FFCP PHASE1:Hg19::chr4:15920326..15920338,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:15920326..15920338,+ | |||
|coexpression_cluster_id=C4384 | |||
|description=CAGE_peak_at_chr4:15920326..15920338,+ | |description=CAGE_peak_at_chr4:15920326..15920338,+ | ||
|id=chr4:15920326..15920338,+ | |id=chr4:15920326..15920338,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.09e-22!254;CL:0002076!2.60e-21!43;CL:0000223!3.67e-16!59;CL:0002159!2.81e-12!13;CL:0000076!4.83e-12!62;CL:0002368!6.13e-12!13;CL:0002621!9.10e-12!3;CL:0002251!1.03e-11!21;CL:0000240!1.15e-09!6;CL:0000311!1.15e-09!6;CL:0000079!1.15e-09!6;CL:0000237!1.15e-09!6;CL:0000036!1.15e-09!6;CL:0000357!1.15e-09!6;CL:0000114!1.15e-09!6;CL:0000575!5.59e-08!2;CL:0000220!1.85e-07!246;CL:0002321!2.44e-07!248;CL:0000312!4.99e-07!5;CL:0002077!9.08e-07!33 | |ontology_enrichment_celltype=CL:0000066!2.09e-22!254;CL:0002076!2.60e-21!43;CL:0000223!3.67e-16!59;CL:0002159!2.81e-12!13;CL:0000076!4.83e-12!62;CL:0002368!6.13e-12!13;CL:0002621!9.10e-12!3;CL:0002251!1.03e-11!21;CL:0000240!1.15e-09!6;CL:0000311!1.15e-09!6;CL:0000079!1.15e-09!6;CL:0000237!1.15e-09!6;CL:0000036!1.15e-09!6;CL:0000357!1.15e-09!6;CL:0000114!1.15e-09!6;CL:0000575!5.59e-08!2;CL:0000220!1.85e-07!246;CL:0002321!2.44e-07!248;CL:0000312!4.99e-07!5;CL:0002077!9.08e-07!33 | ||
|ontology_enrichment_celltype_v019=CL:0002621;7.98e-40;3!CL:0002159;2.18e-15;14!CL:0000312;1.31e-11;5!CL:0002076;3.24e-11;42!CL:0002251;6.92e-11;20!CL:0000240;7.93e-10;6!CL:0000311;7.93e-10;6!CL:0000079;7.93e-10;6!CL:0000237;7.93e-10;6!CL:0000575;6.80e-08;2!CL:0000362;7.75e-07;9!CL:0002202;9.10e-07;9!CL:0002632;9.10e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,4.38e-40,3;CL:0002159,2.31e-15,14;CL:0002076,6.27e-15,42;CL:0000312,1.42e-11,5;CL:0002251,6.24e-11,20;CL:0000223,1.15e-10,58;CL:0000066,3.03e-10,253;CL:0000240,8.48e-10,6;CL:0000311,8.48e-10,6;CL:0000079,8.48e-10,6;CL:0000237,8.48e-10,6;CL:0000036,8.48e-10,6;CL:0000357,8.48e-10,6;CL:0000114,8.48e-10,6;CL:0000575,5.74e-08,2;CL:0000076,2.47e-07,63;CL:0000362,8.10e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000357;7.93e-10;6!CL:0000114;7.93e-10;6 | |||
|ontology_enrichment_disease=DOID:1749!6.00e-19!14;DOID:305!6.15e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:3111;7.12e-15;1!DOID:3603;7.12e-15;1!DOID:1749;2.91e-09;14!DOID:3910;6.80e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,7.13e-15,1;DOID:3603,7.13e-15,1;DOID:1749,2.83e-09,14;DOID:3910,9.19e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0001949!9.10e-12!3;UBERON:0003729!2.00e-11!5;UBERON:0001004!8.51e-11!72;UBERON:0000166!2.18e-09!21;UBERON:0003343!1.55e-08!4;UBERON:0004785!1.55e-08!4;UBERON:0000165!1.92e-08!28;UBERON:0000930!1.92e-08!28;UBERON:0004119!2.67e-08!169;UBERON:0000925!2.67e-08!169;UBERON:0006595!2.67e-08!169;UBERON:0000974!3.65e-08!10;UBERON:0002394!6.72e-08!4;UBERON:0003928!6.72e-08!4;UBERON:0000161!8.58e-08!35;UBERON:0001444!9.32e-08!48;UBERON:0002294!1.46e-07!7;UBERON:0001173!1.46e-07!7;UBERON:0004912!1.46e-07!7;UBERON:0000344!3.78e-07!12;UBERON:0000058!4.06e-07!26;UBERON:0001007!4.29e-07!155;UBERON:0001555!4.29e-07!155;UBERON:0007026!4.29e-07!155 | |ontology_enrichment_uberon=UBERON:0001949!9.10e-12!3;UBERON:0003729!2.00e-11!5;UBERON:0001004!8.51e-11!72;UBERON:0000166!2.18e-09!21;UBERON:0003343!1.55e-08!4;UBERON:0004785!1.55e-08!4;UBERON:0000165!1.92e-08!28;UBERON:0000930!1.92e-08!28;UBERON:0004119!2.67e-08!169;UBERON:0000925!2.67e-08!169;UBERON:0006595!2.67e-08!169;UBERON:0000974!3.65e-08!10;UBERON:0002394!6.72e-08!4;UBERON:0003928!6.72e-08!4;UBERON:0000161!8.58e-08!35;UBERON:0001444!9.32e-08!48;UBERON:0002294!1.46e-07!7;UBERON:0001173!1.46e-07!7;UBERON:0004912!1.46e-07!7;UBERON:0000344!3.78e-07!12;UBERON:0000058!4.06e-07!26;UBERON:0001007!4.29e-07!155;UBERON:0001555!4.29e-07!155;UBERON:0007026!4.29e-07!155 