FFCP PHASE1:Hg19::chr9:134585221..134585254,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2889 | |EntrezGene=2889 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4568 | |HGNC=4568 | ||
|TSSclassifier=strong | |||
|UniProt=F5H4P5,E9PDT1,F5H704,C9JL20,Q5JUE5,E7ETL5,Q13905 | |UniProt=F5H4P5,E9PDT1,F5H704,C9JL20,Q5JUE5,E7ETL5,Q13905 | ||
|association_with_transcript=0bp_to_ENST00000337036,ENST00000372190,ENST00000372191,ENST00000398415,ENST00000411834,ENST00000427994,ENST00000437236,NM_198679,uc004cbb.2_5end | |association_with_transcript=0bp_to_ENST00000337036,ENST00000372190,ENST00000372191,ENST00000398415,ENST00000411834,ENST00000427994,ENST00000437236,NM_198679,uc004cbb.2_5end | ||
|cluster_id=chr9:134585221..134585254,- | |||
|coexpression_cluster_id=C20 | |||
|description=CAGE_peak_3_at_RAPGEF1_5end | |description=CAGE_peak_3_at_RAPGEF1_5end | ||
|id=chr9:134585221..134585254,- | |id=chr9:134585221..134585254,- | ||
|ontology_enrichment_celltype=CL:0002057!6.37e-11!42;CL:0000860!1.24e-09!45;CL:0002139!2.39e-07!24;CL:0002194!7.69e-07!63;CL:0000576!7.69e-07!63;CL:0000040!7.69e-07!63;CL:0000559!7.69e-07!63 | |ontology_enrichment_celltype=CL:0002057!6.37e-11!42;CL:0000860!1.24e-09!45;CL:0002139!2.39e-07!24;CL:0002194!7.69e-07!63;CL:0000576!7.69e-07!63;CL:0000040!7.69e-07!63;CL:0000559!7.69e-07!63 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.02e-56!115;UBERON:0001049!1.08e-20!57;UBERON:0005068!1.08e-20!57;UBERON:0006241!1.08e-20!57;UBERON:0007135!1.08e-20!57;UBERON:0003080!2.34e-17!42;UBERON:0002616!5.23e-17!59;UBERON:0002780!1.75e-16!41;UBERON:0001890!1.75e-16!41;UBERON:0006240!1.75e-16!41;UBERON:0002020!1.86e-16!34;UBERON:0003528!1.86e-16!34;UBERON:0001893!3.51e-16!34;UBERON:0003075!3.60e-16!86;UBERON:0007284!3.60e-16!86;UBERON:0002791!1.61e-15!33;UBERON:0001869!3.36e-15!32;UBERON:0002346!9.61e-15!90;UBERON:0000955!8.61e-14!69;UBERON:0006238!8.61e-14!69;UBERON:0005743!2.59e-13!86;UBERON:0001017!6.06e-13!82;UBERON:0002619!3.28e-12!22;UBERON:0000073!4.52e-12!94;UBERON:0001016!4.52e-12!94;UBERON:0004111!8.43e-11!241;UBERON:0001950!1.05e-10!20;UBERON:0003056!1.99e-10!61;UBERON:0000956!4.39e-10!25;UBERON:0000203!4.39e-10!25;UBERON:0000025!1.99e-09!194;UBERON:0000477!6.85e-09!286;UBERON:0000153!8.00e-09!129;UBERON:0007811!8.00e-09!129;UBERON:0002420!1.66e-08!9;UBERON:0007245!1.66e-08!9;UBERON:0010009!1.66e-08!9;UBERON:0010011!1.66e-08!9;UBERON:0000454!1.66e-08!9;UBERON:0002308!1.81e-08!9;UBERON:0000125!1.81e-08!9;UBERON:0000468!2.70e-08!659;UBERON:0000062!3.16e-08!511;UBERON:0000033!1.22e-07!123;UBERON:0002298!2.68e-07!8;UBERON:0001871!2.89e-07!7;UBERON:0000467!6.01e-07!625;UBERON:0000480!7.22e-07!626;UBERON:0009663!8.67e-07!7 | |ontology_enrichment_uberon=UBERON:0007023!3.02e-56!115;UBERON:0001049!1.08e-20!57;UBERON:0005068!1.08e-20!57;UBERON:0006241!1.08e-20!57;UBERON:0007135!1.08e-20!57;UBERON:0003080!2.34e-17!42;UBERON:0002616!5.23e-17!59;UBERON:0002780!1.75e-16!41;UBERON:0001890!1.75e-16!41;UBERON:0006240!1.75e-16!41;UBERON:0002020!1.86e-16!34;UBERON:0003528!1.86e-16!34;UBERON:0001893!3.51e-16!34;UBERON:0003075!3.60e-16!86;UBERON:0007284!3.60e-16!86;UBERON:0002791!1.61e-15!33;UBERON:0001869!3.36e-15!32;UBERON:0002346!9.61e-15!90;UBERON:0000955!8.61e-14!69;UBERON:0006238!8.61e-14!69;UBERON