FFCP PHASE1:Hg19::chr14:61447901..61447926,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr14:61447901..61447926,+
|short_description=p3@SLC38A6
|description=CAGE_peak_3_at_SLC38A6_5end
|association_with_transcript=-17bp_to_ENST00000525723,uc001xfj...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=145389 | |EntrezGene=145389 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19863 | |HGNC=19863 | ||
|TSSclassifier=strong | |||
|UniProt=E9PM79 | |UniProt=E9PM79 | ||
|association_with_transcript=-17bp_to_ENST00000525723,uc001xfj.1,uc001xfk.2_5end | |||
|cluster_id=chr14:61447901..61447926,+ | |||
|coexpression_cluster_id=C3438 | |||
|description=CAGE_peak_3_at_SLC38A6_5end | |||
|id=chr14:61447901..61447926,+ | |||
|ontology_enrichment_celltype=CL:0002194!1.61e-20!63;CL:0000576!1.61e-20!63;CL:0000040!1.61e-20!63;CL:0000559!1.61e-20!63;CL:0002009!5.05e-19!65;CL:0000839!8.55e-18!70;CL:0002057!2.93e-16!42;CL:0000557!3.54e-16!71;CL:0000860!1.91e-15!45;CL:0000766!2.87e-13!76;CL:0000057!2.39e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.15e-17;39!CL:0000234;1.15e-17;39!CL:0000860;3.89e-17;33!CL:0002057;3.89e-17;33!CL:0000576;3.57e-12;48!CL:0000766;3.02e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,1.70e-22,59;CL:0000576,1.70e-22,59;CL:0000040,1.70e-22,59;CL:0000559,1.70e-22,59;CL:0002009,1.02e-20,61;CL:0000473,3.86e-20,48;CL:0000234,3.86e-20,48;CL:0000839,3.45e-19,66;CL:0000557,2.41e-17,67;CL:0000860,2.65e-16,42;CL:0002057,2.65e-16,42;CL:0000766,7.43e-15,72;CL:0000057,3.94e-07,76 | |||
|ontology_enrichment_development_v019=CL:0002057;4.01e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004765!8.05e-16!101;UBERON:0001434!8.05e-16!101;UBERON:0002371!8.84e-16!80;UBERON:0001474!2.21e-14!86;UBERON:0000468!1.86e-12!659;UBERON:0000062!2.97e-12!511;UBERON:0002204!7.50e-12!167;UBERON:0002405!2.42e-10!115;UBERON:0002050!4.36e-09!605;UBERON:0005423!4.36e-09!605;UBERON:0000467!4.92e-09!625;UBERON:0000923!7.30e-09!604;UBERON:0005291!7.30e-09!604;UBERON:0006598!7.30e-09!604;UBERON:0002532!7.30e-09!604;UBERON:0000480!8.75e-09!626;UBERON:0000922!2.83e-08!612;UBERON:0002193!6.12e-08!112;UBERON:0002390!1.45e-07!102;UBERON:0003061!1.45e-07!102;UBERON:0001049!3.90e-07!57;UBERON:0005068!3.90e-07!57;UBERON:0006241!3.90e-07!57;UBERON:0007135!3.90e-07!57;UBERON:0002616!5.70e-07!59 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001434,1.33e-17,100;UBERON:0002371,7.95e-17,76;UBERON:0004765,1.50e-15,90;UBERON:0001474,2.20e-15,82;UBERON:0002405,4.14e-14,93;UBERON:0002204,1.92e-13,167;UBERON:0000923,2.14e-10,560;UBERON:0010316,2.14e-10,560;UBERON:0005291,2.14e-10,560;UBERON:0006598,2.14e-10,560;UBERON:0010317,2.14e-10,560;UBERON:0002532,2.14e-10,560;UBERON:0002050,2.14e-10,564;UBERON:0005423,8.36e-09,581;UBERON:0002193,2.22e-08,108;UBERON:0000926,3.03e-08,315;UBERON:0004120,3.03e-08,315;UBERON:0006603,3.03e-08,315;UBERON:0002390,5.08e-08,98;UBERON:0003061,5.08e-08,98;UBERON:0001049,6.76e-08,56;UBERON:0005068,6.76e-08,56;UBERON:0006241,6.76e-08,56;UBERON:0007135,6.76e-08,56;UBERON:0010314,1.13e-07,132;UBERON:0000922,1.14e-07,592;UBERON:0000073,1.82e-07,53;UBERON:0002616,1.82e-07,53 | |||
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| ||
|short_description=p3@SLC38A6 | |||
}} | }} |
Latest revision as of 21:08, 24 September 2015
Short description: | p3@SLC38A6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLC38A6_5end |
Coexpression cluster: | C3438_Macrophage_CD14_Monocytederived_Dendritic_Fibroblast_mesenchymal_ductal |
Association with transcript: | -17bp_to_ENST00000525723, uc001xfj.1, uc001xfk.2_5end |
EntrezGene: | SLC38A6 |
HGNC: | 19863 |
UniProt: | E9PM79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 1.70e-22 | 59 |
monocyte | 1.70e-22 | 59 |
monoblast | 1.70e-22 | 59 |
promonocyte | 1.70e-22 | 59 |
macrophage dendritic cell progenitor | 1.02e-20 | 61 |
defensive cell | 3.86e-20 | 48 |
phagocyte | 3.86e-20 | 48 |
myeloid lineage restricted progenitor cell | 3.45e-19 | 66 |
granulocyte monocyte progenitor cell | 2.41e-17 | 67 |
classical monocyte | 2.65e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.65e-16 | 42 |
myeloid leukocyte | 7.43e-15 | 72 |
fibroblast | 3.94e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
skeletal system | 1.33e-17 | 100 |
bone marrow | 7.95e-17 | 76 |
skeletal element | 1.50e-15 | 90 |
bone element | 2.20e-15 | 82 |
immune system | 4.14e-14 | 93 |
musculoskeletal system | 1.92e-13 | 167 |
germ layer | 2.14e-10 | 560 |
germ layer / neural crest | 2.14e-10 | 560 |
embryonic tissue | 2.14e-10 | 560 |
presumptive structure | 2.14e-10 | 560 |
germ layer / neural crest derived structure | 2.14e-10 | 560 |
epiblast (generic) | 2.14e-10 | 560 |
embryonic structure | 2.14e-10 | 564 |
developing anatomical structure | 8.36e-09 | 581 |
hemolymphoid system | 2.22e-08 | 108 |
mesoderm | 3.03e-08 | 315 |
mesoderm-derived structure | 3.03e-08 | 315 |
presumptive mesoderm | 3.03e-08 | 315 |
hematopoietic system | 5.08e-08 | 98 |
blood island | 5.08e-08 | 98 |
neural tube | 6.76e-08 | 56 |
neural rod | 6.76e-08 | 56 |
future spinal cord | 6.76e-08 | 56 |
neural keel | 6.76e-08 | 56 |
structure with developmental contribution from neural crest | 1.13e-07 | 132 |
embryo | 1.14e-07 | 592 |
regional part of nervous system | 1.82e-07 | 53 |
regional part of brain | 1.82e-07 | 53 |