FFCP PHASE1:Hg19::chr6:138114040..138114043,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:138114040..138114043,+ | |||
|coexpression_cluster_id=C1351 | |||
|description=CAGE_peak_at_chr6:138114040..138114043,+ | |description=CAGE_peak_at_chr6:138114040..138114043,+ | ||
|id=chr6:138114040..138114043,+ | |id=chr6:138114040..138114043,+ | ||
|ontology_enrichment_celltype=CL:0000738!5.56e-47!140;CL:0002057!6.19e-44!42;CL:0000860!1.52e-40!45;CL:0000037!1.15e-39!172;CL:0000566!1.15e-39!172;CL:0000988!1.38e-38!182;CL:0002032!3.87e-38!165;CL:0000837!3.87e-38!165;CL:0000766!3.12e-36!76;CL:0002031!3.24e-36!124;CL:0000557!3.10e-34!71;CL:0000763!4.00e-33!112;CL:0000049!4.00e-33!112;CL:0002087!7.13e-32!119;CL:0002009!1.63e-30!65;CL:0000839!1.42e-29!70;CL:0002194!1.79e-26!63;CL:0000576!1.79e-26!63;CL:0000040!1.79e-26!63;CL:0000559!1.79e-26!63;CL:0000134!1.08e-13!358;CL:0002320!3.36e-13!365;CL:0000219!1.83e-11!390;CL:0000453!2.97e-11!5;CL:0000034!6.75e-11!444;CL:0000767!1.18e-10!3;CL:0000048!4.06e-10!430;CL:0000723!8.23e-10!436;CL:0000084!1.62e-08!25;CL:0000827!1.62e-08!25;CL:0001014!2.34e-08!2;CL:0001016!2.34e-08!2;CL:0000791!1.25e-07!18;CL:0000789!1.25e-07!18;CL:0002420!1.25e-07!18;CL:0002419!1.25e-07!18;CL:0000790!1.25e-07!18;CL:0000081!2.57e-07!11;CL:0000094!6.71e-07!8 | |ontology_enrichment_celltype=CL:0000738!5.56e-47!140;CL:0002057!6.19e-44!42;CL:0000860!1.52e-40!45;CL:0000037!1.15e-39!172;CL:0000566!1.15e-39!172;CL:0000988!1.38e-38!182;CL:0002032!3.87e-38!165;CL:0000837!3.87e-38!165;CL:0000766!3.12e-36!76;CL:0002031!3.24e-36!124;CL:0000557!3.10e-34!71;CL:0000763!4.00e-33!112;CL:0000049!4.00e-33!112;CL:0002087!7.13e-32!119;CL:0002009!1.63e-30!65;CL:0000839!1.42e-29!70;CL:0002194!1.79e-26!63;CL:0000576!1.79e-26!63;CL:0000040!1.79e-26!63;CL:0000559!1.79e-26!63;CL:0000134!1.08e-13!358;CL:0002320!3.36e-13!365;CL:0000219!1.83e-11!390;CL:0000453!2.97e-11!5;CL:0000034!6.75e-11!444;CL:0000767!1.18e-10!3;CL:0000048!4.06e-10!430;CL:0000723!8.23e-10!436;CL:0000084!1.62e-08!25;CL:0000827!1.62e-08!25;CL:0001014!2.34e-08!2;CL:0001016!2.34e-08!2;CL:0000791!1.25e-07!18;CL:0000789!1.25e-07!18;CL:0002420!1.25e-07!18;CL:0002419!1.25e-07!18;CL:0000790!1.25e-07!18;CL:0000081!2.57e-07!11;CL:0000094!6.71e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.05e-33;33!CL:0002057;2.05e-33;33!CL:0000473;1.36e-24;39!CL:0000234;1.36e-24;39!CL:0000576;2.33e-21;48!CL:0000766;1.34e-18;69!CL:0001014;4.53e-17;2!CL:0001016;4.53e-17;2!CL:0002393;3.40e-12;6!CL:0002397;3.40e-12;6!CL:0002087;5.77e-08;104!CL:0000763;8.59e-08;100!CL:0000453;2.38e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.34e-44,42;CL:0002057,5.34e-44,42;CL:0000473,3.83e-38,48;CL:0000234,3.83e-38,48;CL:0002009,3.57e-37,61;CL:0000557,1.30e-33,67;CL:0000766,6.71e-31,72;CL:0002194,6.12e-30,59;CL:0000576,6.12e-30,59;CL:0000040,6.12e-30,59;CL:0000559,6.12e-30,59;CL:0000839,1.65e-26,66;CL:0000763,7.66e-25,108;CL:0000049,7.66e-25,108;CL:0000738,2.82e-21,136;CL:0002031,1.03e-19,120;CL:0002032,2.02e-17,161;CL:0000837,2.02e-17,161;CL:0001014,4.19e-17,2;CL:0001016,4.19e-17,2;CL:0000037,1.52e-16,168;CL:0002087,4.05e-16,115;CL:0000