FFCP PHASE1:Hg19::chr3:57557556..57557570,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=378 | |EntrezGene=378 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=655 | |HGNC=655 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-275bp_to_U91921_5end | |association_with_transcript=-275bp_to_U91921_5end | ||
|cluster_id=chr3:57557556..57557570,- | |||
|description=CAGE_peak_12_at_ARF4_5end | |description=CAGE_peak_12_at_ARF4_5end | ||
|id=chr3:57557556..57557570,- | |id=chr3:57557556..57557570,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000511;1.31e-14;1!CL:0002625;1.31e-14;1!CL:0000216;1.31e-14;1!CL:0002589;5.94e-08;2!CL:0002596;5.94e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000511,6.22e-15,1;CL:0002625,6.22e-15,1;CL:0000216,6.22e-15,1;CL:0002596,4.69e-08,2;CL:0002589,6.15e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060084;1.24e-18;3!DOID:127;1.24e-18;3!DOID:0060072;3.15e-14;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,6.63e-19,3;DOID:127,6.63e-19,3;DOID:0060072,1.97e-14,4 | |||
|ontology_enrichment_uberon=UBERON:0000490!5.68e-07!138 | |ontology_enrichment_uberon=UBERON:0000490!5.68e-07!138 | ||
|ontology_enrichment_uberon_v019=UBERON:0007029;1.31e-14;1!UBERON:0001136;1.31e-14;1!UBERON:0001343;1.31e-14;1!UBERON:0007195;1.31e-14;1!UBERON:0004910;1.31e-14;1!UBERON:0004813;1.31e-14;1!UBERON:0004909;5.94e-08;2!UBERON:0001529;5.94e-08;2!UBERON:0005396;5.94e-08;2!UBERON:0007204;5.94e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,6.22e-15,1;UBERON:0001343,6.22e-15,1;UBERON:0004910,6.22e-15,1;UBERON:0005154,6.22e-15,1;UBERON:0005295,6.22e-15,1;UBERON:0004813,6.22e-15,1;UBERON:0005297,6.22e-15,1;UBERON:0005294,6.22e-15,1;UBERON:0010141,6.22e-15,1;UBERON:0005891,6.22e-15,1;UBERON:0007029,9.36e-15,1;UBERON:0007195,2.41e-14,1;UBERON:0004122,1.11e-08,15;UBERON:0004909,4.09e-08,2;UBERON:0005396,4.69e-08,2;UBERON:0001529,6.15e-08,2;UBERON:0007204,6.15e-08,2;UBERON:0004871,9.39e-08,8 | |||
|phase1_expression=0.726713517082227,0.214100523890983,0.704772020479856,0,0,0,0,0.631719873426831,0.522371256399677,0,0,0,0.263766978228454,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0.164201178899891,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0.290796477559129,0,0,0,0,0,0,0,0,0.344745680736619,1.29096936716765,0,0.564727018627814,0.272906150057846,0,0.306083892370903,0.320929027076094,0.639337125799041,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0,0.795285947051099,0.486634870302636,0.0945348171640679,0.221729397462564,0.087834785693126,0,0,0.370784442784429,0,0,0.26591592103773,0.238490624305342,0,0,0.39752481473341,0,0,0.56530794192401,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0,0,0,0.267899184852239,0,0,0,0,0,0,0,0,0.496971951695318,0.759783069987479,0.132409180813219,0,0.354668382198357,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0.298897361103602,0,0,0,0.204154171254893,0,0,1.18800285728205,0.247266929278557,0,0,0,0,0,0,0.30648779579902,0,0.113432183160021,0,0,0,0,0,0,0.18611685633159,0,0,0,0.184099797284599,0,0,0.10075209822764,0.169560592310488,0,0.272746120590835,0.286804595389004,0,0,0.116193942869518,0,0,0.36497735907583,0,0,0,0.464367928031979,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0.590789906681404,0,0.245976877086227,0,0.219500570817251,0,0,0.0925884451585296,0,0,0,0.115930404975077,0.117408694235822,0,0.925971025153221,0,0,0,0.246217006087397,0,0,0,0.16798212819886,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0,0.381988425558278,1.17217447210047,0,0,0,0,0,0,0,0.517086863031111,0,0,2.12750493267896,0,0.257207374262142,0,0,0.142977993658148,0.542621605391443,0,0,0,0,0.301439377059586,0,0.699810938274399,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0.76228387266739,0,0,0,0,0.749007023947182,0,0,0.24538298343828,0,0,0.415941723061614,0,0.157702415033935,0,0,0,1.03473071292505,0,0,0.781952530212746,0,0,0,0,0,0.606255142892519,0,0.604780586659361,0,0.153461973288062,0.561320188866147,0.384417447767103,0.511707249066704,0.321707842287215,0,0,0,0.492762936082855,0,0,0.846016147141356,1.40354529212299,0.552485933615378,0.229628896329213,0,1.57349297951309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0.574265537996172,0,1.6068392984416,0.386682873168488,0,0,0,0.429680979473094,0,0,0.445160178233687,0.991709492165869,0,0,0.10115778085555,0,0.31481234683064,0.6970372701606,0.308033580176089,0,0,1.29726953372744,0.286249773483982,0.372158369359667,0,0.190630193923825,0,0,0.636