FFCP PHASE1:Hg19::chr5:92498209..92498218,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:92498209..92498218,- | |||
|coexpression_cluster_id=C4529 | |||
|description=CAGE_peak_at_chr5:92498209..92498218,- | |description=CAGE_peak_at_chr5:92498209..92498218,- | ||
|id=chr5:92498209..92498218,- | |id=chr5:92498209..92498218,- | ||
|ontology_enrichment_celltype=CL:0000708!2.55e-19!3;CL:0000064!1.47e-18!3;CL:0005012!1.47e-18!3;CL:0000067!1.47e-18!3;CL:0002304!1.47e-18!3;CL:0002617!1.64e-12!2;CL:0000342!5.19e-07!1;CL:0002565!5.19e-07!1 | |ontology_enrichment_celltype=CL:0000708!2.55e-19!3;CL:0000064!1.47e-18!3;CL:0005012!1.47e-18!3;CL:0000067!1.47e-18!3;CL:0002304!1.47e-18!3;CL:0002617!1.64e-12!2;CL:0000342!5.19e-07!1;CL:0002565!5.19e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000708;1.22e-44;3!CL:0000222;4.27e-34;1!CL:0000322;2.45e-12;3!CL:0000327;8.10e-10;15!CL:0000306;1.38e-09;4!CL:0002222;1.38e-09;4!CL:0002224;1.38e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000708,2.97e-44,3;CL:0000322,1.85e-12,3;CL:0000327,9.66e-10,15;CL:0000306,1.32e-09,4;CL:0002222,1.32e-09,4;CL:0002224,1.32e-09,4 | |||
|ontology_enrichment_development_v019=UBERON:0007123;6.33e-08;5 | |||
|ontology_enrichment_disease=DOID:3112!1.06e-07!1 | |ontology_enrichment_disease=DOID:3112!1.06e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:3112;4.27e-34;1!DOID:3910;8.34e-18;2!DOID:3908;6.33e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,2.58e-34,1;DOID:3910,5.48e-18,2;DOID:3908,5.35e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000488!7.64e-24!4;UBERON:0003210!2.55e-19!3;UBERON:0001778!1.47e-18!3;UBERON:0001775!1.47e-18!3;UBERON:0002203!5.70e-16!6;UBERON:0001768!5.70e-16!6;UBERON:0007625!1.89e-13!11;UBERON:0002200!3.36e-13!11;UBERON:0006876!3.36e-13!11;UBERON:0001801!1.61e-10!14;UBERON:0000019!1.10e-07!19;UBERON:0000047!1.10e-07!19;UBERON:0004088!1.10e-07!19;UBERON:0003072!1.10e-07!19;UBERON:0003071!1.10e-07!19;UBERON:0004128!1.10e-07!19;UBERON:0000970!2.74e-07!20;UBERON:0002506!5.19e-07!1;UBERON:0001769!5.19e-07!1;UBERON:0002104!6.27e-07!21;UBERON:0001456!6.27e-07!21;UBERON:0002336!7.40e-07!1;UBERON:0001018!7.40e-07!1;UBERON:0002473!7.40e-07!1;UBERON:0005340!7.40e-07!1;UBERON:0002316!7.40e-07!1;UBERON:0003544!7.40e-07!1;UBERON:0001020!7.40e-07!1;UBERON:0005970!7.40e-07!1;UBERON:0002437!7.40e-07!1 | |ontology_enrichment_uberon=UBERON:0000488!7.64e-24!4;UBERON:0003210!2.55e-19!3;UBERON:0001778!1.47e-18!3;UBERON:0001775!1.47e-18!3;UBERON:0002203!5.70e-16!6;UBERON:0001768!5.70e-16!6;UBERON:0007625!1.89e-13!11;UBERON:0002200!3.36e-13!11;UBERON:0006876!3.36e-13!11;UBERON:0001801!1.61e-10!14;UBERON:0000019!1.10e-07!19;UBERON:0000047!1.10e-07!19;UBERON:0004088!1.10e-07!19;UBERON:0003072!1.10e-07!19;UBERON:0003071!1.10e-07!19;UBERON:0004128!1.10e-07!19;UBERON:0000970!2.74e-07!20;UBERON:0002506!5.19e-07!1;UBERON:0001769!5.19e-07!1;UBERON:0002104!6.27e-07!21;UBERON:0001456!6.27e-07!21;UBERON:0002336!7.40e-07!1;UBERON:0001018!7.40e-07!1;UBERON:0002473!7.40e-07!1;UBERON:0005340!7.40e-07!1;UBERON:0002316!7.40e-07!1;UBERON:0003544!7.40e-07!1;UBERON:0001020!7.40e-07!1;UBERON:0005970!7.40e-07!1;UBERON:0002437!7.40e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0003210;1.22e-44;3!UBERON:0004903;8.34e-18;2!UBERON:0002173;8.34e-18;2!UBERON:0002186;8.34e-18;2!UBERON:0004821;2.45e-12;3!UBERON:0007499;2.45e-12;3!UBERON:0003215;2.45e-12;3!UBERON:0010368;2.45e-12;3!UBERON:0009911;2.45e-12;3!UBERON:0002299;2.45e-12;3!UBERON:0006524;2.45e-12;3!UBERON:0008874;2.45e-12;3!UBERON:0002169;2.45e-12;3!UBERON:0004894;2.45e-12;3!UBERON:0010077;1.38e-09;4!UBERON:0005389;1.38e-09;4!UBERON:0000484;1.38e-09;4!UBERON:0009856;1.38e-09;4!UBERON:0000965;1.38e-09;4!UBERON:0001803;1.38e-09;4!UBERON:0002046;6.33e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003210,2.97e-44,3;UBERON:0004903,5.48e-18,2;UBERON:0002