FFCP PHASE1:Hg19::chr6:21666129..21666155,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=401237 | |EntrezGene=401237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=28245 | |HGNC=28245 | ||
|TSSclassifier=strong | |||
|UniProt=B4DUU8 | |UniProt=B4DUU8 | ||
|association_with_transcript=-490bp_to_AK300802_5end | |association_with_transcript=-490bp_to_AK300802_5end | ||
|cluster_id=chr6:21666129..21666155,+ | |||
|coexpression_cluster_id=C724 | |||
|description=CAGE_peak_8_at_LINC00340_5end | |description=CAGE_peak_8_at_LINC00340_5end | ||
|id=chr6:21666129..21666155,+ | |id=chr6:21666129..21666155,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.48e-13!5;CL:0002605!9.53e-09!3;CL:0000064!1.23e-08!3;CL:0005012!1.23e-08!3;CL:0000067!1.23e-08!3;CL:0002304!1.23e-08!3;CL:0000540!7.94e-08!6;CL:0000031!7.94e-08!6;CL:0000404!7.94e-08!6;CL:0000133!4.89e-07!59 | |ontology_enrichment_celltype=CL:0002322!1.48e-13!5;CL:0002605!9.53e-09!3;CL:0000064!1.23e-08!3;CL:0005012!1.23e-08!3;CL:0000067!1.23e-08!3;CL:0002304!1.23e-08!3;CL:0000540!7.94e-08!6;CL:0000031!7.94e-08!6;CL:0000404!7.94e-08!6;CL:0000133!4.89e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000540;1.24e-23;6!CL:0000404;1.24e-23;6!CL:1001319;4.72e-17;1!CL:1000600;4.72e-17;1!CL:0002319;2.25e-09;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,9.87e-24,6;CL:0000031,9.87e-24,6;CL:0000404,9.87e-24,6;CL:0000047,5.58e-18,8;CL:1001319,4.72e-17,1;CL:1000600,4.72e-17,1;CL:0002319,2.20e-09,25 | |||
|ontology_enrichment_development_v019=CL:0000031;1.24e-23;6 | |||
|ontology_enrichment_disease=DOID:5409!9.69e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:5409;2.85e-16;4!DOID:1325;1.04e-09;7!DOID:3904;1.04e-09;7!DOID:3905;9.52e-08;9 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,3.07e-16,4;DOID:1325,1.09e-09,7;DOID:3904,1.09e-09,7;DOID:3905,9.85e-08,9 | |||
|ontology_enrichment_uberon=UBERON:0001778!1.23e-08!3;UBERON:0001775!1.23e-08!3;UBERON:0000922!5.04e-07!612 | |ontology_enrichment_uberon=UBERON:0001778!1.23e-08!3;UBERON:0001775!1.23e-08!3;UBERON:0000922!5.04e-07!612 | ||
|ontology_enrichment_uberon_v019=UBERON:0004645;4.72e-17;1!UBERON:0001256;4.72e-17;1!UBERON:0001259;4.72e-17;1!UBERON:0002134;1.93e-16;1!UBERON:0005208;1.93e-16;1!UBERON:0004145;1.93e-16;1!UBERON:0005946;1.93e-16;1!UBERON:0005965;1.93e-16;1!UBERON:0002078;1.93e-16;1!UBERON:0001255;3.43e-09;2!UBERON:0001556;3.43e-09;2!UBERON:0002081;6.93e-09;2!UBERON:0002133;6.93e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,4.72e-17,1;UBERON:0001256,4.72e-17,1;UBERON:0001259,4.72e-17,1;UBERON:0002134,2.25e-16,1;UBERON:0005208,2.25e-16,1;UBERON:0005946,2.25e-16,1;UBERON:0005965,2.25e-16,1;UBERON:0002078,2.25e-16,1;UBERON:0001255,3.43e-09,2;UBERON:0001556,3.43e-09,2;UBERON:0002081,7.49e-09,2;UBERON:0002133,7.49e-09,2;UBERON:0010227,7.49e-09,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.684372125364421,1.25542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472674085820339,0.665188192387692,0.43917392846563,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0,0,0,0,0,1.06748995729705,0,0,0.134710672069688,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,1.45782745153634,0.464775771478074,0.725627385107593,0.756962552626885,2.18986415445498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0,0.200506470303285,0,0,0,0,0,0.0770153371044148,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0.15350367472613,0.137836572484531,0,0,0,0,0.165284915360978,0,0.382838137483752,0.10115778085555,0,0,0,0.616067160352178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.153900517007594,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0.802577647298789,0,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0.279282401272254,0,1.43574604915363,0,0,0,0.470284307407084,0,0,0,0,0,0,0,0,0.136203406