FFCP PHASE1:Hg19::chr14:62162285..62162296,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr14:62162285..62162296,+
|short_description=p3@HIF1A
|description=CAGE_peak_3_at_HIF1A_5end
|association_with_transcript=27bp_to_ENST00000337138,ENST000003949...") |
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(13 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3091 | |EntrezGene=3091 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4910 | |HGNC=4910 | ||
|TSSclassifier=strong | |||
|UniProt=Q16665,A8MYV6 | |UniProt=Q16665,A8MYV6 | ||
|association_with_transcript=27bp_to_ENST00000337138,ENST00000394997_5end | |||
|cluster_id=chr14:62162285..62162296,+ | |||
|coexpression_cluster_id=C3441 | |||
|description=CAGE_peak_3_at_HIF1A_5end | |||
|id=chr14:62162285..62162296,+ | |||
|ontology_enrichment_celltype=CL:0000012!2.38e-31!682;CL:0000548!3.48e-31!679;CL:0000004!3.48e-31!679;CL:0000255!3.48e-31!679;CL:0000144!4.04e-24!625;CL:0002371!1.17e-23!591;CL:0000003!4.97e-19!722;CL:0000048!3.06e-18!430;CL:0000723!4.80e-17!436;CL:0000860!5.52e-17!45;CL:0002057!8.09e-17!42;CL:0000055!8.21e-17!180;CL:0000034!1.37e-16!444;CL:0000063!4.64e-13!578;CL:0000766!7.71e-13!76;CL:0000680!2.11e-12!57;CL:0000056!2.11e-12!57;CL:0000355!2.11e-12!57;CL:0000187!5.24e-11!54;CL:0002194!8.05e-11!63;CL:0000576!8.05e-11!63;CL:0000040!8.05e-11!63;CL:0000559!8.05e-11!63;CL:0000057!1.67e-10!75;CL:0002009!2.22e-10!65;CL:0000557!1.53e-09!71;CL:0000183!3.92e-09!59;CL:0000393!4.89e-09!60;CL:0000211!4.89e-09!60;CL:0002320!1.29e-08!365;CL:0000839!1.47e-08!70;CL:0000134!2.91e-08!358;CL:0000192!1.26e-07!42;CL:0000514!1.26e-07!42;CL:0000359!2.84e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.53e-16;33!CL:0002057;6.53e-16;33!CL:0000473;3.24e-12;39!CL:0000234;3.24e-12;39!CL:0000576;1.16e-08;48!CL:0000766;2.42e-07;69!CL:0000359;5.24e-07;32!CL:0000187;5.62e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,1.40e-18,427;CL:0000723,2.43e-17,433;CL:0000860,6.35e-17,42;CL:0002057,6.35e-17,42;CL:0000034,8.07e-17,441;CL:0000473,1.52e-15,48;CL:0000234,1.52e-15,48;CL:0000680,1.39e-12,58;CL:0000056,1.39e-12,58;CL:0000355,1.39e-12,58;CL:0000766,3.79e-12,72;CL:0000187,3.51e-11,55;CL:0000057,6.58e-11,76;CL:0002194,3.92e-10,59;CL:0000576,3.92e-10,59;CL:0000040,3.92e-10,59;CL:0000559,3.92e-10,59;CL:0002009,1.07e-09,61;CL:0000393,4.51e-09,61;CL:0000211,4.51e-09,61;CL:0000557,7.18e-09,67;CL:0002320,7.38e-09,361;CL:0000134,1.84e-08,354;CL:0000839,5.65e-08,66;CL:0000192,8.89e-08,43;CL:0000514,8.89e-08,43;CL:0000359,2.60e-07,32 | |||
|ontology_enrichment_development_v019=CL:0002057;1.33e-12;42!CL:0000355;2.12e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!2.39e-18!167;UBERON:0000926!1.01e-15!448;UBERON:0004120!1.01e-15!448;UBERON:0006603!1.01e-15!448;UBERON:0000914!1.36e-10!83;UBERON:0002329!1.36e-10!83;UBERON:0003077!1.36e-10!83;UBERON:0003059!1.36e-10!83;UBERON:0007282!1.36e-10!83;UBERON:0009618!1.36e-10!83;UBERON:0007285!1.36e-10!83;UBERON:0000468!1.48e-10!659;UBERON:0000486!3.18e-10!82;UBERON:0000467!5.70e-10!625;UBERON:0003081!7.41e-10!216;UBERON:0000480!8.43e-10!626;UBERON:0004290!9.23e-10!70;UBERON:0002371!9.61e-10!80;UBERON:0005256!1.04e-09!143;UBERON:0001134!1.50e-09!61;UBERON:0002036!1.50e-09!61;UBERON:0003082!1.50e-09!61;UBERON:0004765!2.37e-09!101;UBERON:0001434!2.37e-09!101;UBERON:0002384!6.03e-09!375;UBERON:0001474!9.41e-09!86;UBERON:0002385!1.52e-08!63;UBERON:0001015!1.52e-08!63;UBERON:0000383!1.52e-08!63;UBERON:0002405!3.85e-08!115;UBERON:0002100!1.18e-07!216;UBERON:0000490!4.18e-07!138;UBERON:0000923!4.62e-07!604;UBERON:0005291!4.62e-07!604;UBERON:0006598!4.62e-07!604;UBERON:0002532!4.62e-07!604;UBERON:0002050!6.34e-07!605;UBERON:0005423!6.34e-07!605 