FFCP PHASE1:Hg19::chr16:4431001..4431014,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:4431001..4431014,+
|short_description=p4@VASN
|description=CAGE_peak_4_at_VASN_5end
|association_with_transcript=-80bp_to_BC013767_5end
|EntrezGene=11499...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=114990 | |EntrezGene=114990 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=18517 | |HGNC=18517 | ||
|TSSclassifier=strong | |||
|UniProt=Q6EMK4 | |UniProt=Q6EMK4 | ||
|association_with_transcript=-80bp_to_BC013767_5end | |||
|cluster_id=chr16:4431001..4431014,+ | |||
|coexpression_cluster_id=C351 | |||
|description=CAGE_peak_4_at_VASN_5end | |||
|id=chr16:4431001..4431014,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.56e-22!180;CL:0000057!8.80e-19!75;CL:0002620!6.25e-12!23;CL:0000680!8.61e-08!57;CL:0000056!8.61e-08!57;CL:0000355!8.61e-08!57;CL:0002334!2.02e-07!12;CL:0000187!8.08e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0000499;1.38e-11;28!CL:0002334;6.48e-10;12!CL:0000135;7.84e-10;3!CL:0000388;7.84e-10;3!CL:0002620;5.91e-09;23!CL:0000153;1.25e-07;9!CL:0000447;1.25e-07;9!CL:0002320;5.04e-07;188!CL:0000134;5.28e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.87e-18,76;CL:0000048,3.54e-12,427;CL:0000723,8.61e-12,433;CL:0000499,9.43e-12,28;CL:0000034,2.71e-11,441;CL:0002320,4.40e-11,361;CL:0000134,2.95e-10,354;CL:0000135,7.51e-10,3;CL:0000388,7.51e-10,3;CL:0002334,1.03e-09,12;CL:0002620,3.86e-09,23;CL:0000219,3.37e-08,386;CL:0000153,9.62e-08,9;CL:0000447,9.62e-08,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.00e-09!83;UBERON:0002329!2.00e-09!83;UBERON:0003077!2.00e-09!83;UBERON:0003059!2.00e-09!83;UBERON:0007282!2.00e-09!83;UBERON:0009618!2.00e-09!83;UBERON:0007285!2.00e-09!83;UBERON:0004923!6.02e-09!57;UBERON:0004290!1.93e-08!70;UBERON:0002097!2.70e-07!40;UBERON:0002199!4.37e-07!45;UBERON:0002416!4.37e-07!45;UBERON:0000475!4.68e-07!365;UBERON:0002100!5.28e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;7.84e-10;3!UBERON:0000043;7.84e-10;3!UBERON:0007845;7.84e-10;3!UBERON:0004457;1.99e-07;9!UBERON:0000042;1.99e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.08e-10,371;UBERON:0007846,7.51e-10,3;UBERON:0000043,7.51e-10,3;UBERON:0007845,7.51e-10,3 | |||
|phase1_expression=1.45342703416445,2.14100523890983,0.704772020479856,2.00146596706261,0.893922188854576,2.61701557230111,0,0,0,0,0,0.218441372130172,0.263766978228454,0.37129905888014,1.65698687863958,2.01697543935533,1.20538905604795,0.730310090387373,0,0.123121058076788,0.204000691244253,0.313454721478088,0,0.273748850145768,0.125542639594803,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,2.89151321907653,1.50401373190767,2.89693037921647,0,0,0.283604451492204,0.443458794925128,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759783069987479,0.264818361626438,4.87622255272983,0.354668382198357,1.68203280042692,0,0.24666754841716,0,0.134710672069688,0,0,0.576175924479999,0,1.5608003841516,0,0.896692083310806,0.23486899728753,0.323745888736263,0.421352420106746,0.204154171254893,0.491337269247072,0.413303124703062,0,2.71993622206413,0,2.15585442544872,0,0.375355559615893,0,0.877955241761676,3.0648779579902,1.35214253015937,0,0.358779271377724,0.427114777637135,0.211931901159562,1.80054657650641,0.824420233907511,1.03056216018252,1.11670113798954,1.85653965465393,1.94874010322397,1.51460264546469,0.736399189138395,1.61646056818812,2.4850671476163,0.201504196455281,1.18692414617341,0,0,0,0.243947412259191,0,0.232387885739037,0,0,0,1.56449532329816,4.5026865673502,0,0.928735856063958,0.721879481669586,0.236613600079688,0.168584690078102,0,0.330881918197182,0,0.237270619111097,0.134831308160164,0,0,0,0,0,1.47008711385542,0,0.982827216677626,0,0,0,0.171567810298526,0,0,0,0.185176890317059,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,0,0,0,0,0,0.12624243342638,0,0,0,0,0.308482478109971,0,0,0,0,0.07333828582095,0.387815147273333,3.57656445851882,0.845302752556,1.06375246633948,2.08014873822732,0.257207374262142,0,0.532844358032199,1.57275793023962,1.08524321078289,0,0,0.355391948742546,0,0.301439377