FFCP PHASE1:Hg19::chr3:129375556..129375570,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23023 | |EntrezGene=23023 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29116 | |HGNC=29116 | ||
|TSSclassifier=strong | |||
|UniProt=D6RH19 | |UniProt=D6RH19 | ||
|association_with_transcript=0bp_to_ENST00000510323_5end | |association_with_transcript=0bp_to_ENST00000510323_5end | ||
|cluster_id=chr3:129375556..129375570,- | |||
|coexpression_cluster_id=C182 | |||
|description=CAGE_peak_16_at_TMCC1_5end | |description=CAGE_peak_16_at_TMCC1_5end | ||
|id=chr3:129375556..129375570,- | |id=chr3:129375556..129375570,- | ||
|ontology_enrichment_celltype=CL:0000181!3.29e-13!12;CL:0000417!3.29e-13!12;CL:0000668!3.29e-13!12;CL:0000414!3.29e-13!12;CL:0000412!3.29e-13!12;CL:0000182!3.29e-13!12;CL:0005020!4.60e-07!6;CL:0002138!4.60e-07!6;CL:0005022!4.60e-07!6;CL:0000223!6.42e-07!59 | |ontology_enrichment_celltype=CL:0000181!3.29e-13!12;CL:0000417!3.29e-13!12;CL:0000668!3.29e-13!12;CL:0000414!3.29e-13!12;CL:0000412!3.29e-13!12;CL:0000182!3.29e-13!12;CL:0005020!4.60e-07!6;CL:0002138!4.60e-07!6;CL:0005022!4.60e-07!6;CL:0000223!6.42e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.91e-12;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.86e-12,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;7.92e-35;11!UBERON:0009497;1.67e-29;13!UBERON:0003104;5.23e-24;31!UBERON:0001041;3.81e-18;30!UBERON:0003918;4.01e-07;10!UBERON:0007687;4.01e-07;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3493;3.86e-09;2!DOID:7;7.20e-09;39!DOID:4929;7.49e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:7,5.86e-10,39;DOID:3493,4.02e-09,2;DOID:4929,7.49e-09,2;DOID:305,1.23e-08,106;DOID:0050687,6.86e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0008835!4.04e-15!22;UBERON:0003894!4.04e-15!22;UBERON:0009854!2.17e-14!23;UBERON:0002107!3.32e-14!19;UBERON:0006925!3.32e-14!19;UBERON:0008836!3.32e-14!19;UBERON:0007499!4.20e-13!25;UBERON:0009497!4.20e-13!25;UBERON:0000015!4.20e-13!25;UBERON:0002423!4.20e-13!25;UBERON:0006235!4.20e-13!25;UBERON:0004161!4.20e-13!25;UBERON:0005172!8.37e-13!55;UBERON:0005173!8.37e-13!55;UBERON:0009856!1.55e-12!26;UBERON:0002417!3.09e-11!61;UBERON:0000916!3.09e-11!61;UBERON:0005057!5.17e-10!26;UBERON:0003929!2.56e-09!54;UBERON:0005177!3.11e-09!107;UBERON:0002365!3.51e-08!31;UBERON:0002330!3.51e-08!31;UBERON:0005911!1.77e-07!82;UBERON:0009569!1.98e-07!113;UBERON:0002368!4.27e-07!35 | |ontology_enrichment_uberon=UBERON:0008835!4.04e-15!22;UBERON:0003894!4.04e-15!22;UBERON:0009854!2.17e-14!23;UBERON:0002107!3.32e-14!19;UBERON:0006925!3.32e-14!19;UBERON:0008836!3.32e-14!19;UBERON:0007499!4.20e-13!25;UBERON:0009497!4.20e-13!25;UBERON:0000015!4.20e-13!25;UBERON:0002423!4.20e-13!25;UBERON:0006235!4.20e-13!25;UBERON:0004161!4.20e-13!25;UBERON:0005172!8.37e-13!55;UBERON:0005173!8.37e-13!55;UBERON:0009856!1.55e-12!26;UBERON:0002417!3.09e-11!61;UBERON:0000916!3.09e-11!61;UBERON:0005057!5.17e-10!26;UBERON:0003929!2.56e-09!54;UBERON:0005177!3.11e-09!107;UBERON:0002365!3.51e-08!31;UBERON:0002330!3.51e-08!31;UBERON:0005911!1.77e-07!82;UBERON:0009569!1.98e-07!113;UBERON:0002368!4.27e-07!35 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.08e-20;19!UBERON:0006925;3.08e-20;19!UBERON:0002423;2.10e-15;25!UBERON:0002365;1.52e-11;31!UBERON:0002330;1.52e-11;31!UBERON:0000949;3.49e-10;43!UBERON:0002368;6.63e-10;33!UBERON:0005172;1.51e-08;52!UBERON:0005173;1.51e-08;52!UBERON:0002417;5.57e-08;58!UBERON:0000916;5.57e-08;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.96e-20,19;UBERON:0006925,2.96e-20,19;UBERON:0008836,2.96e-20,19;UBERON:0008835,1.65e-17,22;UBERON:0003894,1.65e-17,22;UBERON:0009854,9.46e-17,23;UBERON:0007499,2.04e-15,25;UBERON:0009497,2.04e-15,25;UBERON:0000015,2.04e-15,25;UBERON:0002423,2.04e-15,25;UBERON:0006235,2.04e-15,25;UBERON:0004161,2.04e-15,25;UBERON:0009856,7.94e-15,26;UBERON:0005172,1.55e-13,54;UBERON:0005173,1.55e-13,54;UBERON:0002365,1.92e-12,31;UBERON:0002330,1.92e-12,31;UBERON:0002417,3.86e-12,60;UBERON:0000916,3.86e-12,60;UBERON:0000949,4.83e-12,45;UBERON:0005177,1.74e-11,101;UBERON:0002368,5.05e-11,35;UBERON:0009569,4.02e-08,112;UBERON:0003929,3.92e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,1.00416183829401,0,1.52054421143703,0,0,0,0,0,0,0,0.949265659568129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0.138674673013139,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.3330750268973,5.02736736125115,8.22323235021056,0.295282444544246,0,0,0.136203406111576,0,0,0,0,0,0,0,0.236417121897595,0.681909645754975,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07759690723973,1.32506888912221,0,0.13223260174269,1.02652102730598,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.8436227788192,0,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0.078493092850514,0,0.560544326627578,0,26.9909489023277,2.38875843943525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.04658304882978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0.215166616178029,0,0,0,0,1.07790242527904,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,1.00416183829401,0,1.52054421143703,0,0,0,0,0,0,0,0.949265659568129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0.138674673013139,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.3330750268973,5.02736736125115,8.22323235021056,0.295282444544246,0,0,0.136203406111576,0,0,0,0,0,0,0,0.236417121897595,0.681909645754975,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07759690723973,1.32506888912221,0,0.13223260174269,1.02652102730598,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.8436227788192,0,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0.078493092850514,0,0.560544326627578,0,26.9909489023277,2.38875843943525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.04658304882978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0.215166616178029,0,0,0,0,1.07790242527904,0,0,0,0,0,0 | ||
|short_description=p16@TMCC1 | |short_description=p16@TMCC1 | ||
}} | }} |
Latest revision as of 18:03, 24 September 2015
Short description: | p16@TMCC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_TMCC1_5end |
Coexpression cluster: | C182_renal_mature_mesothelioma_lung_Mammary_Adipocyte_acute |
Association with transcript: | 0bp_to_ENST00000510323_5end |
EntrezGene: | TMCC1 |
HGNC: | 29116 |
UniProt: | D6RH19 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.86e-12 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 2.96e-20 | 19 |
digestive gland | 2.96e-20 | 19 |
liver bud | 2.96e-20 | 19 |
hepatic diverticulum | 1.65e-17 | 22 |
liver primordium | 1.65e-17 | 22 |
digestive tract diverticulum | 9.46e-17 | 23 |
epithelial sac | 2.04e-15 | 25 |
epithelium of foregut-midgut junction | 2.04e-15 | 25 |
anatomical boundary | 2.04e-15 | 25 |
hepatobiliary system | 2.04e-15 | 25 |
foregut-midgut junction | 2.04e-15 | 25 |
septum transversum | 2.04e-15 | 25 |
sac | 7.94e-15 | 26 |
abdomen element | 1.55e-13 | 54 |
abdominal segment element | 1.55e-13 | 54 |
exocrine gland | 1.92e-12 | 31 |
exocrine system | 1.92e-12 | 31 |
abdominal segment of trunk | 3.86e-12 | 60 |
abdomen | 3.86e-12 | 60 |
endocrine system | 4.83e-12 | 45 |
trunk region element | 1.74e-11 | 101 |
endocrine gland | 5.05e-11 | 35 |
subdivision of trunk | 4.02e-08 | 112 |
gut epithelium | 3.92e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 5.86e-10 | 39 |
signet ring cell adenocarcinoma | 4.02e-09 | 2 |
tubular adenocarcinoma | 7.49e-09 | 2 |
carcinoma | 1.23e-08 | 106 |
cell type cancer | 6.86e-08 | 143 |