FFCP PHASE1:Hg19::chr4:77356310..77356326,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57619 | |EntrezGene=57619 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30422 | |HGNC=30422 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TF72,B3KY47 | |UniProt=Q8TF72,B3KY47 | ||
|association_with_transcript=57bp_to_ENST00000296043,NM_020859,uc011cbx.1_5end | |association_with_transcript=57bp_to_ENST00000296043,NM_020859,uc011cbx.1_5end | ||
|cluster_id=chr4:77356310..77356326,+ | |||
|coexpression_cluster_id=C2796 | |||
|description=CAGE_peak_25_at_SHROOM3_5end | |description=CAGE_peak_25_at_SHROOM3_5end | ||
|id=chr4:77356310..77356326,+ | |id=chr4:77356310..77356326,+ | ||
|ontology_enrichment_celltype=CL:0002605!3.85e-12!3;CL:0000064!1.13e-11!3;CL:0005012!1.13e-11!3;CL:0000067!1.13e-11!3;CL:0002304!1.13e-11!3;CL:0002319!2.38e-11!25;CL:0000047!6.02e-11!8;CL:0000128!1.06e-08!7;CL:0000126!1.06e-08!7;CL:0000127!1.06e-08!7;CL:0002453!1.06e-08!7;CL:0000133!3.24e-08!59 | |ontology_enrichment_celltype=CL:0002605!3.85e-12!3;CL:0000064!1.13e-11!3;CL:0005012!1.13e-11!3;CL:0000067!1.13e-11!3;CL:0002304!1.13e-11!3;CL:0002319!2.38e-11!25;CL:0000047!6.02e-11!8;CL:0000128!1.06e-08!7;CL:0000126!1.06e-08!7;CL:0000127!1.06e-08!7;CL:0002453!1.06e-08!7;CL:0000133!3.24e-08!59 | ||
|ontology_enrichment_celltype_v019=CL:0002605;1.54e-43;3!CL:0000047;2.95e-29;2!CL:0000128;4.23e-19;7!CL:0000126;4.23e-19;7!CL:0000127;4.23e-19;7!CL:0002319;3.00e-13;25!CL:0002149;2.52e-10;6!CL:0002255;2.52e-10;6!CL:0002253;2.40e-08;2!CL:0000243;3.25e-08;15!CL:0000125;3.25e-08;15!CL:0000095;2.10e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.24e-43,3;CL:0000128,3.86e-19,7;CL:0000126,3.86e-19,7;CL:0000127,3.86e-19,7;CL:0002453,3.86e-19,7;CL:0002319,2.89e-13,25;CL:0002149,2.77e-10,6;CL:0002255,2.77e-10,6;CL:0002253,2.67e-08,2;CL:0000243,3.13e-08,15;CL:0000125,3.13e-08,15;CL:0000030,3.13e-08,15;CL:0000339,3.13e-08,15;CL:0000133,3.58e-08,59;CL:0000047,4.83e-08,8;CL:0000095,2.04e-07,17;CL:0000123,2.04e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000339;3.25e-08;15!CL:0000133;4.66e-07;59 | |||
|ontology_enrichment_disease=DOID:3493!2.45e-08!2 | |ontology_enrichment_disease=DOID:3493!2.45e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:6193;2.21e-15;1!DOID:3001;2.52e-10;6!DOID:299;2.44e-09;25!DOID:3493;1.50e-08;2!DOID:3350;2.40e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,3.66e-15,1;DOID:3001,2.77e-10,6;DOID:299,2.64e-09,25;DOID:3493,1.50e-08,2;DOID:3350,3.08e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0003056!4.07e-17!61;UBERON:0003075!1.85e-16!86;UBERON:0007284!1.85e-16!86;UBERON:0002346!1.80e-15!90;UBERON:0007625!5.00e-15!11;UBERON:0000488!1.33e-14!4;UBERON:0005743!1.36e-14!86;UBERON:0001017!5.58e-14!82;UBERON:0000033!5.67e-13!123;UBERON:0000073!1.03e-12!94;UBERON:0001016!1.03e-12!94;UBERON:0001869!3.58e-12!32;UBERON:0000153!4.45e-12!129;UBERON:0007811!4.45e-12!129;UBERON:0001778!1.13e-11!3;UBERON:0001775!1.13e-11!3;UBERON:0004121!2.09e-11!169;UBERON:0002020!2.35e-11!34;UBERON:0003528!2.35e-11!34;UBERON:0000956!2.41e-11!25;UBERON:0000203!2.41e-11!25;UBERON:0001893!2.50e-11!34;UBERON:0000924!5.58e-11!173;UBERON:0006601!5.58e-11!173;UBERON:0001049!5.63e-11!57;UBERON:0005068!5.63e-11!57;UBERON:0006241!5.63e-11!57;UBERON:0007135!5.63e-11!57;UBERON:0002780!1.09e-10!41;UBERON