FFCP PHASE1:Hg19::chr15:23932389..23932401,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:23932389..23932401,-
|short_description=p3@NDN
|description=CAGE_peak_3_at_NDN_5end
|association_with_transcript=48bp_to_ENST00000331837,NM_002487,uc001yw...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4692 | |EntrezGene=4692 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7675 | |HGNC=7675 | ||
|TSSclassifier=strong | |||
|UniProt=Q99608 | |UniProt=Q99608 | ||
|association_with_transcript=48bp_to_ENST00000331837,NM_002487,uc001ywk.2_5end | |||
|cluster_id=chr15:23932389..23932401,- | |||
|coexpression_cluster_id=C3475 | |||
|description=CAGE_peak_3_at_NDN_5end | |||
|id=chr15:23932389..23932401,- | |||
|ontology_enrichment_celltype=CL:0000055!2.75e-17!180;CL:0000136!7.12e-10!15;CL:0000222!3.23e-09!119;CL:0000057!7.74e-09!75;CL:0000393!1.40e-08!60;CL:0000211!1.40e-08!60;CL:0000183!2.40e-08!59;CL:0000680!1.41e-07!57;CL:0000056!1.41e-07!57;CL:0000355!1.41e-07!57;CL:0000187!3.24e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0000136;8.93e-11;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,7.92e-11,15;CL:0000222,1.95e-08,121;CL:0000393,4.08e-08,61;CL:0000211,4.08e-08,61;CL:0000057,1.88e-07,76;CL:0000680,4.52e-07,58;CL:0000056,4.52e-07,58;CL:0000355,4.52e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.83e-14!365;UBERON:0003075!8.99e-13!86;UBERON:0007284!8.99e-13!86;UBERON:0000119!1.10e-12!312;UBERON:0000483!4.23e-12!309;UBERON:0000468!1.27e-11!659;UBERON:0002346!1.73e-11!90;UBERON:0003056!9.03e-10!61;UBERON:0000025!1.87e-09!194;UBERON:0005743!2.04e-09!86;UBERON:0000481!2.41e-09!347;UBERON:0000033!2.49e-09!123;UBERON:0000477!4.21e-09!286;UBERON:0000153!5.21e-09!129;UBERON:0007811!5.21e-09!129;UBERON:0004111!5.70e-09!241;UBERON:0007023!7.97e-09!115;UBERON:0000467!1.61e-08!625;UBERON:0001017!1.93e-08!82;UBERON:0002049!2.27e-08!79;UBERON:0007798!2.27e-08!79;UBERON:0000073!2.29e-08!94;UBERON:0001016!2.29e-08!94;UBERON:0000480!2.45e-08!626;UBERON:0002385!3.18e-08!63;UBERON:0001015!3.18e-08!63;UBERON:0000383!3.18e-08!63;UBERON:0004121!4.93e-08!169;UBERON:0001134!5.95e-08!61;UBERON:0002036!5.95e-08!61;UBERON:0003082!5.95e-08!61;UBERON:0000914!7.35e-08!83;UBERON:0002329!7.35e-08!83;UBERON:0003077!7.35e-08!83;UBERON:0003059!7.35e-08!83;UBERON:0007282!7.35e-08!83;UBERON:0009618!7.35e-08!83;UBERON:0007285!7.35e-08!83;UBERON:0004872!1.04e-07!84;UBERON:0001013!1.30e-07!14;UBERON:0000064!1.46e-07!219;UBERON:0000924!2.02e-07!173;UBERON:0006601!2.02e-07!173;UBERON:0001049!3.39e-07!57;UBERON:0005068!3.39e-07!57;UBERON:0006241!3.39e-07!57;UBERON:0007135!3.39e-07!57;UBERON:0002616!6.53e-07!59;UBERON:0005256!6.73e-07!143;UBERON:0000922!7.94e-07!612;UBERON:0002104!9.22e-07!21;UBERON:0004290!9.79e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;4.05e-08;14!UBERON:0002104;5.79e-07;21!UBERON:0001032;6.41e-07;24!UBERON:0004456;6.41e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,4.33e-12,132;UBERON:0003075,4.43e-12,82;UBERON:0007284,4.43e-12,82;UBERON:0000119,5.29e-11,309;UBERON:0002346,1.57e-10,86;UBERON:0000483,1.99e-10,306;UBERON:0001013,2.62e-08,14;UBERON:0003056,3.03e-08,61;UBERON:0000025,1.22e-07,192;UBERON:0001017,1.33e-07,81;UBERON:0002385,1.37e-07,64;UBERON:0001015,1.37e-07,64;UBERON:0000383,1.37e-07,64;UBERON:0002049,1.80e-07,78;UBERON:0007798,1.80e-07,78;UBERON:0007503,2.61e-07,78;UBERON:0001134,2.69e-07,62;UBERON:0002036,2.69e-07,62;UBERON:0003082,2.69e-07,62;UBERON:0004872,2.79e-07,83;UBERON:0007023,5.39e-07,114;UBERON:0010371,5.62e-07,104;UBERON:0000020,6.23e-07,24;UBERON:0001032,6.23e-07,24;UBERON:0004456,6.23e-07,24;UBERON:0000970,7.15e-07,21;UBERON:0002104,7.15e-07,21;UBERON:0001456,9.16e-07,22 | |||