059586,0,0.299918973546171,0,0,0,0.958499421966331,1.14861935834114,0,1.15825045334063,0.821905290201534,0.179060963239896,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,1.10422342547226,0,0.542530047399471,1.24782516918484,4.10386674233472,2.20783381047509,0.937131319941706,0.300946099727719,0,2.0694614258501,0,0.184369168541703,1.39013783148933,0.391602314925481,0.686286847621712,0,0,0,0.909382714338778,0,0.30239029332968,1.24053903909388,0.460385919864187,3.92924132206303,1.02511319404561,0.511707249066704,1.28683136914886,0,2.31314540703983,0.710246901252508,0.657017248110473,2.59627214591811,1.39452454151951,0,0,0,0.574072240823034,2.54927635209404,1.57349297951309,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0.412164046590889,0.915694648183434,0.247528499761764,0,0,0,0.580024309752732,0.462145851343933,0.614014698904518,0.413509717453592,0.537101224341368,1.16013355131383,0.681813019328807,0.178064071293475,0.330569830721956,0.576570202095319,0,0.10115778085555,0,3.1481234683064,0,0.308033580176089,0,0,0,0.429374660225974,0,0.316379424718726,0.38126038784765,0.767693373934002,0,0,0,0.719489830333259,0.823611089208164,0.589062011728432,0,0,0,1.46290121726877,0.243713489631284,1.05650146756755,0.9554993798559,2.96951407102797,0,0.551365343546124,1.32687795048244,1.75380354101505,0,0.655894752046633,0.202910376962704,0,0,0.143411352204052,0.0982490410131212,0,0.709522128141196,3.37772216476263,3.29294892959902,0,0,0.0962221127255121,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0.47748896947538,0,1.22864280839693,0.994147647766298,0.140669416410513,0,0,0,0.796991953004279,0.276283915531148,0.251932747854276,0,0,0.311039587661807,0,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0.520855522170466,0,0,0,0,0.236387681767936,0,0,0,0.885741385813839,0,0,0.110579259931225,0,0.219385397153973,0,0,0.461701551022782,0.227884111694002,0,0,0,0.638002319463839,0.274792780205587,0.533034776018635,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252746318513952,0.150323419414493,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0.290967049465258,0,0.677942222341597,0,0,0,0,0.0801588202515337,0.426905989478705,0,0,0,0.171594997861965,0,0,0.235694034616795,0.135904206073614,0.104602846312333,0,0.288950589901519,0,0,0,0.429765441419957,0,0,0,0.717873024576814,0.399358000997982,0.429226048136571,0,0,0.360299883542404,0,0.315132729228895,0.0824158583811665,0.202210631562555,0,0,0.795229689809303,0,0.321506296930038,0.137539436597234,0,0,0,0.0607495566580247,0,0.236417121897595,0.367182116944987,0,0.35857467866569,0,0,0,0,1.62899880526114,0.864221491201268,1.95952416065645,1.19730191562487,0,0.170388021785422,0.113312091520126,0,1.32506888912221,0,0,0,0.704815022316672,0.106787412567695,0.314408610199332,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0.573409195690071,0,0.124192805882767,0,0,0,0,0.470531639396343,0,0,1.49254802886874,0.233713309847224,1.66441758450784,0.189403005275089,1.50940741051545,1.77962244319307,0.686520205190771,1.36107831386915,0.621748802331122,0.443565449968902,0,0.449803112163605,0.155262956876259,0.414706207840855,0.53168342911599,0.521745061811734,0.300515217994437,1.90402606084398,0.406870733204662,0.363697318405119,0.214821114084977,0,0.796191777397232,0.400027764663154,0.686791410365586,1.01024846629776,0,0,1.07220795687463,1.30497145982606,0.226705925512272,0,0.489473409012935,0.179088841081487,0.926404341482917,0.219284049578707,0.176689145945881,0.38582807654183,0.506827321959218,0,0.690860683462397,0.607719912354764,0,0,0,0,0.327609848846413,0.983091635014877,0,0,0,0,0.567515953566836,0.920529751259204,0,0,0,0,0,0.218419276384028,0,0,0,0,0,0,0,2.46873160583479,2.7562092961788,0.0642292250964595,0,0,0,0.252071696221718,0,0,0,0,0,0.366857197043358,0.115525666150338,0.762764190934334,0,0,0.0752103283492573,0,0,0,0.327543835020193,0,0,0,0.206686796501184,0,0,0,0.496211178389294,0,0.127762427639595,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0.078493092850514,0.157115589916002,0,0,0.215927591218621,0,0.214429632529969,0,0,0,0,0,0.17071847709395,0,0,0,0.0852134047591577,0,0.68732060563215,0,0,0.335566295393377,0,0,0,0,0,0.485710993059139,0,0.198950775161368,0.118920090777569,0,0,0,0,0.218559560503957,0,0.245148321753905,0,0.196308467114945,0,0.8453114551668,0.849635573439084,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,6.69591032700152,5.0839319149456,3.8936390591141,0,0.109265571963696,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,0.426467963801962,0,0,0,0.112131862580613,0.0636471582781649,0,0,0,0.134704106029175,0.0717222053926763,0,0,0,0,0,0,0,0.813792356631477,0,0.402547587182052,0 | |phase1_expression=1.45342703416445,2.14100523890983,0.704772020479856,2.00146596706261,0.893922188854576,2.61701557230111,0,0,0,0,0,0.218441372130172,0.263766978228454,0.37129905888014,1.65698687863958,2.01697543935533,1.20538905604795,0.730310090387373,0,0.123121058076788,0.204000691244253,0.313454721478088,0,0.273748850145768,0.125542639594803,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,2.89151321907653,1.50401373190767,2.89693037921647,0,0,0.283604451492204,0.443458794925128,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759783069987479,0.264818361626438,4.87622255272983,0.354668382198357,1.68203280042692,0,0.24666754841716,0,0.134710672069688,0,0,0.576175924479999,0,1.5608003841516,0,0.896692083310806,0.23486899728753,0.323745888736263,0.421352420106746,0.204154171254893,0.491337269247072,0.413303124703062,0,2.71993622206413,0,2.15585442544872,0,0.375355559615893,0,0.877955241761676,3.0648779579902,1.35214253015937,0,0.358779271377724,0.427114777637135,0.211931901159562,1.80054657650641,0.824420233907511,1.03056216018252,1.11670113798954,1.85653965465393,1.94874010322397,1.51460264546469,0.736399189138395,1.61646056818812,2.4850671476163,0.201504196455281,1.18692414617341,0,0,0,0.243947412259191,0,0.232387885739037,0,0,0,1.56449532329816,4.5026865673502,0,0.928735856063958,0.721879481669586,0.236613600079688,0.168584690078102,0,0.330881918197182,0,0.237270619111097,0.134831308160164,0,0,0,0,0,1.47008711385542,0,0.982827216677626,0,0,0,0.171567810298526,0,0,0,0.185176890317059,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,0,0,0,0,0,0.12624243342638,0,0,0,0,0.308482478109971,0,0,0,0,0.07333828582095,0.387815147273333,3.57656445851882,0.845302752556,1.06375246633948,2.08014873822732,0.257207374262142,0,0.532844358032199,1.57275793023962,1.08524321078289,0,0,0.355391948742546,0,0.301439377059586,0,0.299918973546171,0,0,0,0.958499421966331,1.14861935834114,0,1.15825045334063,0.821905290201534,0.179060963239896,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,1.10422342547226,0,0.542530047399471,1.24782516918484,4.10386674233472,2.20783381047509,0.937131319941706,0.300946099727719,0,2.0694614258501,0,0.184369168541703,1.39013783148933,0.391602314925481,0.686286847621712,0,0,0,0.909382714338778,0,0.30239029332968,1.24053903909388,0.460385919864187,3.92924132206303,1.02511319404561,0.511707249066704,1.28683136914886,0,2.31314540703983,0.710246901252508,0.657017248110473,2.59627214591811,1.39452454151951,0,0,0,0.574072240823034,2.54927635209404,1.57349297951309,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0.412164046590889,0.915694648183434,0.247528499761764,0,0,0,0.580024309752732,0.462145851343933,0.614014698904518,0.413509717453592,0.537101224341368,1.16013355131383,0.681813019328807,0.178064071293475,0.330569830721956,0.576570202095319,0,0.10115778085555,0,3.1481234683064,0,0.308033580176089,0,0,0,0.429374660225974,0,0.316379424718726,0.38126038784765,0.767693373934002,0,0,0,0.719489830333259,0.823611089208164,0.589062011728432,0,0,0,1.46290121726877,0.243713489631284,1.05650146756755,0.9554993798559,2.96951407102797,0,0.551365343546124,1.32687795048244,1.75380354101505,0,0.655894752046633,0.202910376962704,0,0,0.143411352204052,0.0982490410131212,0,0.709522128141196,3.37772216476263,3.29294892959902,0,0,0.0962221127255121,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0.47748896947538,0,1.22864280839693,0.994147647766298,0.140669416410513,0,0,0,0.796991953004279,0.276283915531148,0.251932747854276