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;7.98e-40;3!UBERON:0003929;1.69e-17;7!UBERON:0000344;1.32e-16;20!UBERON:0003729;1.37e-16;13!UBERON:0003350;2.15e-15;8!UBERON:0001828;2.15e-15;8!UBERON:0000997;1.72e-14;1!UBERON:0005056;1.72e-14;1!UBERON:0004176;1.72e-14;1!UBERON:0000161;1.91e-11;19!UBERON:0000166;1.91e-11;19!UBERON:0010371;1.28e-10;31!UBERON:0000486;1.82e-10;12!UBERON:0004807;7.73e-10;22!UBERON:0004903;6.80e-08;2!UBERON:0002173;6.80e-08;2!UBERON:0002186;6.80e-08;2!UBERON:0000165;7.69e-08;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,4.38e-40,3;UBERON:0000344,1.16e-16,20;UBERON:0003729,1.16e-16,13;UBERON:0003350,1.72e-15,8;UBERON:0001828,1.72e-15,8;UBERON:0000997,1.41e-14,1;UBERON:0005056,1.41e-14,1;UBERON:0000166,5.84e-10,22;UBERON:0000033,3.21e-08,56;UBERON:0003102,8.57e-08,99;UBERON:0004807,8.89e-08,28;UBERON:0004903,9.19e-08,2;UBERON:0002173,9.19e-08,2;UBERON:0002186,9.19e-08,2;UBERON:0000165,1.32e-07,29;UBERON:0000930,1.32e-07,29;UBERON:0000153,2.17e-07,62;UBERON:0007811,2.17e-07,62;UBERON:0001444,9.54e-07,49 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323745888736263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93260853163297,1.09098448236334,1.72082757233402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548751427043128,2.24803506515239,1.3068766413512,0.462942225792648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,1.27597587518148,0,0.871901815541886,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399891964728228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184161977871793,0,0,0,1.35359883872224,0.462092022626489,0,0,0,0,0,0,0,0,0,0.764628819135115,0.831076008928724,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0.893288987462089,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,1.34060455107157,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.898683511473268,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,1.01701460117107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782658475728359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37189356380129,0.870592065804026,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0.214821114084977,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.16968185037941,0,0,0,0,0,0,0.622077260032973,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235939446695481,5.68628655417205,0.924205329202706,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0.430227358820278,0,0,0,5.72767171360125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535661815816973,6.35210769088245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0.0620747142958579,0.112131862580613,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr4:15920326..15920338,+ | |short_description=p@chr4:15920326..15920338,+ | ||
}} | }} |
Latest revision as of 02:47, 30 July 2015
Short description: | p@chr4:15920326..15920338, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:15920326..15920338, + |
Coexpression cluster: | C4384_squamous_oral_serous_Corneal_Gingival_bronchioalveolar_Keratinocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 4.38e-40 | 3 |
general ecto-epithelial cell | 2.31e-15 | 14 |
endo-epithelial cell | 6.27e-15 | 42 |
keratinocyte | 1.42e-11 | 5 |
epithelial cell of alimentary canal | 6.24e-11 | 20 |
endodermal cell | 1.15e-10 | 58 |
epithelial cell | 3.03e-10 | 253 |
stratified squamous epithelial cell | 8.48e-10 | 6 |
keratin accumulating cell | 8.48e-10 | 6 |
stratified epithelial cell | 8.48e-10 | 6 |
keratinizing barrier epithelial cell | 8.48e-10 | 6 |
epithelial fate stem cell | 8.48e-10 | 6 |
stratified epithelial stem cell | 8.48e-10 | 6 |
surface ectodermal cell | 8.48e-10 | 6 |
corneal epithelial cell | 5.74e-08 | 2 |
squamous epithelial cell | 2.47e-07 | 63 |
epidermal cell | 8.10e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 4.38e-40 | 3 |
mucosa | 1.16e-16 | 20 |
mouth mucosa | 1.16e-16 | 13 |
epithelium of mucosa | 1.72e-15 | 8 |
gingiva | 1.72e-15 | 8 |
mammalian vulva | 1.41e-14 | 1 |
external female genitalia | 1.41e-14 | 1 |
oral opening | 5.84e-10 | 22 |
head | 3.21e-08 | 56 |
surface structure | 8.57e-08 | 99 |
respiratory system epithelium | 8.89e-08 | 28 |
bronchoalveolar duct junction | 9.19e-08 | 2 |
alveolar duct | 9.19e-08 | 2 |
bronchiole | 9.19e-08 | 2 |
mouth | 1.32e-07 | 29 |
stomodeum | 1.32e-07 | 29 |
anterior region of body | 2.17e-07 | 62 |
craniocervical region | 2.17e-07 | 62 |
subdivision of head | 9.54e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 7.13e-15 | 1 |
mucinous cystadenocarcinoma | 7.13e-15 | 1 |
squamous cell carcinoma | 2.83e-09 | 14 |
lung adenocarcinoma | 9.19e-08 | 2 |