FFCP PHASE1:Hg19::chr9:118431048..118431059,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr9:118431048..118431059,+ | |||
|description=CAGE_peak_at_chr9:118431048..118431059,+ | |description=CAGE_peak_at_chr9:118431048..118431059,+ | ||
|id=chr9:118431048..118431059,+ | |id=chr9:118431048..118431059,+ | ||
|ontology_enrichment_celltype=CL:0000359!2.30e-17!32;CL:0000192!1.10e-15!42;CL:0000514!1.10e-15!42;CL:0000055!1.13e-15!180;CL:0000680!1.95e-14!57;CL:0000056!1.95e-14!57;CL:0000355!1.95e-14!57;CL:0000187!6.16e-14!54;CL:0000183!2.69e-12!59;CL:0000393!5.30e-12!60;CL:0000211!5.30e-12!60;CL:0002594!1.04e-10!4;CL:0002494!8.43e-09!16;CL:0000144!1.87e-08!625;CL:0002580!2.07e-08!3;CL:0000723!3.19e-08!436;CL:0002620!3.29e-08!23;CL:0000048!5.28e-08!430;CL:0000057!7.36e-08!75;CL:0000034!8.35e-08!444;CL:0000222!1.52e-07!119;CL:0000548!2.02e-07!679;CL:0000004!2.02e-07!679;CL:0000255!2.02e-07!679;CL:0000012!2.64e-07!682 | |ontology_enrichment_celltype=CL:0000359!2.30e-17!32;CL:0000192!1.10e-15!42;CL:0000514!1.10e-15!42;CL:0000055!1.13e-15!180;CL:0000680!1.95e-14!57;CL:0000056!1.95e-14!57;CL:0000355!1.95e-14!57;CL:0000187!6.16e-14!54;CL:0000183!2.69e-12!59;CL:0000393!5.30e-12!60;CL:0000211!5.30e-12!60;CL:0002594!1.04e-10!4;CL:0002494!8.43e-09!16;CL:0000144!1.87e-08!625;CL:0002580!2.07e-08!3;CL:0000723!3.19e-08!436;CL:0002620!3.29e-08!23;CL:0000048!5.28e-08!430;CL:0000057!7.36e-08!75;CL:0000034!8.35e-08!444;CL:0000222!1.52e-07!119;CL:0000548!2.02e-07!679;CL:0000004!2.02e-07!679;CL:0000255!2.02e-07!679;CL:0000012!2.64e-07!682 | ||
|ontology_enrichment_celltype_v019=CL:0002589;2.05e-15;2!CL:0002596;2.05e-15;2!CL:0002580;9.90e-11;3!CL:0000307;9.90e-11;3!CL:1000306;1.82e-08;4!CL:0002547;1.82e-08;4!CL:0000359;1.86e-08;32!CL:0002595;6.04e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002596,1.54e-15,2;CL:0002589,2.05e-15,2;CL:0002580,8.99e-11,3;CL:0000068,1.20e-10,3;CL:0000069,1.20e-10,3;CL:0000307,1.20e-10,3;CL:0000377,1.20e-10,3;CL:0000359,1.18e-08,32;CL:1000306,1.82e-08,4;CL:0002547,1.82e-08,4;CL:0002595,6.39e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000377;9.90e-11;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001637!8.36e-18!42;UBERON:0003509!8.36e-18!42;UBERON:0004572!8.36e-18!42;UBERON:0004872!7.33e-14!84;UBERON:0001134!4.11e-13!61;UBERON:0002036!4.11e-13!61;UBERON:0003082!4.11e-13!61;UBERON:0004573!1.03e-12!33;UBERON:0004571!1.03e-12!33;UBERON:0002385!1.62e-12!63;UBERON:0001015!1.62e-12!63;UBERON:0000383!1.62e-12!63;UBERON:0001981!2.87e-12!60;UBERON:0007500!2.87e-12!60;UBERON:0004537!2.87e-12!60;UBERON:0006965!2.87e-12!60;UBERON:0004290!7.33e-12!70;UBERON:0001310!1.04e-10!4;UBERON:0000055!5.64e-10!69;UBERON:0004535!7.83e-10!110;UBERON:0003914!1.60e-09!118;UBERON:0001009!2.18e-09!113;UBERON:0000486!2.73e-09!82;UBERON:0000914!4.11e-09!83;UBERON:0002329!4.11e-09!83;UBERON:0003077!4.11e-09!83;UBERON:0003059!4.11e-09!83;UBERON:0007282!4.11e-09!83;UBERON:0009618!4.11e-09!83;UBERON:0007285!4.11e-09!83;UBERON:0002049!5.08e-09!79;UBERON:0007798!5.08e-09!79;UBERON:0002118!1.92e-08!5;UBERON:0004532!1.92e-08!5 | |ontology_enrichment_uberon=UBERON:0001637!8.36e-18!42;UBERON:0003509!8.36e-18!42;UBERON:0004572!8.36e-18!42;UBERON:0004872!7.33e-14!84;UBERON:0001134!4.11e-13!61;UBERON:0002036!4.11e-13!61;UBERON:0003082!4.11e-13!61;UBERON:0004573!1.03e-12!33;UBERON:0004571!1.03e-12!33;UBERON:0002385!1.62e-12!63;UBERON:0001015!1.62e-12!63;UBERON:0000383!1.62e-12!63;UBERON:0001981!2.87e-12!60;UBERON:0007500!2.87e-12!60;UBERON:0004537!2.87e-12!60;UBERON:0006965!2.87e-12!60;UBERON:0004290!7.33e-12!70;UBERON:0001310!1.04e-10!4;UBERON:0000055!5.64e-10!69;UBERON:0004535!7.83e-10!110;UBERON:0003914!1.60e-09!118;UBERON:0001009!2.18e-09!113;UBERON:0000486!2.73e-09!82;UBERON:0000914!4.11e-09!83;UBERON:0002329!4.11e-09!83;UBERON:0003077!4.11e-09!83;UBERON:0003059!4.11e-09!83;UBERON:0007282!4.11e-09!83;UBERON:0009618!4.11e-09!83;UBERON:0007285!4.11e-09!83;UBERON:0002049!5.08e-09!79;UBERON:0007798!5.08e-09!79;UBERON:0002118!1.92e-08!5;UBERON:0004532!1.92e-08!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0001529;2.05e-15;2!UBERON:0005396;2.05e-15;2!UBERON:0007204;2.05e-15;2!UBERON:0004573;5.03e-13;33!UBERON:0004571;5.03e-13;33!UBERON:0001637;1.71e-09;42!UBERON:0003509;1.71e-09;42!UBERON:0004572;1.71e-09;42!UBERON:0004797;1.82e-08;4!UBERON:0000415;1.82e-08;4!UBERON:0007240;1.82e-08;4!UBERON:0005742;1.82e-08;4!UBERON:0005734;1.82e-08;4!UBERON:0004664;1.82e-08;4!UBERON:0004663;1.82e-08;4!UBERON:0003834;6.04e-07;5!UBERON:0001533;6.04e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005396,1.54e-15,2;UBERON:0001529,2.05e-15,2;UBERON:0007204,2.05e-15,2;UBERON:0004573,3.18e-14,33;UBERON:0004571,3.18e-14,33;UBERON:0001637,2.75e-11,42;UBERON:0003509,2.75e-11,42;UBERON:0004572,2.75e-11,42;UBERON:0004872,7.02e-09,83;UBERON:0000415,1.82e-08,4;UBERON:0007240,1.82e-08,4;UBERON:0005742,1.82e-08,4;UBERON:0005734,1.82e-08,4;UBERON:0004664,1.82e-08,4;UBERON:0004663,1.82e-08,4;UBERON:0007500,3.63e-08,59;UBERON:0001981,3.63e-08,59;UBERON:0004537,3.63e-08,59;UBERON:0006965,3.63e-08,59;UBERON:0000055,3.87e-07,68;UBERON:0003834,6.39e-07,5;UBERON:0001533,6.39e-07,5;UBERON:0004535,8.11e-07,109 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730310090387373,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.17782033951725,0.573673241497627,0,0,5.33744978648525,0.49333509683432,0,0.269421344139376,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.358779271377724,0,0.211931901159562,0,0.103052529238439,0.515281080091258,0,0,0.0974370051611986,0.252433774244115,0.276149695926898,0.161646056818812,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.219500570817251,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,0,0.289562613335158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0.368738337083406,0.0868836144680828,0,0,0,0,0,0,0,0,0.248107807818777,1.2276957863045,0.280660094433074,0,0,0,0,0,0.177561725313127,0,0,0,0,0.200506470303285,0,0.114814448164607,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290012154876366,0,0,0,0,0,0,0.0890320356467374,0,0,0,0.10115778085555,0,0.62962469366128,0,0.616067160352178,0,0,1.11194531462352,0.572499546967965,0,0,0,0,0,0.636406495851874,1.56989728039846,0,0.54907405947211,0.117812402345686,0.202182481573316,0,0.421258456238981,0,0,0,0,0,0,1.10273068709225,0,0.438450885253763,0,0,0.811641507850816,0.30982349809975,0.281695602532241,0,0,0.35667105148125,0,0,0,0,0,0.384888450902048,0,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.701139929541673,0.554805861502613,0.189403005275089,0.251567901752575,0,0.686520205190771,0,0.15543720058278,0.147855149989634,0,0,0.155262956876259,0,0,0,0,0,0.406870733204662,0.545545977607678,0.107410557042488,0.928067519756987,0,0,0,0.336749488765919,0,0,0,0.260994291965212,0.226705925512272,0.231522474323834,0.244736704506468,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