111576,1.92903778158023,2.88832816854191,2.9080823662043,0,0,0,0,0,0.419636705079985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332787154610557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0.504143392443436,0,0.161475645631851,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237840181555137,2.03302947670128,0,1.50962843566674,0,0,0,0.245148321753905,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0.730336388246517,0,0,0,0,0.872701380680755,0.5290268405154,0,0,0,0,0.109265571963696,0,0.713921808193872,0.26721740526556,2.94063678511504,0,0.0757786982182394,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,23.0371250169058,0,0,0,0,0.366724332548599,0.813792356631477,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.684372125364421,1.25542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472674085820339,0.665188192387692,0.43917392846563,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0,0,0,0,0,1.06748995729705,0,0,0.134710672069688,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,1.45782745153634,0.464775771478074,0.725627385107593,0.756962552626885,2.18986415445498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0,0.200506470303285,0,0,0,0,0,0.0770153371044148,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0.15350367472613,0.137836572484531,0,0,0,0,0.165284915360978,0,0.382838137483752,0.10115778085555,0,0,0,0.616067160352178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.153900517007594,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0.802577647298789,0,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0.279282401272254,0,1.43574604915363,0,0,0,0.470284307407084,0,0,0,0,0,0,0,0,0.136203406111576,1.92903778158023,2.88832816854191,2.9080823662043,0,0,0,0,0,0.419636705079985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332787154610557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0.504143392443436,0,0.161475645631851,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237840181555137,2.03302947670128,0,1.50962843566674,0,0,0,0.245148321753905,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0.730336388246517,0,0,0,0,0.872701380680755,0.5290268405154,0,0,0,0,0.109265571963696,0,0.713921808193872,0.26721740526556,2.94063678511504,0,0.0757786982182394,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,23.0371250169058,0,0,0,0,0.366724332548599,0.813792356631477,0,0,0 | ||
|short_description=p8@LINC00340 | |short_description=p8@LINC00340 | ||
}} | }} |
Latest revision as of 04:04, 17 September 2015
Short description: | p8@LINC00340 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LINC00340_5end |
Coexpression cluster: | C724_transitionalcell_parietal_occipital_duodenum_temporal_non_CD34 |
Association with transcript: | -490bp_to_AK300802_5end |
EntrezGene: | LINC00340 |
HGNC: | 28245 |
UniProt: | B4DUU8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 9.87e-24 | 6 |
neuroblast | 9.87e-24 | 6 |
electrically signaling cell | 9.87e-24 | 6 |
neuronal stem cell | 5.58e-18 | 8 |
bladder cell | 4.72e-17 | 1 |
lower urinary tract cell | 4.72e-17 | 1 |
neural cell | 2.20e-09 | 25 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 4.72e-17 | 1 |
wall of urinary bladder | 4.72e-17 | 1 |
mucosa of urinary bladder | 4.72e-17 | 1 |
tricuspid valve | 2.25e-16 | 1 |
right atrium valve | 2.25e-16 | 1 |
outflow tract of atrium | 2.25e-16 | 1 |
outflow part of right atrium | 2.25e-16 | 1 |
right cardiac atrium | 2.25e-16 | 1 |
urinary bladder | 3.43e-09 | 2 |
lower urinary tract | 3.43e-09 | 2 |
cardiac atrium | 7.49e-09 | 2 |
atrioventricular valve | 7.49e-09 | 2 |
future cardiac atrium | 7.49e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 3.07e-16 | 4 |
bronchus cancer | 1.09e-09 | 7 |
bronchogenic carcinoma | 1.09e-09 | 7 |
lung carcinoma | 9.85e-08 | 9 |