|phase1_expression=9.08391896352783,6.85121676451146,9.58489947852604,4.00293193412522,11.6209884551095,9.59572376510406,7.59899634504932,5.68547886084148,14.1040239227913,5.89761447603621,13.2582221914761,3.27662058195258,4.22027165165526,2.22779435328084,2.31978163009541,0.672325146451775,0.602694528023977,0.730310090387373,1.46379839637152,5.66356867153224,7.95602695852587,4.38836610069323,2.0036519099174,3.55873505189499,1.88313959392204,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0.587200878669695,0,0,0,0.223915474239924,0.32389366601898,0.515151135268373,0,0.377875943688809,0,0.464858073811369,0,0,0.28769239232215,0,0.236482229888585,0,0,0,0,0.272906150057846,0,0,0.320929027076094,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0.855038231223746,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,1.58030450865046,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0,0.657751618414705,0.552700035571697,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,2.43806866313962,2.68280343881454,4.09160197899297,3.61439152384566,2.00535164254356,8.5459446186886,2.3858578411533,2.43317435151318,4.53767122387526,5.09977614163897,3.95256535619067,2.48860243445654,0.364295288292542,0.370784442784429,1.9472843619281,1.39303789839414,0.398873881556595,0,0.571994910780128,0,0.993812036833525,2.58070378531837,0.694281003215189,5.08777147731609,0,3.57653454522088,1.67195973229448,0.258416759169329,2.84613010149368,0.33472061276467,4.02829317109147,2.28081631715554,3.41686880567437,0,0,1.07159673940896,1.34717623575702,1.57656072676651,0,8.54339093611316,1.46561395144326,0,0,0,2.98183171017191,3.54565432660823,1.58891016975863,1.72101972449288,2.12801029319014,1.12135520028461,3.20246987189115,1.97334038733728,4.66816553099649,1.61652806483626,1.30769522490767,5.44886739521753,4.60940739583999,2.57753575017176,0.312160076830321,0.570471821544449,0.149448680551801,1.05691048779388,1.78060238804945,1.12360645361799,0.204154171254893,1.71968044236475,0.723280468230358,2.37600571456411,0,5.46096817162816,2.87447256726495,1.85169725349473,1.7516592782075,0.554128230968366,2.19488810440419,0.919463387397059,0.901428353439581,3.97012641060074,1.79389635688862,1.70845911054854,3.81477422087211,3.00091096084402,1.8549455262919,1.54584324027377,3.16398655763703,1.5189869901714,4.67697624773753,3.28163906517349,4.32634523618807,3.71785930683267,0.710019185033229,2.01504196455281,5.08681776931463,0.57978255948989,0.818238361772504,0,0.365921118388786,1.19276791489337,1.97529702878181,3.10983165046111,1.26160425437814,2.91981887260664,0,1.28648187638577,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,5.90524363699719,2.80483547606892,10.7009242946164,5.88034845542168,0,0,0,0,0,4.28919525746314,0,0,0,1.20364978706088,3.58389135841357,3.11980435583874,4.3299402607582,4.05756417412769,3.05262605013136,2.02113026865503,1.85194205030644,1.90254152234598,0,0,0.738651018262192,0.702012795417713,0.148631162288728,3.74935335947108,3.86358894857377,0.850650583454319,0,0,0,0,0,0.414656231081544,0.288239906833923,0.25248486685276,1.20645999155121,3.05590740446622,0,3.4214489204541,0.205654985406647,0,0,3.7003257833969,3.05172048183296,2.27348686044945,6.46358578788889,14.3062578340753,3.381211010224,1.32969058292435,0,3.34369586540785,0,2.1313774321288,2.28764789853036,21.7