730310090387373,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.17782033951725,0.573673241497627,0,0,5.33744978648525,0.49333509683432,0,0.269421344139376,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.358779271377724,0,0.211931901159562,0,0.103052529238439,0.515281080091258,0,0,0.0974370051611986,0.252433774244115,0.276149695926898,0.161646056818812,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.219500570817251,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,0,0.289562613335158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0.368738337083406,0.0868836144680828,0,0,0,0,0,0,0,0,0.248107807818777,1.2276957863045,0.280660094433074,0,0,0,0,0,0.177561725313127,0,0,0,0,0.200506470303285,0,0.114814448164607,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290012154876366,0,0,0,0,0,0,0.0890320356467374,0,0,0,0.10115778085555,0,0.62962469366128,0,0.616067160352178,0,0,1.11194531462352,0.572499546967965,0,0,0,0,0,0.636406495851874,1.56989728039846,0,0.54907405947211,0.117812402345686,0.202182481573316,0,0.421258456238981,0,0,0,0,0,0,1.10273068709225,0,0.438450885253763,0,0,0.811641507850816,0.30982349809975,0.281695602532241,0,0,0.35667105148125,0,0,0,0,0,0.384888450902048,0,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.701139929541673,0.554805861502613,0.189403005275089,0.251567901752575,0,0.686520205190771,0,0.15543720058278,0.147855149989634,0,0,0.155262956876259,0,0,0,0,0,0.406870733204662,0.545545977607678,0.107410557042488,0.928067519756987,0,0,0,0.336749488765919,0,0,0,0.260994291965212,0.226705925512272,0.231522474323834,0.244736704506468,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr9:118431048..118431059,+ | |short_description=p@chr9:118431048..118431059,+ | ||
}} | }} |
Latest revision as of 22:10, 31 July 2015
Short description: | p@chr9:118431048..118431059, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:118431048..118431059, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the carotid artery | 1.54e-15 | 2 |
smooth muscle cell of the brachiocephalic vasculature | 2.05e-15 | 2 |
preadipocyte of the breast | 8.99e-11 | 3 |
duct epithelial cell | 1.20e-10 | 3 |
branched duct epithelial cell | 1.20e-10 | 3 |
tracheal epithelial cell | 1.20e-10 | 3 |
tracheoblast | 1.20e-10 | 3 |
vascular associated smooth muscle cell | 1.18e-08 | 32 |
fibroblast of tunica adventitia of artery | 1.82e-08 | 4 |
fibroblast of the aortic adventitia | 1.82e-08 | 4 |
smooth muscle cell of the subclavian artery | 6.39e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
carotid artery segment | 1.54e-15 | 2 |
brachiocephalic artery | 2.05e-15 | 2 |
brachiocephalic vasculature | 2.05e-15 | 2 |
systemic artery | 3.18e-14 | 33 |
systemic arterial system | 3.18e-14 | 33 |
artery | 2.75e-11 | 42 |
arterial blood vessel | 2.75e-11 | 42 |
arterial system | 2.75e-11 | 42 |
splanchnic layer of lateral plate mesoderm | 7.02e-09 | 83 |
artery wall | 1.82e-08 | 4 |
tunica adventitia of artery | 1.82e-08 | 4 |
adventitia | 1.82e-08 | 4 |
tunica adventitia of blood vessel | 1.82e-08 | 4 |
aorta tunica adventitia | 1.82e-08 | 4 |
aorta wall | 1.82e-08 | 4 |
epithelial tube open at both ends | 3.63e-08 | 59 |
blood vessel | 3.63e-08 | 59 |
blood vasculature | 3.63e-08 | 59 |
vascular cord | 3.63e-08 | 59 |
vessel | 3.87e-07 | 68 |
thoracic segment blood vessel | 6.39e-07 | 5 |
subclavian artery | 6.39e-07 | 5 |
cardiovascular system | 8.11e-07 | 109 |