FFCP PHASE1:Hg19::chr8:120428643..120428661,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4856 | |EntrezGene=4856 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7885 | |HGNC=7885 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-28bp_to_ENST00000520082_5end | |association_with_transcript=-28bp_to_ENST00000520082_5end | ||
|cluster_id=chr8:120428643..120428661,+ | |||
|coexpression_cluster_id=C4722 | |||
|description=CAGE_peak_3_at_NOV_5end | |description=CAGE_peak_3_at_NOV_5end | ||
|id=chr8:120428643..120428661,+ | |id=chr8:120428643..120428661,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000147;1.51e-10;14!CL:0000149;5.21e-08;4!CL:0000148;2.22e-07;10!CL:0000775;2.92e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,1.37e-10,14;CL:0000149,4.48e-08,4;CL:0000775,2.08e-07,3;CL:0000148,2.26e-07,10;CL:0000541,2.26e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.77e-08;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.40e-21!115;UBERON:0005743!3.59e-14!86;UBERON:0000073!1.65e-12!94;UBERON:0001016!1.65e-12!94;UBERON:0001017!2.19e-12!82;UBERON:0003075!1.03e-10!86;UBERON:0007284!1.03e-10!86;UBERON:0001893!2.67e-10!34;UBERON:0001869!4.59e-10!32;UBERON:0002619!7.51e-10!22;UBERON:0002346!8.10e-10!90;UBERON:0002791!1.00e-09!33;UBERON:0002020!1.21e-09!34;UBERON:0003528!1.21e-09!34;UBERON:0002780!2.05e-09!41;UBERON:0001890!2.05e-09!41;UBERON:0006240!2.05e-09!41;UBERON:0000955!2.23e-09!69;UBERON:0006238!2.23e-09!69;UBERON:0003056!2.65e-09!61;UBERON:0001049!2.70e-09!57;UBERON:0005068!2.70e-09!57;UBERON:0006241!2.70e-09!57;UBERON:0007135!2.70e-09!57;UBERON:0000956!3.25e-09!25;UBERON:0000203!3.25e-09!25;UBERON:0001950!4.37e-09!20;UBERON:0003080!6.43e-09!42;UBERON:0000033!1.62e-08!123;UBERON:0000153!2.36e-08!129;UBERON:0007811!2.36e-08!129;UBERON:0000062!2.79e-08!511;UBERON:0001737!2.81e-08!9;UBERON:0004121!4.58e-08!169;UBERON:0002616!9.77e-08!59;UBERON:0000924!1.34e-07!173;UBERON:0006601!1.34e-07!173;UBERON:0000064!3.38e-07!219 | |ontology_enrichment_uberon=UBERON:0007023!1.40e-21!115;UBERON:0005743!3.59e-14!86;UBERON:0000073!1.65e-12!94;UBERON:0001016!1.65e-12!94;UBERON:0001017!2.19e-12!82;UBERON:0003075!1.03e-10!86;UBERON:0007284!1.03e-10!86;UBERON:0001893!2.67e-10!34;UBERON:0001869!4.59e-10!32;UBERON:0002619!7.51e-10!22;UBERON:0002346!8.10e-10!90;UBERON:0002791!1.00e-09!33;UBERON:0002020!1.21e-09!34;UBERON:0003528!1.21e-09!34;UBERON:0002780!2.05e-09!41;UBERON:0001890!2.05e-09!41;UBERON:0006240!2.05e-09!41;UBERON:0000955!2.23e-09!69;UBERON:0006238!2.23e-09!69;UBERON:0003056!2.65e-09!61;UBERON:0001049!2.70e-09!57;UBERON:0005068!2.70e-09!57;UBERON:0006241!2.70e-09!57;UBERON:0007135!2.70e-09!57;UBERON:0000956!3.25e-09!25;UBERON:0000203!3.25e-09!25;UBERON:0001950!4.37e-09!20;UBERON:0003080!6.43e-09!42;UBERON:0000033!1.62e-08!123;UBERON:0000153!2.36e-08!129;UBERON:0007811!2.36e-08!129;UBERON:0000062!2.79e-08!511;UBERON:0001737!2.81e-08!9;UBERON:0004121!4.58e-08!169;UBERON:0002616!9.77e-08!59;UBERON:0000924!1.34e-07!173;UBERON:0006601!1.34e-07!173;UBERON:0000064!3.38e-07!219 