:0005743!2.59e-13!86;UBERON:0001017!6.06e-13!82;UBERON:0002619!3.28e-12!22;UBERON:0000073!4.52e-12!94;UBERON:0001016!4.52e-12!94;UBERON:0004111!8.43e-11!241;UBERON:0001950!1.05e-10!20;UBERON:0003056!1.99e-10!61;UBERON:0000956!4.39e-10!25;UBERON:0000203!4.39e-10!25;UBERON:0000025!1.99e-09!194;UBERON:0000477!6.85e-09!286;UBERON:0000153!8.00e-09!129;UBERON:0007811!8.00e-09!129;UBERON:0002420!1.66e-08!9;UBERON:0007245!1.66e-08!9;UBERON:0010009!1.66e-08!9;UBERON:0010011!1.66e-08!9;UBERON:0000454!1.66e-08!9;UBERON:0002308!1.81e-08!9;UBERON:0000125!1.81e-08!9;UBERON:0000468!2.70e-08!659;UBERON:0000062!3.16e-08!511;UBERON:0000033!1.22e-07!123;UBERON:0002298!2.68e-07!8;UBERON:0001871!2.89e-07!7;UBERON:0000467!6.01e-07!625;UBERON:0000480!7.22e-07!626;UBERON:0009663!8.67e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0003978;1.58e-08;3!UBERON:0000946;1.58e-08;3!UBERON:0004151;2.28e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.68e-26,114;UBERON:0003978,1.61e-08,3;UBERON:0009751,1.61e-08,3;UBERON:0000946,1.61e-08,3;UBERON:0002523,1.61e-08,3;UBERON:0005983,1.61e-08,3;UBERON:0002165,1.61e-08,3;UBERON:0002062,1.61e-08,3;UBERON:0007280,1.61e-08,3;UBERON:0004151,2.30e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.0821005894499457,0,0,0.767658796194425,0.309632246632152,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0.436194716338694,0.377875943688809,0.242584061187816,1.62700325833979,2.46700732813095,1.85823822537062,0.28769239232215,1.0246428261164,0.236482229888585,0.344745680736619,0.645484683583826,1.35426486594342,1.12945403725563,1.09162460023138,0.674170453335254,0.918251677112708,2.56743221660875,0,0,0.199463657621632,0.426224750532694,0.870627715885752,0,0,0.251248665256743,0,0,0.605399502633369,1.84138817993782,0,0,0.212604299965044,0.209658645508376,0.112328631146495,0,0,0.285012743741249,0.99458338599545,0.547992461293902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786021525498329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,2.0956652079634,0,0,0,0,0,0,0,0,1.19257444420023,0,1.04142150482278,0.56530794192401,1.25849830862972,0.825354125820202,0.835979866147242,2.58416759169329,3.5576626268671,1.33888245105868,0,0,0,0.367663080345869,0,0.803697554556718,2.2452937262617,2.47745257063309,1.53316637465883,0,0.916008719652036,0,0,0,0,0,0,0,0,0,0,0,0,0.404132016209064,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.69077727312324,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0.433099343283221,0,0,0,0,0,1.40402559083543,0.297262324577456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0.65147236858747,0,0,0,0,0,1.2162378064119,0.502257091432126,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,1.02056223165909,0.647747748306418,0,0,0,0,0,0,0,0,0.256450125116389,0,0,1.64865618636356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,4.9812780952444,0,0,0,0,0,0,2.98244294329889,0.984685914873589,0,0,0,1.79323189425963,1.38141957765574,0,0,0,0,0,0,0.511572370226872,1.1837208676432,0,0,0,0.371072392647405,0,0,0,2.89999830173917,0,0,0,0,0,0,1.77148277162768,0.964771509003264,0,0.331737779793674,0.295547618953547,0.658156191461918,0,0,1.38510465306835,0,6.68635322725374,2.2439411102443,1.08647371922008,0.31900115973192,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