173,5.48e-18,2;UBERON:0002186,5.48e-18,2;UBERON:0004821,1.85e-12,3;UBERON:0003215,1.85e-12,3;UBERON:0010368,1.85e-12,3;UBERON:0009911,1.85e-12,3;UBERON:0002299,1.85e-12,3;UBERON:0006524,1.85e-12,3;UBERON:0008874,1.85e-12,3;UBERON:0002169,1.85e-12,3;UBERON:0004894,1.85e-12,3;UBERON:0010077,1.32e-09,4;UBERON:0005389,1.32e-09,4;UBERON:0000484,1.32e-09,4;UBERON:0002546,1.32e-09,4;UBERON:0000965,1.32e-09,4;UBERON:0001803,1.32e-09,4;UBERON:0003073,1.32e-09,4;UBERON:0005426,1.32e-09,4;UBERON:0002046,5.73e-08,5;UBERON:0004117,5.73e-08,5;UBERON:0007689,5.73e-08,5;UBERON:0007123,5.73e-08,5;UBERON:0003091,5.73e-08,5 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,0.221729397462564,0.43917392846563,0,0,0,0,0,0,0,0,0,0,0,0.694281003215189,0,0,0,0,0,0.35576626268671,0,0,0,0,0.367663080345869,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0.122834317311768,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,1.44331342025273,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23344192779897,0.87192013766656,1.1734125731352,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.849523652246594,0,1.70481688083848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0.971121518136371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274083849293502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,1.26184898228651,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,0.221729397462564,0.43917392846563,0,0,0,0,0,0,0,0,0,0,0,0.694281003215189,0,0,0,0,0,0.35576626268671,0,0,0,0,0.367663080345869,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0.122834317311768,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,1.44331342025273,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23344192779897,0.87192013766656,1.1734125731352,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.849523652246594,0,1.70481688083848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0.971121518136371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274083849293502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,1.26184898228651,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr5:92498209..92498218,- | |short_description=p@chr5:92498209..92498218,- | ||
}} | }} |
Latest revision as of 17:17, 30 July 2015
Short description: | p@chr5:92498209..92498218, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:92498209..92498218, - |
Coexpression cluster: | C4529_alveolar_papillary_Meningeal_mesenchymal_Lens_Ciliary_bone |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leptomeningeal cell | 2.97e-44 | 3 |
pneumocyte | 1.85e-12 | 3 |
extracellular matrix secreting cell | 9.66e-10 | 15 |
crystallin accumulating cell | 1.32e-09 | 4 |
vertebrate lens cell | 1.32e-09 | 4 |
lens epithelial cell | 1.32e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
blood-cerebrospinal fluid barrier | 2.97e-44 | 3 |
bronchoalveolar duct junction | 5.48e-18 | 2 |
alveolar duct | 5.48e-18 | 2 |
bronchiole | 5.48e-18 | 2 |
pulmonary alveolus epithelium | 1.85e-12 | 3 |
alveolus | 1.85e-12 | 3 |
pulmonary lobule | 1.85e-12 | 3 |
lobule | 1.85e-12 | 3 |
alveolus of lung | 1.85e-12 | 3 |
alveolar system | 1.85e-12 | 3 |
pulmonary acinus | 1.85e-12 | 3 |
alveolar sac | 1.85e-12 | 3 |
alveolar wall | 1.85e-12 | 3 |
cuboidal epithelium | 1.32e-09 | 4 |
transparent eye structure | 1.32e-09 | 4 |
simple cuboidal epithelium | 1.32e-09 | 4 |
cranial placode | 1.32e-09 | 4 |
lens of camera-type eye | 1.32e-09 | 4 |
epithelium of lens | 1.32e-09 | 4 |
lens placode | 1.32e-09 | 4 |
lens vesicle | 1.32e-09 | 4 |
thyroid gland | 5.73e-08 | 5 |
pharyngeal pouch | 5.73e-08 | 5 |
thyroid diverticulum | 5.73e-08 | 5 |
pharyngeal pouch 2 | 5.73e-08 | 5 |
thyroid primordium | 5.73e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 2.58e-34 | 1 |
lung adenocarcinoma | 5.48e-18 | 2 |
non-small cell lung carcinoma | 5.35e-08 | 5 |