048642156577,5.76268235746538,2.93162565864362,0.710783897485092,0.791951872933429,5.72734816413214,3.48613383440118,3.59902768255405,0,0.502257091432126,0,0.718874566474748,0,0,3.04040744001916,2.26023954805422,1.43248770591916,0,0,0,0,4.57370323600434,5.20559415430487,5.41302168944387,4.18790663335872,1.91381625495949,0,0,0,3.0672872929785,1.00034104211935,1.62759014219841,3.32753378449291,1.60586089917446,2.20783381047509,0.937131319941706,9.63027519128701,13.6444502433591,13.4514992680256,0,3.50301420229236,1.99832313276591,2.74121620447837,4.80400793335198,0.206768026122887,0.215714200818617,0,5.75942385747893,0,6.65258645325297,7.19512642674453,3.06923946576125,4.49056151092918,5.63812256725084,5.11707249066703,4.50390979202101,4.45254199334973,2.31314540703983,6.39222211127257,2.21743321237285,0.519254429183621,2.5566283261191,0,2.6065841139427,0.644566922551274,2.52591785962135,2.1850940160806,1.18011973463482,1.35359883872224,1.69433741629712,6.27479815341484,0,1.79437769117889,5.68666920354483,2.38131187387122,0.647747748306418,13.880452742126,2.43851793789468,3.51182841698397,1.01950509218015,0.831076008928724,2.23874754722178,0,0,1.53870075069834,5.24823433119529,4.88067591996455,1.75169719801128,0,0,0.574265537996172,0.650060246036521,0,4.25351160485337,2.46477787383431,3.68408819342711,2.34322173223702,6.01553371262332,5.65565106265491,2.38634556765083,8.72513949338026,0.661139661443912,0.960950336825531,0,0.708104465988849,0,0.31481234683064,0.6970372701606,0.616067160352178,3.19383618190213,0,9.266210955196,5.72499546967965,1.116475108079,0,0.571890581771475,7.16513815671735,5.99114583247489,1.27281299170375,1.56989728039846,8.45400550641579,3.294444356832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| ||
|short_description=p3@NDN | |||
}} | }} |
Latest revision as of 23:59, 16 September 2015
Short description: | p3@NDN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NDN_5end |
Coexpression cluster: | C3475_skeletal_Mesenchymal_Alveolar_brain_Hepatic_Adipocyte_mature |
Association with transcript: | 48bp_to_ENST00000331837, NM_002487, uc001ywk.2_5end |
EntrezGene: | NDN |
HGNC: | 7675 |
UniProt: | Q99608 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 7.92e-11 | 15 |
mesodermal cell | 1.95e-08 | 121 |
electrically responsive cell | 4.08e-08 | 61 |
electrically active cell | 4.08e-08 | 61 |
fibroblast | 1.88e-07 | 76 |
muscle precursor cell | 4.52e-07 | 58 |
myoblast | 4.52e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.52e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 4.33e-12 | 132 |
neural plate | 4.43e-12 | 82 |
presumptive neural plate | 4.43e-12 | 82 |
cell layer | 5.29e-11 | 309 |
neurectoderm | 1.57e-10 | 86 |
epithelium | 1.99e-10 | 306 |
adipose tissue | 2.62e-08 | 14 |
pre-chordal neural plate | 3.03e-08 | 61 |
tube | 1.22e-07 | 192 |
central nervous system | 1.33e-07 | 81 |
muscle tissue | 1.37e-07 | 64 |
musculature | 1.37e-07 | 64 |
musculature of body | 1.37e-07 | 64 |
vasculature | 1.80e-07 | 78 |
vascular system | 1.80e-07 | 78 |
epithelial vesicle | 2.61e-07 | 78 |
skeletal muscle tissue | 2.69e-07 | 62 |
striated muscle tissue | 2.69e-07 | 62 |
myotome | 2.69e-07 | 62 |
splanchnic layer of lateral plate mesoderm | 2.79e-07 | 83 |
adult organism | 5.39e-07 | 114 |
ecto-epithelium | 5.62e-07 | 104 |
sense organ | 6.23e-07 | 24 |
sensory system | 6.23e-07 | 24 |
entire sense organ system | 6.23e-07 | 24 |
eye | 7.15e-07 | 21 |
visual system | 7.15e-07 | 21 |
face | 9.16e-07 | 22 |