FFCP PHASE1:Hg19::chr16:2205755..2205819,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:2205755..2205819,+
|short_description=p1@TRAF7
|description=CAGE_peak_1_at_TRAF7_5end
|association_with_transcript=0bp_to_ENST00000326181,NM_032271,uc002c...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84231 | |EntrezGene=84231 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20456 | |HGNC=20456 | ||
|TSSclassifier=strong | |||
|UniProt=Q6Q0C0,B3KQY7 | |UniProt=Q6Q0C0,B3KQY7 | ||
|association_with_transcript=0bp_to_ENST00000326181,NM_032271,uc002cow.2_5end | |||
|cluster_id=chr16:2205755..2205819,+ | |||
|description=CAGE_peak_1_at_TRAF7_5end | |||
|id=chr16:2205755..2205819,+ | |||
|ontology_enrichment_celltype=CL:0002321!6.64e-27!248;CL:0000220!2.17e-26!246;CL:0000066!5.31e-18!254;CL:0000055!9.51e-15!180;CL:0000222!7.71e-13!119;CL:0000548!8.39e-13!679;CL:0000004!8.39e-13!679;CL:0000255!8.39e-13!679;CL:0000012!3.70e-12!682;CL:0000183!1.50e-10!59;CL:0000221!3.41e-09!71;CL:0000393!8.30e-09!60;CL:0000211!8.30e-09!60;CL:0000187!1.70e-08!54;CL:0000144!2.92e-08!625;CL:0000133!7.86e-08!59;CL:0000680!8.12e-08!57;CL:0000056!8.12e-08!57;CL:0000355!8.12e-08!57;CL:0000192!4.71e-07!42;CL:0000514!4.71e-07!42 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.20e-27,250;CL:0000066,1.15e-17,253;CL:0000222,1.90e-13,121;CL:0000221,1.78e-09,72;CL:0000393,3.77e-09,61;CL:0000211,3.77e-09,61;CL:0000187,7.64e-09,55;CL:0000680,3.78e-08,58;CL:0000056,3.78e-08,58;CL:0000355,3.78e-08,58;CL:0000133,7.86e-08,59;CL:0000192,2.12e-07,43;CL:0000514,2.12e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002100!1.73e-14!216;UBERON:0005256!3.18e-12!143;UBERON:0000486!1.18e-11!82;UBERON:0003914!5.32e-11!118;UBERON:0003104!6.24e-11!238;UBERON:0009142!6.24e-11!238;UBERON:0004290!6.13e-10!70;UBERON:0009569!1.70e-09!113;UBERON:0000475!2.10e-09!365;UBERON:0000490!2.66e-09!138;UBERON:0000466!3.62e-09!126;UBERON:0000914!7.45e-09!83;UBERON:0002329!7.45e-09!83;UBERON:0003077!7.45e-09!83;UBERON:0003059!7.45e-09!83;UBERON:0007282!7.45e-09!83;UBERON:0009618!7.45e-09!83;UBERON:0007285!7.45e-09!83;UBERON:0000119!4.89e-08!312;UBERON:0000481!4.98e-08!347;UBERON:0005177!5.62e-08!107;UBERON:0000483!7.05e-08!309;UBERON:0000464!1.18e-07!104;UBERON:0002385!1.33e-07!63;UBERON:0001015!1.33e-07!63;UBERON:0000383!1.33e-07!63;UBERON:0001134!1.49e-07!61;UBERON:0002036!1.49e-07!61;UBERON:0003082!1.49e-07!61;UBERON:0002049!1.83e-07!79;UBERON:0007798!1.83e-07!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0007196;7.36e-07;15!UBERON:0001558;7.36e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,2.62e-15,199;UBERON:0007503,1.09e-12,78;UBERON:0000486,5.25e-12,83;UBERON:0003104,5.98e-12,160;UBERON:0009142,5.98e-12,160;UBERON:0000490,9.76e-12,148;UBERON:0005256,2.37e-11,122;UBERON:0003914,1.09e-10,117;UBERON:0002329,2.77e-10,71;UBERON:0003059,2.77e-10,71;UBERON:0007282,2.77e-10,71;UBERON:0004290,2.77e-10,71;UBERON:0009618,2.77e-10,71;UBERON:0003077,9.11e-10,72;UBERON:0007285,9.11e-10,72;UBERON:0007524,1.15e-09,73;UBERON:0009569,3.04e-09,112;UBERON:0005177,5.21e-08,101;UBERON:0002385,6.39e-08,64;UBERON:0001015,6.39e-08,64;UBERON:0000383,6.39e-08,64;UBERON:0001134,7.10e-08,62;UBERON:0002036,7.10e-08,62;UBERON:0003082,7.10e-08,62;UBERON:0000119,1.03e-07,309;UBERON:0000483,1.47e-07,306;UBERON:0002049,3.52e-07,78;UBERON:0007798,3.52e-07,78;UBERON:0007196,7.68e-07,15;UBERON:0001558,7.68e-07,15 | |||
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| ||
|short_description=p1@TRAF7 | |||
}} | }} |
Latest revision as of 04:35, 25 September 2015
Short description: | p1@TRAF7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRAF7_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000326181, NM_032271, uc002cow.2_5end |
EntrezGene: | TRAF7 |
HGNC: | 20456 |
UniProt: | Q6Q0C0B3KQY7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.20e-27 | 250 |
epithelial cell | 1.15e-17 | 253 |
mesodermal cell | 1.90e-13 | 121 |
ectodermal cell | 1.78e-09 | 72 |
electrically responsive cell | 3.77e-09 | 61 |
electrically active cell | 3.77e-09 | 61 |
muscle cell | 7.64e-09 | 55 |
muscle precursor cell | 3.78e-08 | 58 |
myoblast | 3.78e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.78e-08 | 58 |
neurectodermal cell | 7.86e-08 | 59 |
smooth muscle cell | 2.12e-07 | 43 |
smooth muscle myoblast | 2.12e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
trunk | 2.62e-15 | 199 |
epithelial vesicle | 1.09e-12 | 78 |
multilaminar epithelium | 5.25e-12 | 83 |
mesenchyme | 5.98e-12 | 160 |
entire embryonic mesenchyme | 5.98e-12 | 160 |
unilaminar epithelium | 9.76e-12 | 148 |
trunk mesenchyme | 2.37e-11 | 122 |
epithelial tube | 1.09e-10 | 117 |
somite | 2.77e-10 | 71 |
presomitic mesoderm | 2.77e-10 | 71 |
presumptive segmental plate | 2.77e-10 | 71 |
dermomyotome | 2.77e-10 | 71 |
trunk paraxial mesoderm | 2.77e-10 | 71 |
paraxial mesoderm | 9.11e-10 | 72 |
presumptive paraxial mesoderm | 9.11e-10 | 72 |
dense mesenchyme tissue | 1.15e-09 | 73 |
subdivision of trunk | 3.04e-09 | 112 |
trunk region element | 5.21e-08 | 101 |
muscle tissue | 6.39e-08 | 64 |
musculature | 6.39e-08 | 64 |
musculature of body | 6.39e-08 | 64 |
skeletal muscle tissue | 7.10e-08 | 62 |
striated muscle tissue | 7.10e-08 | 62 |
myotome | 7.10e-08 | 62 |
cell layer | 1.03e-07 | 309 |
epithelium | 1.47e-07 | 306 |
vasculature | 3.52e-07 | 78 |
vascular system | 3.52e-07 | 78 |
tracheobronchial tree | 7.68e-07 | 15 |
lower respiratory tract | 7.68e-07 | 15 |