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,2.58e-18,167;UBERON:0000926,6.52e-15,315;UBERON:0004120,6.52e-15,315;UBERON:0006603,6.52e-15,315;UBERON:0000486,1.69e-10,83;UBERON:0002329,4.85e-10,71;UBERON:0003059,4.85e-10,71;UBERON:0007282,4.85e-10,71;UBERON:0004290,4.85e-10,71;UBERON:0009618,4.85e-10,71;UBERON:0001134,7.85e-10,62;UBERON:0002036,7.85e-10,62;UBERON:0003082,7.85e-10,62;UBERON:0004765,1.76e-09,90;UBERON:0003077,1.79e-09,72;UBERON:0007285,1.79e-09,72;UBERON:0007524,2.08e-09,73;UBERON:0002384,3.91e-09,371;UBERON:0001434,4.37e-09,100;UBERON:0002371,4.54e-09,76;UBERON:0003081,5.13e-09,203;UBERON:0005256,7.16e-09,122;UBERON:0007503,7.54e-09,78;UBERON:0002385,8.42e-09,64;UBERON:0001015,8.42e-09,64;UBERON:0000383,8.42e-09,64;UBERON:0001474,3.83e-08,82;UBERON:0000490,9.06e-08,148;UBERON:0003104,2.84e-07,160;UBERON:0009142,2.84e-07,160;UBERON:0002405,4.18e-07,93;UBERON:0002100,8.73e-07,199 | |||
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| ||
|short_description=p3@HIF1A | |||
}} | }} |
Latest revision as of 23:19, 24 September 2015
Short description: | p3@HIF1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HIF1A_5end |
Coexpression cluster: | C3441_Eosinophils_Mast_Neutrophils_Preadipocyte_CD14_Fibroblast_Smooth |
Association with transcript: | 27bp_to_ENST00000337138, ENST00000394997_5end |
EntrezGene: | HIF1A |
HGNC: | 4910 |
UniProt: | Q16665A8MYV6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 1.40e-18 | 427 |
somatic stem cell | 2.43e-17 | 433 |
classical monocyte | 6.35e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.35e-17 | 42 |
stem cell | 8.07e-17 | 441 |
defensive cell | 1.52e-15 | 48 |
phagocyte | 1.52e-15 | 48 |
muscle precursor cell | 1.39e-12 | 58 |
myoblast | 1.39e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.39e-12 | 58 |
myeloid leukocyte | 3.79e-12 | 72 |
muscle cell | 3.51e-11 | 55 |
fibroblast | 6.58e-11 | 76 |
monopoietic cell | 3.92e-10 | 59 |
monocyte | 3.92e-10 | 59 |
monoblast | 3.92e-10 | 59 |
promonocyte | 3.92e-10 | 59 |
macrophage dendritic cell progenitor | 1.07e-09 | 61 |
electrically responsive cell | 4.51e-09 | 61 |
electrically active cell | 4.51e-09 | 61 |
granulocyte monocyte progenitor cell | 7.18e-09 | 67 |
connective tissue cell | 7.38e-09 | 361 |
mesenchymal cell | 1.84e-08 | 354 |
myeloid lineage restricted progenitor cell | 5.65e-08 | 66 |
smooth muscle cell | 8.89e-08 | 43 |
smooth muscle myoblast | 8.89e-08 | 43 |
vascular associated smooth muscle cell | 2.60e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 2.58e-18 | 167 |
mesoderm | 6.52e-15 | 315 |
mesoderm-derived structure | 6.52e-15 | 315 |
presumptive mesoderm | 6.52e-15 | 315 |
multilaminar epithelium | 1.69e-10 | 83 |
somite | 4.85e-10 | 71 |
presomitic mesoderm | 4.85e-10 | 71 |
presumptive segmental plate | 4.85e-10 | 71 |
dermomyotome | 4.85e-10 | 71 |
trunk paraxial mesoderm | 4.85e-10 | 71 |
skeletal muscle tissue | 7.85e-10 | 62 |
striated muscle tissue | 7.85e-10 | 62 |
myotome | 7.85e-10 | 62 |
skeletal element | 1.76e-09 | 90 |
paraxial mesoderm | 1.79e-09 | 72 |
presumptive paraxial mesoderm | 1.79e-09 | 72 |
dense mesenchyme tissue | 2.08e-09 | 73 |
connective tissue | 3.91e-09 | 371 |
skeletal system | 4.37e-09 | 100 |
bone marrow | 4.54e-09 | 76 |
lateral plate mesoderm | 5.13e-09 | 203 |
trunk mesenchyme | 7.16e-09 | 122 |
epithelial vesicle | 7.54e-09 | 78 |
muscle tissue | 8.42e-09 | 64 |
musculature | 8.42e-09 | 64 |
musculature of body | 8.42e-09 | 64 |
bone element | 3.83e-08 | 82 |
unilaminar epithelium | 9.06e-08 | 148 |
mesenchyme | 2.84e-07 | 160 |
entire embryonic mesenchyme | 2.84e-07 | 160 |
immune system | 4.18e-07 | 93 |
trunk | 8.73e-07 | 199 |