,0,0,0.311039587661807,0,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0.520855522170466,0,0,0,0,0.236387681767936,0,0,0,0.885741385813839,0,0,0.110579259931225,0,0.219385397153973,0,0,0.461701551022782,0.227884111694002,0,0,0,0.638002319463839,0.274792780205587,0.533034776018635,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252746318513952,0.150323419414493,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0.290967049465258,0,0.677942222341597,0,0,0,0,0.0801588202515337,0.426905989478705,0,0,0,0.171594997861965,0,0,0.235694034616795,0.135904206073614,0.104602846312333,0,0.288950589901519,0,0,0,0.429765441419957,0,0,0,0.717873024576814,0.399358000997982,0.429226048136571,0,0,0.360299883542404,0,0.315132729228895,0.0824158583811665,0.202210631562555,0,0,0.795229689809303,0,0.321506296930038,0.137539436597234,0,0,0,0.0607495566580247,0,0.236417121897595,0.367182116944987,0,0.35857467866569,0,0,0,0,1.62899880526114,0.864221491201268,1.95952416065645,1.19730191562487,0,0.170388021785422,0.113312091520126,0,1.32506888912221,0,0,0,0.704815022316672,0.106787412567695,0.314408610199332,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0.573409195690071,0,0.124192805882767,0,0,0,0,0.470531639396343,0,0,1.49254802886874,0.233713309847224,1.66441758450784,0.189403005275089,1.50940741051545,1.77962244319307,0.686520205190771,1.36107831386915,0.621748802331122,0.443565449968902,0,0.449803112163605,0.155262956876259,0.414706207840855,0.53168342911599,0.521745061811734,0.300515217994437,1.90402606084398,0.406870733204662,0.363697318405119,0.214821114084977,0,0.796191777397232,0.400027764663154,0.686791410365586,1.01024846629776,0,0,1.07220795687463,1.30497145982606,0.226705925512272,0,0.489473409012935,0.179088841081487,0.926404341482917,0.219284049578707,0.176689145945881,0.38582807654183,0.506827321959218,0,0.690860683462397,0.607719912354764,0,0,0,0,0.327609848846413,0.983091635014877,0,0,0,0,0.567515953566836,0.920529751259204,0,0,0,0,0,0.218419276384028,0,0,0,0,0,0,0,2.46873160583479,2.7562092961788,0.0642292250964595,0,0,0,0.252071696221718,0,0,0,0,0,0.366857197043358,0.115525666150338,0.762764190934334,0,0,0.0752103283492573,0,0,0,0.327543835020193,0,0,0,0.206686796501184,0,0,0,0.496211178389294,0,0.127762427639595,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0.078493092850514,0.157115589916002,0,0,0.215927591218621,0,0.214429632529969,0,0,0,0,0,0.17071847709395,0,0,0,0.0852134047591577,0,0.68732060563215,0,0,0.335566295393377,0,0,0,0,0,0.485710993059139,0,0.198950775161368,0.118920090777569,0,0,0,0,0.218559560503957,0,0.245148321753905,0,0.196308467114945,0,0.8453114551668,0.849635573439084,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,6.69591032700152,5.0839319149456,3.8936390591141,0,0.109265571963696,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,0.426467963801962,0,0,0,0.112131862580613,0.0636471582781649,0,0,0,0.134704106029175,0.0717222053926763,0,0,0,0,0,0,0,0.813792356631477,0,0.402547587182052,0 | ||
|short_description=p4@VASN | |||
}} | }} |
Latest revision as of 16:18, 16 September 2015
Short description: | p4@VASN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_VASN_5end |
Coexpression cluster: | C351_Fibroblast_Smooth_mesenchymal_Adipocyte_tenocyte_Synoviocyte_Hair |
Association with transcript: | -80bp_to_BC013767_5end |
EntrezGene: | VASN |
HGNC: | 18517 |
UniProt: | Q6EMK4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.87e-18 | 76 |
multi fate stem cell | 3.54e-12 | 427 |
somatic stem cell | 8.61e-12 | 433 |
stromal cell | 9.43e-12 | 28 |
stem cell | 2.71e-11 | 441 |
connective tissue cell | 4.40e-11 | 361 |
mesenchymal cell | 2.95e-10 | 354 |
fibrocyte | 7.51e-10 | 3 |
tendon cell | 7.51e-10 | 3 |
preadipocyte | 1.03e-09 | 12 |
skin fibroblast | 3.86e-09 | 23 |
motile cell | 3.37e-08 | 386 |
GAG secreting cell | 9.62e-08 | 9 |
carbohydrate secreting cell | 9.62e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.08e-10 | 371 |
dense regular connective tissue | 7.51e-10 | 3 |
tendon | 7.51e-10 | 3 |
regular connective tissue | 7.51e-10 | 3 |