406495851874,1.56989728039846,0,0,0.117812402345686,0.606547444719948,0,0,0,0,0,0.272999822815972,0.707027159768564,0,0,0,0.438450885253763,0.578775534266688,0,0.608731130888112,0,0.281695602532241,0,0.0982490410131212,0,0.354761064070598,0.422215270595328,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0.121360521749513,0.222886768554957,0.284136146806413,0,0,0,0,0,0.445234820091624,0,0,0.19924798825107,0,0,0,0,0,0.0898683511473268,0,0,0,0,1.11136990144637,0,0.0927680981618513,0,0,0,0,0.1137934482855,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448788222048861,0.217294743844016,0.31900115973192,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0.216388639742091,0,0,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19351266257817,0,0.164230914106418,0.0969890164884194,0.176512253383001,0,0.274083849293502,0,0,0,0.0801588202515337,0.213452994739353,0.19980960958213,0,0,0,0.14405479798815,0,0,0.271808412147228,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0.0824158583811665,0.13480708770837,0,0,0,0.136203406111576,0,0,0.415440338029185,0,0,0.0607495566580247,0.335434687599266,0,0,0.105600336519406,0,0,0,0,0,1.62899880526114,0.864221491201268,1.30634944043764,0,0,0,0.113312091520126,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0,0,0,0,0,0,0.303298235083296,0.856396000634902,0,0,0,0,0,0,0,0,0.889811221596536,0,0.151230923763239,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,1.03018711554838,0.673498977531838,0,0,0.214441591374926,0,0,0,0,0.179088841081487,0,0.219284049578707,0.176689145945881,0.192914038270915,0.168942440653073,0,0.690860683462397,0.303859956177382,0,0,0.132864840313363,0,0.327609848846413,0.245772908753719,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0.11796972334774,0,0.115525666150338,0.381382095467167,0,0,0.0752103283492573,0,0,0,0,0.443568258651136,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.111231401892069,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.170426809518315,0,0.22910686854405,0,0,0,0.098150233615243,0.121917924982269,0,0,0,1.45713297917742,0.233939463462106,0,0,0.11294608203896,0,0,0.0771741581079447,0,0,0,0.235676547101626,0,0,0,0,0,0,0,0.178553938605658,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0.218531143927391,0.253397002022874,0.101988829741982,0,0,0,0.530450887527676,0,0,0,0.213233981900981,0,0.129177819672012,0.0620747142958579,0.112131862580613,0.25458863311266,0,0,0,0,0,0,0,0.747091421144008,0,0.179650404213174,0,0,0,0,0,0 | |phase1_expression=0.726713517082227,0.214100523890983,0.704772020479856,0,0,0,0,0.631719873426831,0.522371256399677,0,0,0,0.263766978228454,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0.164201178899891,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0.290796477559129,0,0,0,0,0,0,0,0,0.344745680736619,1.29096936716765,0,0.564727018627814,0.272906150057846,0,0.306083892370903,0.320929027076094,0.639337125799041,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0,0.795285947051099,0.486634870302636,0.0945348171640679,0.221729397462564,0.087834785693126,0,0,0.370784442784429,0,0,0.26591592103773,0.238490624305342,0,0,0.39752481473341,0,0,0.56530794192401,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0,0,0,0.267899184852239,0,0,0,0,0,0,0,0,0.496971951695318,0.759783069987479,0.132409180813219,0,0.354668382198357,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0.298897361103602,0,0,0,0.204154171254893,0,0,1.18800285728205,0.247266929278557,0,0,0,0,0,0,0.30648779579902,0,0.113432183160021,0,0,0,0,0,0,0.18611685633159,0,0,0,0.184099797284599,0,0,0.10075209822764,0.169560592310488,0,0.272746120590835,0.286804595389004,0,0,0.116193942869518,0,0,0.36497735907583,0,0,0,0.464367928031979,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0.590789906681404,0,0.245976877086227,0,0.219500570817251,0,0,0.0925884451585296,0,0,0,0.115930404975077,0.117408694235822,0,0.925971025153221,0,0,0,0.246217006087397,0,0,0,0.16798212819886,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0,0.381988425558278,1.17217447210047,0,0,0,0,0,0,0,0.517086863031111,0,0,2.12750493267896,0,0.257207374262142,0,0,0.142977993658148,0.542621605391443,0,0,0,0,0.301439377059586,0,0.699810938274399,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0.76228387266739,0,0,0,0,0.749007023947182,0,0,0.24538298343828,0,0,0.415941723061614,0,0.157702415033935,0,0,0,1.03473071292505,0,0,0.781952530212746,0,0,0,0,0,0.606255142892519,0,0.604780586659361,0,0.153461973288062,