FFCP PHASE1:Hg19::chr5:96267483..96267496,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:96267483..96267496,+ | |||
|coexpression_cluster_id=C342 | |||
|description=CAGE_peak_at_chr5:96267483..96267496,+ | |description=CAGE_peak_at_chr5:96267483..96267496,+ | ||
|id=chr5:96267483..96267496,+ | |id=chr5:96267483..96267496,+ | ||
|ontology_enrichment_celltype=CL:0000945!8.17e-20!24;CL:0000826!8.17e-20!24;CL:0000738!2.07e-15!140;CL:0002031!4.22e-15!124;CL:0002032!2.59e-13!165;CL:0000837!2.59e-13!165;CL:0000037!1.65e-12!172;CL:0000566!1.65e-12!172;CL:0000988!1.81e-11!182;CL:0002087!1.52e-10!119;CL:0000838!1.61e-09!52;CL:0000542!2.72e-09!53;CL:0000051!2.72e-09!53;CL:0000453!2.96e-08!5;CL:0002274!4.61e-08!5;CL:0000457!4.61e-08!5;CL:0002191!4.61e-08!5;CL:0000097!4.61e-08!5;CL:0000831!4.61e-08!5;CL:0002028!4.61e-08!5;CL:0000990!1.28e-07!8;CL:0000557!6.99e-07!71 | |ontology_enrichment_celltype=CL:0000945!8.17e-20!24;CL:0000826!8.17e-20!24;CL:0000738!2.07e-15!140;CL:0002031!4.22e-15!124;CL:0002032!2.59e-13!165;CL:0000837!2.59e-13!165;CL:0000037!1.65e-12!172;CL:0000566!1.65e-12!172;CL:0000988!1.81e-11!182;CL:0002087!1.52e-10!119;CL:0000838!1.61e-09!52;CL:0000542!2.72e-09!53;CL:0000051!2.72e-09!53;CL:0000453!2.96e-08!5;CL:0002274!4.61e-08!5;CL:0000457!4.61e-08!5;CL:0002191!4.61e-08!5;CL:0000097!4.61e-08!5;CL:0000831!4.61e-08!5;CL:0002028!4.61e-08!5;CL:0000990!1.28e-07!8;CL:0000557!6.99e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.61e-44;24!CL:0000946;3.67e-23;1!CL:0000786;3.67e-23;1!CL:0000542;5.96e-09;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.33e-44,24;CL:0000826,1.33e-44,24;CL:0000946,3.28e-23,1;CL:0000786,3.28e-23,1;CL:0000980,3.28e-23,1;CL:0000838,1.25e-20,52;CL:0000542,3.07e-20,53;CL:0000051,3.07e-20,53;CL:0000785,2.59e-12,2;CL:0000955,2.59e-12,2;CL:0000818,2.59e-12,2;CL:0000954,2.59e-12,2;CL:0000816,2.59e-12,2;CL:0002087,3.47e-09,115;CL:0002031,8.49e-09,120;CL:0000817,1.21e-08,3;CL:0000738,9.62e-08,136 | |||
|ontology_enrichment_development_v019=UBERON:0001045;3.67e-23;1!CL:0000954;2.74e-12;2!CL:0000051;5.96e-09;53 | |||
|ontology_enrichment_disease=DOID:0060058!1.92e-10!10 | |ontology_enrichment_disease=DOID:0060058!1.92e-10!10 | ||
|ontology_enrichment_disease_v019=DOID:630;1.19e-23;1!DOID:0050177;1.19e-23;1!DOID:0050427;1.19e-23;1!DOID:0060058;6.63e-10;10 | |||
|ontology_enrichment_disease_v019_2=DOID:630,1.07e-23,1;DOID:0050177,1.07e-23,1;DOID:0050427,1.07e-23,1;DOID:0060058,6.78e-10,10 | |||
|ontology_enrichment_uberon=UBERON:0004177!4.32e-14!7;UBERON:0002106!4.91e-13!3;UBERON:0004854!4.91e-13!3;UBERON:0009034!4.91e-13!3;UBERON:0002095!4.91e-13!3;UBERON:0004782!4.91e-13!3;UBERON:0003281!4.91e-13!3;UBERON:0009664!4.91e-13!3;UBERON:0002296!4.91e-13!3;UBERON:0005602!4.91e-13!3;UBERON:0001179!4.91e-13!3;UBERON:0006293!4.91e-13!3;UBERON:0002390!1.30e-08!102;UBERON:0003061!1.30e-08!102;UBERON:0002193!1.49e-08!112;UBERON:0002405!3.18e-08!115 | |ontology_enrichment_uberon=UBERON:0004177!4.32e-14!7;UBERON:0002106!4.91e-13!3;UBERON:0004854!4.91e-13!3;UBERON:0009034!4.91e-13!3;UBERON:0002095!4.91e-13!3;UBERON:0004782!4.91e-13!3;UBERON:0003281!4.91e-13!3;UBERON:0009664!4.91e-13!3;UBERON:0002296!4.91e-13!3;UBERON:0005602!4.91e-13!3;UBERON:0001179!4.91e-13!3;UBERON:0006293!4.91e-13!3;UBERON:0002390!1.30e-08!102;UBERON:0003061!1.30e-08!102;UBERON:0002193!1.49e-08!112;UBERON:0002405!3.18e-08!