988,1.61e-15,177;CL:0002393,3.06e-08,9;CL:0002397,3.06e-08,9;CL:0000453,2.31e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;9.50e-35;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.56e-29!80;UBERON:0001474!6.09e-27!86;UBERON:0002390!1.03e-26!102;UBERON:0003061!1.03e-26!102;UBERON:0002193!1.38e-23!112;UBERON:0004765!1.81e-23!101;UBERON:0001434!1.81e-23!101;UBERON:0002405!3.13e-18!115;UBERON:0002384!1.58e-12!375;UBERON:0002204!3.72e-11!167;UBERON:0003081!2.26e-08!216 | |ontology_enrichment_uberon=UBERON:0002371!1.56e-29!80;UBERON:0001474!6.09e-27!86;UBERON:0002390!1.03e-26!102;UBERON:0003061!1.03e-26!102;UBERON:0002193!1.38e-23!112;UBERON:0004765!1.81e-23!101;UBERON:0001434!1.81e-23!101;UBERON:0002405!3.13e-18!115;UBERON:0002384!1.58e-12!375;UBERON:0002204!3.72e-11!167;UBERON:0003081!2.26e-08!216 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.64e-29,76;UBERON:0001474,5.94e-27,82;UBERON:0004765,2.69e-24,90;UBERON:0002405,2.04e-23,93;UBERON:0002390,4.54e-22,98;UBERON:0003061,4.54e-22,98;UBERON:0001434,1.44e-21,100;UBERON:0002193,9.62e-20,108;UBERON:0002204,1.21e-11,167;UBERON:0003081,5.34e-09,203 | |||
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| ||
|short_description=p@chr6:138114040..138114043,+ | |short_description=p@chr6:138114040..138114043,+ | ||
}} | }} |
Latest revision as of 20:00, 30 July 2015
Short description: | p@chr6:138114040..138114043, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:138114040..138114043, + |
Coexpression cluster: | C1351_immature_CD14_CD34_Peripheral_Mast_Basophils_Natural |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.34e-44 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.34e-44 | 42 |
defensive cell | 3.83e-38 | 48 |
phagocyte | 3.83e-38 | 48 |
macrophage dendritic cell progenitor | 3.57e-37 | 61 |
granulocyte monocyte progenitor cell | 1.30e-33 | 67 |
myeloid leukocyte | 6.71e-31 | 72 |
monopoietic cell | 6.12e-30 | 59 |
monocyte | 6.12e-30 | 59 |
monoblast | 6.12e-30 | 59 |
promonocyte | 6.12e-30 | 59 |
myeloid lineage restricted progenitor cell | 1.65e-26 | 66 |
myeloid cell | 7.66e-25 | 108 |
common myeloid progenitor | 7.66e-25 | 108 |
leukocyte | 2.82e-21 | 136 |
hematopoietic lineage restricted progenitor cell | 1.03e-19 | 120 |
hematopoietic oligopotent progenitor cell | 2.02e-17 | 161 |
hematopoietic multipotent progenitor cell | 2.02e-17 | 161 |
CD1a-positive Langerhans cell | 4.19e-17 | 2 |
immature CD1a-positive Langerhans cell | 4.19e-17 | 2 |
hematopoietic stem cell | 1.52e-16 | 168 |
nongranular leukocyte | 4.05e-16 | 115 |
hematopoietic cell | 1.61e-15 | 177 |
intermediate monocyte | 3.06e-08 | 9 |
CD14-positive, CD16-positive monocyte | 3.06e-08 | 9 |
Langerhans cell | 2.31e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.64e-29 | 76 |
bone element | 5.94e-27 | 82 |
skeletal element | 2.69e-24 | 90 |
immune system | 2.04e-23 | 93 |
hematopoietic system | 4.54e-22 | 98 |
blood island | 4.54e-22 | 98 |
skeletal system | 1.44e-21 | 100 |
hemolymphoid system | 9.62e-20 | 108 |
musculoskeletal system | 1.21e-11 | 167 |
lateral plate mesoderm | 5.34e-09 | 203 |