0.561320188866147,0.384417447767103,0.511707249066704,0.321707842287215,0,0,0,0.492762936082855,0,0,0.846016147141356,1.40354529212299,0.552485933615378,0.229628896329213,0,1.57349297951309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0.574265537996172,0,1.6068392984416,0.386682873168488,0,0,0,0.429680979473094,0,0,0.445160178233687,0.991709492165869,0,0,0.10115778085555,0,0.31481234683064,0.6970372701606,0.308033580176089,0,0,1.29726953372744,0.286249773483982,0.372158369359667,0,0.190630193923825,0,0,0.636406495851874,1.56989728039846,0,0,0.117812402345686,0.606547444719948,0,0,0,0,0,0.272999822815972,0.707027159768564,0,0,0,0.438450885253763,0.578775534266688,0,0.608731130888112,0,0.281695602532241,0,0.0982490410131212,0,0.354761064070598,0.422215270595328,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0.121360521749513,0.222886768554957,0.284136146806413,0,0,0,0,0,0.445234820091624,0,0,0.19924798825107,0,0,0,0,0,0.0898683511473268,0,0,0,0,1.11136990144637,0,0.0927680981618513,0,0,0,0,0.1137934482855,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448788222048861,0.217294743844016,0.31900115973192,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0.216388639742091,0,0,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19351266257817,0,0.164230914106418,0.0969890164884194,0.176512253383001,0,0.274083849293502,0,0,0,0.0801588202515337,0.213452994739353,0.19980960958213,0,0,0,0.14405479798815,0,0,0.271808412147228,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0.0824158583811665,0.13480708770837,0,0,0,0.136203406111576,0,0,0.415440338029185,0,0,0.0607495566580247,0.335434687599266,0,0,0.105600336519406,0,0,0,0,0,1.62899880526114,0.864221491201268,1.30634944043764,0,0,0,0.113312091520126,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0,0,0,0,0,0,0.303298235083296,0.856396000634902,0,0,0,0,0,0,0,0,0.889811221596536,0,0.151230923763239,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,1.03018711554838,0.673498977531838,0,0,0.214441591374926,0,0,0,0,0.179088841081487,0,0.219284049578707,0.176689145945881,0.192914038270915,0.168942440653073,0,0.690860683462397,0.303859956177382,0,0,0.132864840313363,0,0.327609848846413,0.245772908753719,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0.11796972334774,0,0.115525666150338,0.381382095467167,0,0,0.0752103283492573,0,0,0,0,0.443568258651136,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.111231401892069,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.170426809518315,0,0.22910686854405,0,0,0,0.098150233615243,0.121917924982269,0,0,0,1.45713297917742,0.233939463462106,0,0,0.11294608203896,0,0,0.0771741581079447,0,0,0,0.235676547101626,0,0,0,0,0,0,0,0.178553938605658,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0.218531143927391,0.253397002022874,0.101988829741982,0,0,0,0.530450887527676,0,0,0,0.213233981900981,0,0.129177819672012,0.0620747142958579,0.112131862580613,0.25458863311266,0,0,0,0,0,0,0,0.747091421144008,0,0.179650404213174,0,0,0,0,0,0 | ||
|short_description=p12@ARF4 | |short_description=p12@ARF4 | ||
}} | }} |
Latest revision as of 04:19, 19 September 2015
Short description: | p12@ARF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_ARF4_5end |
Coexpression cluster: | NA |
Association with transcript: | -275bp_to_U91921_5end |
EntrezGene: | ARF4 |
HGNC: | 655 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 6.22e-15 | 1 |
seminiferous tubule epithelial cell | 6.22e-15 | 1 |
Sertoli cell | 6.22e-15 | 1 |
smooth muscle cell of the carotid artery | 4.69e-08 | 2 |
smooth muscle cell of the brachiocephalic vasculature | 6.15e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 6.22e-15 | 1 |
seminiferous tubule of testis | 6.22e-15 | 1 |
epithelium of male gonad | 6.22e-15 | 1 |
epithelial cord | 6.22e-15 | 1 |
sex cord | 6.22e-15 | 1 |
seminiferous tubule epithelium | 6.22e-15 | 1 |
testis sex cord | 6.22e-15 | 1 |
genital ridge | 6.22e-15 | 1 |
primitive sex cord of indifferent gonad | 6.22e-15 | 1 |
coelomic epithelium | 6.22e-15 | 1 |
surface | 9.36e-15 | 1 |
stroma of bone marrow | 2.41e-14 | 1 |
genitourinary system | 1.11e-08 | 15 |
epithelium of gonad | 4.09e-08 | 2 |
carotid artery segment | 4.69e-08 | 2 |
brachiocephalic artery | 6.15e-08 | 2 |
brachiocephalic vasculature | 6.15e-08 | 2 |
somatic layer of lateral plate mesoderm | 9.39e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 6.63e-19 | 3 |
leiomyoma | 6.63e-19 | 3 |
benign neoplasm | 1.97e-14 | 4 |