.530745387020035,2.4441205797345,0,0,0,0.808813595768125,11.236087062183,0.468528891450678,0,0,0,0.394584402849391,3.62972148145992,0.30607276163049,3.03295582216742,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0.51595809741485,0,0,0,2.03676934625681,0,1.58186518546373,0.137041924646751,0,0.50648636764703,0,0,0.85381197895741,0.19980960958213,0,0,0,0,0,0,0.135904206073614,0,0,0,3.00210144354895,0.958337652243951,0,0,0.525774708558629,15.0812496687017,13.5204650166893,10.7680953686522,5.99037001496973,14.5936856366434,8.70368684023303,15.3178317269736,0,0,0,0,0,0,0,2.38568906942791,0.817220436669454,0,0,0,0,0,0.425246896606173,0,0.709251365692784,1.73100140845494,0,0,0,5.71756261098694,9.26928758511604,0,0,0,0,0,0,0,0,0.58620893471233,1.32506888912221,2.71494208359256,0.92562821219883,0,0,1.81538601365081,2.04365596629566,0.828478110694391,0.992332043623902,0,0,0,3.80812462358632,4.5124180924086,1.22538230705385,0.983617892129413,0,3.54427271986794,1.46431517882356,0.625954653532499,2.29363678276028,0.554645257684261,1.4903136705932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300515217994437,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0.389720617678777,0.132864840313363,0,0,0,0,0.39997479170986,0,0.516644938982447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.706521476061055,0,0.957803154342908,0.205116364240755,0,0.345786262321089,0.645902582527404,1.42769420259154,0.0981477185010256,0,0,0,0,0,0,0.150420656698515,0,0.781514011233092,0,0,0,0.87798860003913,2.34323429584154,0.413373593002368,1.14148458349032,0,3.28954660114309,4.46590060550365,0,0,0,0.672567444437648,0,0,2.83847584520444,0,0,0.40781839786099,0.657727735628491,0,0,0.863424021355654,3.29942738823604,0,0,0,0,3.50235066465616,0,0,0,0,0,0.17071847709395,0,0,0.118332000730565,0,0.846774100381858,0,0,0,0,0,0,3.23714418593947,1.84793052341245,0,1.94284397223656,0,0,0,0,0,0,0.463044948647668,0.218559560503957,0,1.22574160876953,0,1.37415926980462,0,1.2679671827502,0,0.845855261818682,0.515663103788617,0.0999411559249289,0,0,0,1.46067277649303,0.917458566809082,0.143339583151451,0,0.747906392100062,0,1.0580536810308,0,0,0,0,0,0,0,0.534434810531121,0,0,0.606229585745915,0,1.65833887891756,0.413731983447581,4.05144565611864,2.85677317756488,0.387533459016037,0.806971285846153,0,1.2092960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| ||
|short_description=p3@RAPGEF1 | |short_description=p3@RAPGEF1 | ||
}} | }} |
Latest revision as of 03:34, 16 September 2015
Short description: | p3@RAPGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RAPGEF1_5end |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | 0bp_to_ENST00000337036, ENST00000372190, ENST00000372191, ENST00000398415, ENST00000411834, ENST00000427994, ENST00000437236, NM_198679, uc004cbb.2_5end |
EntrezGene: | RAPGEF1 |
HGNC: | 4568 |
UniProt: | F5H4P5E9PDT1F5H704C9JL20Q5JUE5E7ETL5Q13905 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 5.68e-26 | 114 |
valve | 1.61e-08 | 3 |
cardiac mesenchyme | 1.61e-08 | 3 |
cardial valve | 1.61e-08 | 3 |
tunica intima | 1.61e-08 | 3 |
heart layer | 1.61e-08 | 3 |
endocardium | 1.61e-08 | 3 |
endocardial cushion | 1.61e-08 | 3 |
presumptive endocardium | 1.61e-08 | 3 |
cardiac chamber | 2.30e-08 | 3 |