FFCP PHASE1:Hg19::chr4:152020736..152020788,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6189 | |EntrezGene=6189 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10421 | |HGNC=10421 | ||
|TSSclassifier=strong | |||
|UniProt=F5H4F9,D6RGE0,D6RED7,D6R9B6,D6RAT0,D6RI02,P61247 | |UniProt=F5H4F9,D6RGE0,D6RED7,D6R9B6,D6RAT0,D6RI02,P61247 | ||
|association_with_transcript=0bp_to_ENST00000322686,ENST00000503002,ENST00000505243,ENST00000507485,ENST00000509736,ENST00000514682,ENST00000515818,NM_001006,uc003ilz.2,uc011cie.1_5end | |association_with_transcript=0bp_to_ENST00000322686,ENST00000503002,ENST00000505243,ENST00000507485,ENST00000509736,ENST00000514682,ENST00000515818,NM_001006,uc003ilz.2,uc011cie.1_5end | ||
|cluster_id=chr4:152020736..152020788,+ | |||
|coexpression_cluster_id=C1598 | |||
|description=CAGE_peak_1_at_RPS3A_5end | |description=CAGE_peak_1_at_RPS3A_5end | ||
|id=chr4:152020736..152020788,+ | |id=chr4:152020736..152020788,+ | ||
|ontology_enrichment_celltype=CL:0000003!5.16e-35!722;CL:0000012!2.25e-34!682;CL:0000548!6.43e-32!679;CL:0000004!6.43e-32!679;CL:0000255!6.43e-32!679;CL:0000144!1.94e-28!625;CL:0002371!3.51e-23!591;CL:0000034!8.87e-20!444;CL:0000723!2.96e-17!436;CL:0000048!1.18e-16!430;CL:0000063!4.03e-12!578;CL:0000393!1.47e-10!60;CL:0000211!1.47e-10!60;CL:0002032!1.05e-09!165;CL:0000837!1.05e-09!165;CL:0000037!1.84e-09!172;CL:0000566!1.84e-09!172;CL:0000860!3.34e-09!45;CL:0000680!4.33e-09!57;CL:0000056!4.33e-09!57;CL:0000355!4.33e-09!57;CL:0002057!4.45e-09!42;CL:0000187!6.41e-09!54;CL:0000988!1.50e-08!182;CL:0002031!4.43e-08!124;CL:0000134!8.36e-08!358;CL:0002320!1.00e-07!365;CL:0000219!1.41e-07!390;CL:0000183!8.65e-07!59 | |ontology_enrichment_celltype=CL:0000003!5.16e-35!722;CL:0000012!2.25e-34!682;CL:0000548!6.43e-32!679;CL:0000004!6.43e-32!679;CL:0000255!6.43e-32!679;CL:0000144!1.94e-28!625;CL:0002371!3.51e-23!591;CL:0000034!8.87e-20!444;CL:0000723!2.96e-17!436;CL:0000048!1.18e-16!430;CL:0000063!4.03e-12!578;CL:0000393!1.47e-10!60;CL:0000211!1.47e-10!60;CL:0002032!1.05e-09!165;CL:0000837!1.05e-09!165;CL:0000037!1.84e-09!172;CL:0000566!1.84e-09!172;CL:0000860!3.34e-09!45;CL:0000680!4.33e-09!57;CL:0000056!4.33e-09!57;CL:0000355!4.33e-09!57;CL:0002057!4.45e-09!42;CL:0000187!6.41e-09!54;CL:0000988!1.50e-08!182;CL:0002031!4.43e-08!124;CL:0000134!8.36e-08!358;CL:0002320!1.00e-07!365;CL:0000219!1.41e-07!390;CL:0000183!8.65e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.65e-08;33!CL:0002057;4.65e-08;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,2.38e-19,441;CL:0000723,7.34e-17,433;CL:0000048,2.85e-16,427;CL:0000393,2.30e-10,61;CL:0000211,2.30e-10,61;CL:0002032,9.59e-10,161;CL:0000837,9.59e-10,161;CL:0000037,1.71e-09,168;CL:0000860,4.45e-09,42;CL:0002057,4.45e-09,42;CL:0000680,6.46e-09,58;CL:0000056,6.46e-09,58;CL:0000355,6.46e-09,58;CL:0000187,9.68e-09,55;CL:0000988,1.32e-08,177;CL:0002031,3.82e-08,120;CL:0000134,1.36e-07,354;CL:0002320,1.63e-07,361;CL:0000219,2.31e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;7.27e-07;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!5.32e-10!83;UBERON:0002329!5.32e-10!83;UBERON:0003077!5.32e-10!83;UBERON:0003059!5.32e-10!83;UBERON:0007282!5.32e-10!83;UBERON:0009618!5.32e-10!83;UBERON:0007285!5.32e-10!83;UBERON:0004290!1.42e-09!70;UBERON:0002204!2.49e-09!167;UBERON:0001134!6.98e-08!61;UBERON:0002036!6.98e-08!61;UBERON:0003082!6.98e-08!61;UBERON:0000486!7.32e-08!82;UBERON:0002384!4.02e-07!375;UBERON:0002385!7.03e-07!63;UBERON:0001015!7.03e-07!63;UBERON:0000383!7.03e-07!63 | |ontology_enrichment_uberon=UBERON:0000914!5.32e-10!83;UBERON:0002329!5.32e-10!83;UBERON:0003077!5.32e-10!83;UBERON:0003059!5.32e-10!83;UBERON:0007282!5.32e-10!83;UBERON:0009618!5.32e-10!83;UBERON:0007285!5.32e-10!83;UBERON:0004290!1.42e-09!70;UBERON:0002204!2.49e-09!167;UBERON:0001134!6.98e-08!61;UBERON:0002036!6.98e-08!61;UBERON:0003082!6.98e-08!61;UBERON:0000486!7.32e-08!82;UBERON:0002384!4.02e-07!375;UBERON:0002385!7.03e-07!63;UBERON:0001015!7.03e-07!63;UBERON:0000383!7.03e-07!63 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,2.02e-09,71;UBERON:0003059,2.02e-09,71;UBERON:0007282,2.02e-09,71;UBERON:0004290,2.02e-09,71;UBERON:0009618,2.02e-09,71;UBERON:0002204,2.25e-09,167;UBERON:0003077,5.13e-09,72;UBERON:0007285,5.13e-09,72;UBERON:0007524,8.39e-09,73;UBERON:0000486,9.43e-08,83;UBERON:0001134,9.69e-08,62;UBERON:0002036,9.69e-08,62;UBERON:0003082,9.69e-08,62;UBERON:0007503,2.82e-07,78;UBERON:0002384,6.43e-07,371;UBERON:0002385,9.28e-07,64;UBERON:0001015,9.28e-07,64;UBERON:0000383,9.28e-07,64 | |||
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| ||
|short_description=p1@RPS3A | |short_description=p1@RPS3A | ||
}} | }} |
Latest revision as of 02:25, 16 September 2015
Short description: | p1@RPS3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPS3A_5end |
Coexpression cluster: | C1598_CD34_CD133_CD4_CD8_Smooth_Cardiac_acute |
Association with transcript: | 0bp_to_ENST00000322686, ENST00000503002, ENST00000505243, ENST00000507485, ENST00000509736, ENST00000514682, ENST00000515818, NM_001006, uc003ilz.2, uc011cie.1_5end |
EntrezGene: | RPS3A |
HGNC: | 10421 |
UniProt: | F5H4F9D6RGE0D6RED7D6R9B6D6RAT0D6RI02P61247 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stem cell | 2.38e-19 | 441 |
somatic stem cell | 7.34e-17 | 433 |
multi fate stem cell | 2.85e-16 | 427 |
electrically responsive cell | 2.30e-10 | 61 |
electrically active cell | 2.30e-10 | 61 |
hematopoietic oligopotent progenitor cell | 9.59e-10 | 161 |
hematopoietic multipotent progenitor cell | 9.59e-10 | 161 |
hematopoietic stem cell | 1.71e-09 | 168 |
classical monocyte | 4.45e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.45e-09 | 42 |
muscle precursor cell | 6.46e-09 | 58 |
myoblast | 6.46e-09 | 58 |
multi-potent skeletal muscle stem cell | 6.46e-09 | 58 |
muscle cell | 9.68e-09 | 55 |
hematopoietic cell | 1.32e-08 | 177 |
hematopoietic lineage restricted progenitor cell | 3.82e-08 | 120 |
mesenchymal cell | 1.36e-07 | 354 |
connective tissue cell | 1.63e-07 | 361 |
motile cell | 2.31e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
somite | 2.02e-09 | 71 |
presomitic mesoderm | 2.02e-09 | 71 |
presumptive segmental plate | 2.02e-09 | 71 |
dermomyotome | 2.02e-09 | 71 |
trunk paraxial mesoderm | 2.02e-09 | 71 |
musculoskeletal system | 2.25e-09 | 167 |
paraxial mesoderm | 5.13e-09 | 72 |
presumptive paraxial mesoderm | 5.13e-09 | 72 |
dense mesenchyme tissue | 8.39e-09 | 73 |
multilaminar epithelium | 9.43e-08 | 83 |
skeletal muscle tissue | 9.69e-08 | 62 |
striated muscle tissue | 9.69e-08 | 62 |
myotome | 9.69e-08 | 62 |
epithelial vesicle | 2.82e-07 | 78 |
connective tissue | 6.43e-07 | 371 |
muscle tissue | 9.28e-07 | 64 |
musculature | 9.28e-07 | 64 |
musculature of body | 9.28e-07 | 64 |