-55,24;CL:0000826,8.52e-55,24;CL:0000838,2.27e-23,52;CL:0000542,7.30e-23,53;CL:0000051,7.30e-23,53;CL:0002087,1.46e-08,115;CL:0002031,4.53e-08,120;CL:0000988,8.33e-07,177;CL:0000738,9.58e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000051;3.87e-17;53!UBERON:0006215;1.65e-16;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.61e-24!115;UBERON:0000178!3.01e-10!15;UBERON:0000179!3.01e-10!15;UBERON:0000463!3.01e-10!15;UBERON:0001049!8.64e-09!57;UBERON:0005068!8.64e-09!57;UBERON:0006241!8.64e-09!57;UBERON:0007135!8.64e-09!57;UBERON:0002616!3.11e-08!59;UBERON:0001950!1.55e-07!20;UBERON:0002619!1.59e-07!22;UBERON:0002020!2.86e-07!34;UBERON:0003528!2.86e-07!34;UBERON:0001869!3.39e-07!32;UBERON:0002780!3.88e-07!41;UBERON:0001890!3.88e-07!41;UBERON:0006240!3.88e-07!41;UBERON:0000955!4.78e-07!69;UBERON:0006238!4.78e-07!69;UBERON:0003080!7.68e-07!42 | |ontology_enrichment_uberon=UBERON:0007023!9.61e-24!115;UBERON:0000178!3.01e-10!15;UBERON:0000179!3.01e-10!15;UBERON:0000463!3.01e-10!15;UBERON:0001049!8.64e-09!57;UBERON:0005068!8.64e-09!57;UBERON:0006241!8.64e-09!57;UBERON:0007135!8.64e-09!57;UBERON:0002616!3.11e-08!59;UBERON:0001950!1.55e-07!20;UBERON:0002619!1.59e-07!22;UBERON:0002020!2.86e-07!34;UBERON:0003528!2.86e-07!34;UBERON:0001869!3.39e-07!32;UBERON:0002780!3.88e-07!41;UBERON:0001890!3.88e-07!41;UBERON:0006240!3.88e-07!41;UBERON:0000955!4.78e-07!69;UBERON:0006238!4.78e-07!69;UBERON:0003080!7.68e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.68e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.79e-08,6;UBERON:0006215,1.79e-08,6 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,1.14620108621927,1.47781061009902,1.18066171970519,0,0,0.154816123316076,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0.28769239232215,0.256160706529101,0,0,0,0,0,0,0,0,0.962787081228281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51992488922645,6.00752472388345,7.11607403090844,10.6682555641627,7.20712776664822,5.74752439954483,9.25462821898807,4.77026877267682,14.2303242277362,14.6809297342735,9.55683070313072,0,0.560508562981536,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0.486634870302636,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0,0,0,0,0,0.122834317311768,0.413303124703062,0,0,0,0,0.168336113954066,0,0,0,0,0.150238058906597,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381988425558278,1.17217447210047,0,0.102827492703324,0,0.285826432630578,0,0,0,0,0,0,0.531876233169741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0,1.30139853857622,0,0.335032530668698,0,0,0,0,0,0,0,0.207970861530807,0,0.630809660135739,0.117141414992713,0,0,0,0,0,0.173767228936166,0.195801157462741,0,0.82707210449155,0.862856803274467,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0.616194468458578,0.15350367472613,0,0.214840489736547,0.725083469571143,0.170453254832202,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0.569647187174163,0.714695326373367,1.23408681925858,0,0.540031437238115,0.79312517629427,0,0,0,0.371606350251437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.562677665642051,0.111308705022906,0.659215496907038,0,0.19924798825107,0.552567831062295,0,0.409074730008619,1.10776324914963,0,0,0,0,0.591860433821602,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0.520874984799877,0,0.361789315876224,4.5774520895125,1.10579259931225,1.47773809476774,0.658156191461918,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.176915129006678,1.22206028986725,1.48260564340311,1.11207545051853,1.14864144456001,0,0,0,1.27718352450966,0,0,0,0,0,0,0.60129367765797,0.103688191397247,0,3.64091151463049,1.2557316736289,1.19472429772959,0,0,0,0,0,0.17472666824203,0.171986032471617,0,0,0,0.387956065953678,0,0,0,0,0.379864775735272,0,0.160317640503067,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0.717873024576814,0,0,0.223171457441873,0.268733889946905,0,0,0,0,0,0.196854963029498,0.423366660328922,0,0.136203406111576,0,0,0,0.674921674654501,0,0.485996453264197,0,0.0788057072991982,0.314727528809989,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0.170388021785422,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0.314408610199332,0,0,0.197611631897944,0,0,0,0,0,0,0,0.886068179966986,0.366078794705889,0.1251909307065,0,0.110929051536852,0.0620964029413835,0,0,0,1.99825733481477,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,1.96565909307848,0.245772908753719,0,0.19998739585493,0.213383459388282,0,0,0,0,0,0.127894371303652,0,0.157265941855896,0,0,0,1.11542187833102,0,0,0.0788617450012534,0,0,0,0.321146125482298,1.41696576325585,0.159633859057151,1.02558182120378,0,0.207471757392654,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0.253663240775627,0,0,0.496211178389294,0,0,0.535701835878287,0,0,0.682986574053893,0,0.921871900446234,0.685952037749674,0.135939465953663,0.526182188502793,0,0,0.549451649953598,0.157115589916002,0,2.73947616152849,0,0,0.142953088353313,0,0,0.173858272302579,0.801711364730253,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0.410651227424988,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,1.47088993052343,0,0,0,0,0,0.751871343838829,0.902410431630081,0.499705779624645,0,0,0,0,0,0,0,0.271965960763659,0,0.5290268405154,0,0,0,0,0,0.126698501011437,0,0,0,0,0.227336094654718,0,0.829169439458779,0,0.213233981900981,0.476128862927481,0.452122368852043,0.993195428733726,0,0,0,0,1.02669990325584,0.336760265072938,0.143444410785353,0,0,0.106727345877715,0,0,0,0,0.406896178315738,0.665756774185513,2.61655931668334,0.320568492303233 | |phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,1.14620108621927,1.47781061009902,1.18066171970519,0,0,0.154816123316076,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0.28769239232215,0.256160706529101,0,0,0,0,0,0,0,0,0.962787081228281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51992488922645,6.00752472388345,7.11607403090844,10.6682555641627,7.20712776664822,5.74752439954483,9.25462821898807,4.77026877267682,14.2303242277362,14.6809297342735,9.55683070313072,0,0.560508562981536,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0.486634870302636,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0,0,0,0,0,0.122834317311768,0.413303124703062,0,0,0,0,0.168336113954066,0,0,0,0,0.150238058906597,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381988425558278,1.17217447210047,0,0.102827492703324,0,0.285826432630578,0,0,0,0,0,0,0.531876233169741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0,1.30139853857622,0,0.335032530668698,0,0,0,0,0,0,0,0.207970861530807,0,0.630809660135739,0.117141414992713,0,0,0,0,0,0.173767228936166,0.195801157462741,0,0.82707210449155,0.862856803274467,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0.616194468458578,0.15350367472613,0,0.214840489736547,0.725083469571143,0.170453254832202,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0.569647187174163,0.714695326373367,1.23408681925858,0,0.540031437238115,0.79312517629427,0,0,0,0.371606350251437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.562677665642051,0.111308705022906,0.659215496907038,0,0.19924798825107,0.552567831062295,0,0.409074730008619,1.10776324914963,0,0,0,0,0.591860433821602,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0.520874984799877,0,0.361789315876224,4.5774520895125,1.10579259931225,1.47773809476774,0.658156191461918,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.176915129006678,1.22206028986725,1.48260564340311,1.11207545051853,1.14864144456001,0,0,0,1.27718352450966,0,0,0,0,0,0,0.60129367765797,0.103688191397247,0,3.64091151463049,1.2557316736289,1.19472429772959,0,0,0,0,0,0.17472666824203,0.171986032471617,0,0,0,0.387956065953678,0,0,0,0,0.379864775735272,0,0.160317640503067,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0.717873024576814,0,0,0.223171457441873,0.268733889946905,0,0,0,0,0,0.196854963029498,0.423366660328922,0,0.136203406111576,0,0,0,0.674921674654501,0,0.485996453264197,0,0.0788057072991982,0.314727528809989,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0.170388021785422,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0.314408610199332,0,0,0.197611631897944,0,0,0,0,0,0,0,0.886068179966986,0.366078794705889,0.1251909307065,0,0.110929051536852,0.0620964029413835,0,0,0,1.99825733481477,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,1.96565909307848,0.245772908753719,0,0.19998739585493,0.213383459388282,0,0,0,0,0,0.127894371303652,0,0.157265941855896,0,0,0,1.11542187833102,0,0,0.0788617450012534,0,0,0,0.321146125482298,1.41696576325585,0.159633859057151,1.02558182120378,0,0.207471757392654,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0.253663240775627,0,0,0.496211178389294,0,0,0.535701835878287,0,0,0.682986574053893,0,0.921871900446234,0.685952037749674,0.135939465953663,0.526182188502793,0,0,0.549451649953598,0.157115589916002,0,2.73947616152849,0,0,0.142953088353313,0,0,0.173858272302579,0.801711364730253,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0.410651227424988,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,1.47088993052343,0,0,0,0,0,0.751871343838829,0.902410431630081,0.499705779624645,0,0,0,0,0,0,0,0.271965960763659,0,0.5290268405154,0,0,0,0,0,0.126698501011437,0,0,0,0,0.227336094654718,0,0.829169439458779,0,0.213233981900981,0.476128862927481,0.452122368852043,0.993195428733726,0,0,0,0,1.02669990325584,0.336760265072938,0.143444410785353,0,0,0.106727345877715,0,0,0,0,0.406896178315738,0.665756774185513,2.61655931668334,0.320568492303233 | ||
|short_description=p4@COL19A1 | |short_description=p4@COL19A1 | ||
}} | }} |
Latest revision as of 15:18, 19 September 2015
Short description: | p4@COL19A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_COL19A1_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | -218bp_to_ENST00000476656, ENST00000478620_5end |
EntrezGene: | COL19A1 |
HGNC: | 2196 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 3.97e-55 | 14 |
lymphocyte of B lineage | 8.52e-55 | 24 |
pro-B cell | 8.52e-55 | 24 |
lymphoid lineage restricted progenitor cell | 2.27e-23 | 52 |
lymphocyte | 7.30e-23 | 53 |
common lymphoid progenitor | 7.30e-23 | 53 |
nongranular leukocyte | 1.46e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 4.53e-08 | 120 |
hematopoietic cell | 8.33e-07 | 177 |
leukocyte | 9.58e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.79e-08 | 6 |
rhombic lip | 1.79e-08 | 6 |