FFCP PHASE1:Hg19::chr9:130914227..130914253,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr9:130914227..130914253,- | |||
|coexpression_cluster_id=C484 | |||
|description=CAGE_peak_at_chr9:130914227..130914253,- | |description=CAGE_peak_at_chr9:130914227..130914253,- | ||
|id=chr9:130914227..130914253,- | |id=chr9:130914227..130914253,- | ||
|ontology_enrichment_celltype=CL:0000066!1.72e-19!254;CL:0000223!1.11e-11!59;CL:0002076!2.49e-10!43;CL:1000415!3.09e-07!2 | |ontology_enrichment_celltype=CL:0000066!1.72e-19!254;CL:0000223!1.11e-11!59;CL:0002076!2.49e-10!43;CL:1000415!3.09e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002178;4.44e-15;3!CL:1001319;4.53e-12;1!CL:1000600;4.53e-12;1!CL:0000244;3.24e-11;4!CL:0000731;3.24e-11;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,3.99e-15,3;CL:1001319,4.53e-12,1;CL:1000600,4.53e-12,1;CL:0000244,3.24e-11,4;CL:0000731,3.24e-11,4;CL:0000066,1.26e-09,253;CL:0002076,9.19e-09,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!5.05e-26!106;DOID:0050687!8.08e-17!143;DOID:1749!3.04e-15!14;DOID:299!2.08e-14!25;DOID:162!4.99e-08!235;DOID:14566!1.11e-07!239;DOID:4929!4.43e-07!2;DOID:3493!4.84e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:3111;7.35e-12;1!DOID:3603;7.35e-12;1!DOID:299;1.88e-10;25!DOID:3119;2.71e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,6.97e-12,1;DOID:3603,6.97e-12,1;DOID:305,1.70e-10,106;DOID:299,1.90e-10,25;DOID:0050687,2.33e-07,143;DOID:3119,2.80e-07,14 | |||
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|ontology_enrichment_uberon_v019=UBERON:0000365;2.63e-19;5!UBERON:0005910;3.38e-16;6!UBERON:0002294;5.31e-14;7!UBERON:0001173;5.31e-14;7!UBERON:0004645;4.53e-12;1!UBERON:0001256;4.53e-12;1!UBERON:0001259;4.53e-12;1!UBERON:0004913;1.32e-11;1!UBERON:0003703;1.32e-11;1!UBERON:0001174;1.32e-11;1!UBERON:0004914;1.32e-11;1!UBERON:0002394;1.77e-11;4!UBERON:0003928;1.77e-11;4!UBERON:0000945;2.04e-09;5!UBERON:0010039;2.04e-09;5!UBERON:0000486;2.23e-08;12!UBERON:0006562;9.43e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,2.63e-19,5;UBERON:0005910,3.38e-16,6;UBERON:0004645,4.53e-12,1;UBERON:0001256,4.53e-12,1;UBERON:0001259,4.53e-12,1;UBERON:0004913,1.81e-11,1;UBERON:0003703,1.81e-11,1;UBERON:0001174,1.81e-11,1;UBERON:0004914,1.81e-11,1;UBERON:0002294,5.38e-11,9;UBERON:0001173,5.38e-11,9;UBERON:0004912,5.38e-11,9;UBERON:0002394,6.84e-08,6;UBERON:0003928,6.84e-08,6;UBERON:0004119,1.28e-07,160;UBERON:0000925,1.28e-07,160;UBERON:0006595,1.28e-07,160;UBERON:0005911,3.16e-07,82 | |||
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| ||
|short_description=p@chr9:130914227..130914253,- | |short_description=p@chr9:130914227..130914253,- | ||
}} | }} |
Latest revision as of 23:08, 31 July 2015
Short description: | p@chr9:130914227..130914253, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:130914227..130914253, - |
Coexpression cluster: | C484_squamous_pharyngeal_bile_transitionalcell_Prostate_signet_trachea |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 3.99e-15 | 3 |
bladder cell | 4.53e-12 | 1 |
lower urinary tract cell | 4.53e-12 | 1 |
transitional epithelial cell | 3.24e-11 | 4 |
urothelial cell | 3.24e-11 | 4 |
epithelial cell | 1.26e-09 | 253 |
endo-epithelial cell | 9.19e-09 | 42 |
Ontology term | p-value | n |
---|---|---|
urothelium | 2.63e-19 | 5 |
transitional epithelium | 3.38e-16 | 6 |
urinary bladder urothelium | 4.53e-12 | 1 |
wall of urinary bladder | 4.53e-12 | 1 |
mucosa of urinary bladder | 4.53e-12 | 1 |
hepatopancreatic ampulla | 1.81e-11 | 1 |
extrahepatic bile duct | 1.81e-11 | 1 |
common bile duct | 1.81e-11 | 1 |
duodenal papilla | 1.81e-11 | 1 |
biliary system | 5.38e-11 | 9 |
biliary tree | 5.38e-11 | 9 |
biliary bud | 5.38e-11 | 9 |
bile duct | 6.84e-08 | 6 |
digestive system duct | 6.84e-08 | 6 |
endoderm-derived structure | 1.28e-07 | 160 |
endoderm | 1.28e-07 | 160 |
presumptive endoderm | 1.28e-07 | 160 |
endo-epithelium | 3.16e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 6.97e-12 | 1 |
mucinous cystadenocarcinoma | 6.97e-12 | 1 |
carcinoma | 1.70e-10 | 106 |
adenocarcinoma | 1.90e-10 | 25 |
cell type cancer | 2.33e-07 | 143 |
gastrointestinal system cancer | 2.80e-07 | 14 |