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0001154;3.67e-23;1!UBERON:0001153;3.67e-23;1!UBERON:0009854;3.67e-23;1!UBERON:0002106;8.63e-09;3!UBERON:0009856;8.85e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,6.40e-23,1;UBERON:0001153,6.40e-23,1;UBERON:0001045,6.40e-23,1;UBERON:0002106,8.96e-09,3;UBERON:0004854,8.96e-09,3;UBERON:0009034,8.96e-09,3;UBERON:0002095,8.96e-09,3;UBERON:0004782,8.96e-09,3;UBERON:0003281,8.96e-09,3;UBERON:0009664,8.96e-09,3;UBERON:0002296,8.96e-09,3;UBERON:0005602,8.96e-09,3;UBERON:0001179,8.96e-09,3;UBERON:0006293,8.96e-09,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91033514369878,1.88831355734875,1.33808328233255,0,0,0,0,0,0,0.154934401160603,0.284338464974843,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0.182664153764634,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328875809207352,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0.176096868026452,0,0.288239906833923,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10513566212459,0,0,1.35393286007176,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0.525774708558629,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0.414239055347196,0,0,3.65377795142688,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0.398594520940089,0.327130788511688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,1.38280785066935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0.297046400327086,0,0,0.0939839179798536,0.128915775947154,8.59493940954389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0.202056159043763,0,0,0,0,0,0,0,0,0,0,0,8.65534929218729 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91033514369878,1.88831355734875,1.33808328233255,0,0,0,0,0,0,0.154934401160603,0.284338464974843,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0.182664153764634,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328875809207352,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0.176096868026452,0,0.288239906833923,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10513566212459,0,0,1.35393286007176,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0.525774708558629,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0.414239055347196,0,0,3.65377795142688,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0.398594520940089,0.327130788511688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,1.38280785066935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0.297046400327086,0,0,0.0939839179798536,0.128915775947154,8.59493940954389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0.202056159043763,0,0,0,0,0,0,0,0,0,0,0,8.65534929218729 | ||
|short_description=p@chr5:96267483..96267496,+ | |short_description=p@chr5:96267483..96267496,+ | ||
}} | }} |
Latest revision as of 17:33, 30 July 2015
Short description: | p@chr5:96267483..96267496, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:96267483..96267496, + |
Coexpression cluster: | C342_xeroderma_b_B_splenic_plasma_Burkitt_thymus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.33e-44 | 24 |
pro-B cell | 1.33e-44 | 24 |
antibody secreting cell | 3.28e-23 | 1 |
plasma cell | 3.28e-23 | 1 |
plasmablast | 3.28e-23 | 1 |
lymphoid lineage restricted progenitor cell | 1.25e-20 | 52 |
lymphocyte | 3.07e-20 | 53 |
common lymphoid progenitor | 3.07e-20 | 53 |
mature B cell | 2.59e-12 | 2 |
pre-B-II cell | 2.59e-12 | 2 |
transitional stage B cell | 2.59e-12 | 2 |
small pre-B-II cell | 2.59e-12 | 2 |
immature B cell | 2.59e-12 | 2 |
nongranular leukocyte | 3.47e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 8.49e-09 | 120 |
precursor B cell | 1.21e-08 | 3 |
leukocyte | 9.62e-08 | 136 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 6.40e-23 | 1 |
caecum | 6.40e-23 | 1 |
midgut | 6.40e-23 | 1 |
spleen | 8.96e-09 | 3 |
gastrointestinal system mesentery | 8.96e-09 | 3 |
stomach region | 8.96e-09 | 3 |
mesentery | 8.96e-09 | 3 |
gastrointestinal system serosa | 8.96e-09 | 3 |
mesentery of stomach | 8.96e-09 | 3 |
gut mesentery | 8.96e-09 | 3 |
dorsal mesentery | 8.96e-09 | 3 |
dorsal mesogastrium | 8.96e-09 | 3 |
peritoneal cavity | 8.96e-09 | 3 |
spleen primordium | 8.96e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 1.07e-23 | 1 |
monogenic disease | 1.07e-23 | 1 |
xeroderma pigmentosum | 1.07e-23 | 1 |
lymphoma | 6.78e-10 | 10 |