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.34e-17;9!UBERON:0001557;6.34e-17;9!UBERON:0002619;1.48e-12;22!UBERON:0001950;6.14e-12;20!UBERON:0000956;1.09e-10;25!UBERON:0000203;1.09e-10;25!UBERON:0001869;1.19e-10;32!UBERON:0001893;3.45e-10;34!UBERON:0002791;2.04e-09;32!UBERON:0003528;2.40e-09;34!UBERON:0002020;2.40e-09;34!UBERON:0000200;5.45e-08;6!UBERON:0002780;1.77e-07;41!UBERON:0001890;1.77e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.43e-17,9;UBERON:0002619,8.02e-13,22;UBERON:0001869,2.88e-12,32;UBERON:0001950,3.21e-12,20;UBERON:0003056,7.87e-12,61;UBERON:0002780,2.39e-11,41;UBERON:0001890,2.39e-11,41;UBERON:0003080,2.39e-11,41;UBERON:0006240,2.39e-11,41;UBERON:0001893,2.66e-11,34;UBERON:0000956,6.45e-11,25;UBERON:0000203,6.45e-11,25;UBERON:0002791,1.08e-10,32;UBERON:0003528,7.69e-10,34;UBERON:0002020,7.69e-10,34;UBERON:0003075,8.37e-10,82;UBERON:0007284,8.37e-10,82;UBERON:0001017,4.98e-09,81;UBERON:0002346,5.06e-09,86;UBERON:0007023,1.44e-08,114;UBERON:0010371,2.16e-08,104;UBERON:0001016,3.25e-08,89;UBERON:0001049,5.47e-08,56;UBERON:0005068,5.47e-08,56;UBERON:0006241,5.47e-08,56;UBERON:0007135,5.47e-08,56;UBERON:0000200,9.83e-08,6;UBERON:0000073,1.01e-07,53;UBERON:0002616,1.01e-07,53;UBERON:0001781,1.02e-07,4;UBERON:0000955,4.29e-07,68;UBERON:0006238,4.29e-07,68;UBERON:0001557,4.30e-07,19 | |||
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| ||
|short_description=p3@NOV | |short_description=p3@NOV | ||
}} | }} |
Latest revision as of 21:23, 15 September 2015
Short description: | p3@NOV |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NOV_5end |
Coexpression cluster: | C4722_osteosarcoma_Neutrophils_aorta_Melanocyte_melanoma_Eosinophils_medial |
Association with transcript: | -28bp_to_ENST00000520082_5end |
EntrezGene: | NOV |
HGNC: | 7885 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 1.37e-10 | 14 |
visual pigment cell | 4.48e-08 | 4 |
neutrophil | 2.08e-07 | 3 |
melanocyte | 2.26e-07 | 10 |
melanoblast | 2.26e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.43e-17 | 9 |
regional part of cerebral cortex | 8.02e-13 | 22 |
cerebral hemisphere | 2.88e-12 | 32 |
neocortex | 3.21e-12 | 20 |
pre-chordal neural plate | 7.87e-12 | 61 |
regional part of forebrain | 2.39e-11 | 41 |
forebrain | 2.39e-11 | 41 |
anterior neural tube | 2.39e-11 | 41 |
future forebrain | 2.39e-11 | 41 |
telencephalon | 2.66e-11 | 34 |
cerebral cortex | 6.45e-11 | 25 |
pallium | 6.45e-11 | 25 |
regional part of telencephalon | 1.08e-10 | 32 |
brain grey matter | 7.69e-10 | 34 |
gray matter | 7.69e-10 | 34 |
neural plate | 8.37e-10 | 82 |
presumptive neural plate | 8.37e-10 | 82 |
central nervous system | 4.98e-09 | 81 |
neurectoderm | 5.06e-09 | 86 |
adult organism | 1.44e-08 | 114 |
ecto-epithelium | 2.16e-08 | 104 |
nervous system | 3.25e-08 | 89 |
neural tube | 5.47e-08 | 56 |
neural rod | 5.47e-08 | 56 |
future spinal cord | 5.47e-08 | 56 |
neural keel | 5.47e-08 | 56 |
gyrus | 9.83e-08 | 6 |
regional part of nervous system | 1.01e-07 | 53 |
regional part of brain | 1.01e-07 | 53 |
layer of retina | 1.02e-07 | 4 |
brain | 4.29e-07 | 68 |
future brain | 4.29e-07 | 68 |
upper respiratory tract | 4.30e-07 | 19 |