FFCP PHASE1:Hg19::chr2:25643953..25643972,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-13bp_to_ENST00000352271_5end | |association_with_transcript=-13bp_to_ENST00000352271_5end | ||
|cluster_id=chr2:25643953..25643972,+ | |||
|coexpression_cluster_id=C1412 | |||
|description=CAGE_peak_1_at_ENST00000352271_5end | |description=CAGE_peak_1_at_ENST00000352271_5end | ||
|id=chr2:25643953..25643972,+ | |id=chr2:25643953..25643972,+ | ||
|ontology_enrichment_celltype=CL:0000945!3.30e-52!24;CL:0000826!3.30e-52!24;CL:0000236!8.14e-29!14;CL:0000542!9.66e-24!53;CL:0000051!9.66e-24!53;CL:0000838!3.28e-22!52;CL:0002087!9.78e-18!119;CL:0000738!1.13e-16!140;CL:0002031!1.95e-13!124;CL:0000037!2.09e-12!172;CL:0000566!2.09e-12!172;CL:0000988!3.75e-11!182;CL:0002032!6.78e-11!165;CL:0000837!6.78e-11!165;CL:0000842!3.98e-07!3 | |ontology_enrichment_celltype=CL:0000945!3.30e-52!24;CL:0000826!3.30e-52!24;CL:0000236!8.14e-29!14;CL:0000542!9.66e-24!53;CL:0000051!9.66e-24!53;CL:0000838!3.28e-22!52;CL:0002087!9.78e-18!119;CL:0000738!1.13e-16!140;CL:0002031!1.95e-13!124;CL:0000037!2.09e-12!172;CL:0000566!2.09e-12!172;CL:0000988!3.75e-11!182;CL:0002032!6.78e-11!165;CL:0000837!6.78e-11!165;CL:0000842!3.98e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.33e-88;24!CL:0000236;7.92e-45;13!CL:0000542;2.43e-25;53!CL:0002087;3.91e-09;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.42e-88,24;CL:0000826,1.42e-88,24;CL:0000236,1.67e-49,14;CL:0000542,4.17e-45,53;CL:0000051,4.17e-45,53;CL:0000838,5.08e-42,52;CL:0002087,2.61e-21,115;CL:0002031,2.12e-18,120;CL:0000738,3.55e-17,136;CL:0002032,1.17e-13,161;CL:0000837,1.17e-13,161;CL:0000037,7.31e-13,168;CL:0000988,6.24e-12,177 | |||
|ontology_enrichment_development_v019=CL:0000051;2.43e-25;53!UBERON:0004872;6.53e-07;7 | |||
|ontology_enrichment_disease=DOID:0060058!2.04e-08!10 | |ontology_enrichment_disease=DOID:0060058!2.04e-08!10 | ||
|ontology_enrichment_disease_v019=DOID:0060058;4.73e-08;10!DOID:630;9.91e-07;1!DOID:0050177;9.91e-07;1!DOID:0050427;9.91e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,4.86e-08,10;DOID:630,9.91e-07,1;DOID:0050177,9.91e-07,1;DOID:0050427,9.91e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!7.72e-17!115;UBERON:0004177!4.91e-08!7;UBERON:0002106!5.95e-08!3;UBERON:0004854!5.95e-08!3;UBERON:0009034!5.95e-08!3;UBERON:0002095!5.95e-08!3;UBERON:0004782!5.95e-08!3;UBERON:0003281!5.95e-08!3;UBERON:0009664!5.95e-08!3;UBERON:0002296!5.95e-08!3;UBERON:0005602!5.95e-08!3;UBERON:0001179!5.95e-08!3;UBERON:0006293!5.95e-08!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;1.12e-07;3!UBERON:0004921;4.62e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.14e-07,3;UBERON:0004854,1.14e-07,3;UBERON:0009034,1.14e-07,3;UBERON:0002095,1.14e-07,3;UBERON:0004782,1.14e-07,3;UBERON:0003281,1.14e-07,3;UBERON:0009664,1.14e-07,3;UBERON:0002296,1.14e-07,3;UBERON:0005602,1.14e-07,3;UBERON:0001179,1.14e-07,3;UBERON:0006293,1.14e-07,3 | |||
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| ||
|short_description=p1@ENST00000352271 | |short_description=p1@ENST00000352271 | ||
}} | }} |
Latest revision as of 08:55, 29 July 2015
Short description: | p1@ENST00000352271 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000352271_5end |
Coexpression cluster: | C1412_lymphangiectasia_xeroderma_B_b_splenic_myeloma_CD19 |
Association with transcript: | -13bp_to_ENST00000352271_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.42e-88 | 24 |
pro-B cell | 1.42e-88 | 24 |
B cell | 1.67e-49 | 14 |
lymphocyte | 4.17e-45 | 53 |
common lymphoid progenitor | 4.17e-45 | 53 |
lymphoid lineage restricted progenitor cell | 5.08e-42 | 52 |
nongranular leukocyte | 2.61e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 2.12e-18 | 120 |
leukocyte | 3.55e-17 | 136 |
hematopoietic oligopotent progenitor cell | 1.17e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.17e-13 | 161 |
hematopoietic stem cell | 7.31e-13 | 168 |
hematopoietic cell | 6.24e-12 | 177 |
Ontology term | p-value | n |
---|---|---|
spleen | 1.14e-07 | 3 |
gastrointestinal system mesentery | 1.14e-07 | 3 |
stomach region | 1.14e-07 | 3 |
mesentery | 1.14e-07 | 3 |
gastrointestinal system serosa | 1.14e-07 | 3 |
mesentery of stomach | 1.14e-07 | 3 |
gut mesentery | 1.14e-07 | 3 |
dorsal mesentery | 1.14e-07 | 3 |
dorsal mesogastrium | 1.14e-07 | 3 |
peritoneal cavity | 1.14e-07 | 3 |
spleen primordium | 1.14e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 4.86e-08 | 10 |
genetic disease | 9.91e-07 | 1 |
monogenic disease | 9.91e-07 | 1 |
xeroderma pigmentosum | 9.91e-07 | 1 |