:0001890!1.09e-10!41;UBERON:0006240!1.09e-10!41;UBERON:0002616!1.73e-10!59;UBERON:0003080!2.24e-10!42;UBERON:0002791!7.01e-10!33;UBERON:0002203!9.67e-10!6;UBERON:0001768!9.67e-10!6;UBERON:0000955!1.46e-09!69;UBERON:0006238!1.46e-09!69;UBERON:0001801!1.37e-08!14;UBERON:0000019!3.02e-08!19;UBERON:0000047!3.02e-08!19;UBERON:0004088!3.02e-08!19;UBERON:0003072!3.02e-08!19;UBERON:0003071!3.02e-08!19;UBERON:0004128!3.02e-08!19;UBERON:0000970!8.83e-08!20;UBERON:0002104!2.33e-07!21;UBERON:0001456!2.33e-07!21;UBERON:0001950!7.90e-07!20 | |ontology_enrichment_uberon=UBERON:0003056!4.07e-17!61;UBERON:0003075!1.85e-16!86;UBERON:0007284!1.85e-16!86;UBERON:0002346!1.80e-15!90;UBERON:0007625!5.00e-15!11;UBERON:0000488!1.33e-14!4;UBERON:0005743!1.36e-14!86;UBERON:0001017!5.58e-14!82;UBERON:0000033!5.67e-13!123;UBERON:0000073!1.03e-12!94;UBERON:0001016!1.03e-12!94;UBERON:0001869!3.58e-12!32;UBERON:0000153!4.45e-12!129;UBERON:0007811!4.45e-12!129;UBERON:0001778!1.13e-11!3;UBERON:0001775!1.13e-11!3;UBERON:0004121!2.09e-11!169;UBERON:0002020!2.35e-11!34;UBERON:0003528!2.35e-11!34;UBERON:0000956!2.41e-11!25;UBERON:0000203!2.41e-11!25;UBERON:0001893!2.50e-11!34;UBERON:0000924!5.58e-11!173;UBERON:0006601!5.58e-11!173;UBERON:0001049!5.63e-11!57;UBERON:0005068!5.63e-11!57;UBERON:0006241!5.63e-11!57;UBERON:0007135!5.63e-11!57;UBERON:0002780!1.09e-10!41;UBERON:0001890!1.09e-10!41;UBERON:0006240!1.09e-10!41;UBERON:0002616!1.73e-10!59;UBERON:0003080!2.24e-10!42;UBERON:0002791!7.01e-10!33;UBERON:0002203!9.67e-10!6;UBERON:0001768!9.67e-10!6;UBERON:0000955!1.46e-09!69;UBERON:0006238!1.46e-09!69;UBERON:0001801!1.37e-08!14;UBERON:0000019!3.02e-08!19;UBERON:0000047!3.02e-08!19;UBERON:0004088!3.02e-08!19;UBERON:0003072!3.02e-08!19;UBERON:0003071!3.02e-08!19;UBERON:0004128!3.02e-08!19;UBERON:0000970!8.83e-08!20;UBERON:0002104!2.33e-07!21;UBERON:0001456!2.33e-07!21;UBERON:0001950!7.90e-07!20 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p25@SHROOM3 | |short_description=p25@SHROOM3 | ||
}} | }} |
Latest revision as of 17:52, 18 September 2015
Short description: | p25@SHROOM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_25_at_SHROOM3_5end |
Coexpression cluster: | C2796_Astrocyte_signet_Ciliary_small_Neural_anaplastic_Lens |
Association with transcript: | 57bp_to_ENST00000296043, NM_020859, uc011cbx.1_5end |
EntrezGene: | SHROOM3 |
HGNC: | 30422 |
UniProt: | Q8TF72B3KY47 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.24e-43 | 3 |
oligodendrocyte | 3.86e-19 | 7 |
macroglial cell | 3.86e-19 | 7 |
astrocyte | 3.86e-19 | 7 |
oligodendrocyte precursor cell | 3.86e-19 | 7 |
neural cell | 2.89e-13 | 25 |
epithelial cell of uterus | 2.77e-10 | 6 |
stromal cell of endometrium | 2.77e-10 | 6 |
epithelial cell of large intestine | 2.67e-08 | 2 |
glial cell (sensu Vertebrata) | 3.13e-08 | 15 |
glial cell | 3.13e-08 | 15 |
glioblast | 3.13e-08 | 15 |
glioblast (sensu Vertebrata) | 3.13e-08 | 15 |
neurectodermal cell | 3.58e-08 | 59 |
neuronal stem cell | 4.83e-08 | 8 |
neuron associated cell | 2.04e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 2.04e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 3.66e-15 | 1 |
female reproductive endometrioid cancer | 2.77e-10 | 6 |
adenocarcinoma | 2.64e-09 | 25 |
signet ring cell adenocarcinoma | 1.50e-08 | 2 |
mesenchymal cell neoplasm | 3.08e-08 | 2 |