FFCP PHASE1:Hg19::chr9:126777688..126777700,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9355 | |EntrezGene=9355 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6594 | |HGNC=6594 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=12bp_to_ENST00000488674_5end | |association_with_transcript=12bp_to_ENST00000488674_5end | ||
|cluster_id=chr9:126777688..126777700,+ | |||
|coexpression_cluster_id=C16 | |||
|description=CAGE_peak_6_at_LHX2_5end | |description=CAGE_peak_6_at_LHX2_5end | ||
|id=chr9:126777688..126777700,+ | |id=chr9:126777688..126777700,+ | ||
|ontology_enrichment_celltype=CL:0002605!2.09e-09!3;CL:0002150!1.88e-08!3;CL:0000861!1.88e-08!3 | |ontology_enrichment_celltype=CL:0002605!2.09e-09!3;CL:0002150!1.88e-08!3;CL:0000861!1.88e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0002586;2.59e-12;3!CL:0000149;1.44e-09;4!CL:0000540;8.48e-07;6!CL:0000404;8.48e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,2.31e-12,3;CL:0000149,1.32e-09,4;CL:0000540,8.48e-07,6;CL:0000031,8.48e-07,6;CL:0000404,8.48e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000031;8.48e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:154;9.07e-18;2!DOID:4236;9.07e-18;2 | |||
|ontology_enrichment_disease_v019_2=DOID:154,1.07e-17,2;DOID:4236,1.07e-17,2 | |||
|ontology_enrichment_uberon=UBERON:0001893!1.25e-37!34;UBERON:0001869!4.92e-37!32;UBERON:0000956!7.48e-37!25;UBERON:0000203!7.48e-37!25;UBERON:0002791!7.44e-36!33;UBERON:0002780!4.28e-33!41;UBERON:0001890!4.28e-33!41;UBERON:0006240!4.28e-33!41;UBERON:0003056!5.72e-33!61;UBERON:0003080!3.74e-32!42;UBERON:0002020!1.14e-31!34;UBERON:0003528!1.14e-31!34;UBERON:0002619!1.10e-29!22;UBERON:0001950!6.47e-29!20;UBERON:0005743!1.59e-27!86;UBERON:0000955!3.36e-27!69;UBERON:0006238!3.36e-27!69;UBERON:0000073!1.39e-25!94;UBERON:0001016!1.39e-25!94;UBERON:0001017!2.58e-25!82;UBERON:0002616!6.82e-23!59;UBERON:0001049!5.88e-22!57;UBERON:0005068!5.88e-22!57;UBERON:0006241!5.88e-22!57;UBERON:0007135!5.88e-22!57;UBERON:0002346!3.91e-21!90;UBERON:0003075!6.27e-21!86;UBERON:0007284!6.27e-21!86;UBERON:0000033!3.66e-20!123;UBERON:0000153!9.15e-19!129;UBERON:0007811!9.15e-19!129;UBERON:0001871!1.72e-16!7;UBERON:0000924!4.55e-15!173;UBERON:0006601!4.55e-15!173;UBERON:0004121!1.09e-14!169;UBERON:0000200!3.53e-11!6;UBERON:0002771!1.83e-09!3;UBERON:0002021!6.01e-09!5;UBERON:0000349!8.00e-09!5;UBERON:0007023!1.46e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002771;5.48e-18;2!UBERON:0001781;2.59e-12;3!UBERON:0001782;2.59e-12;3!UBERON:0000966;6.55e-08;5!UBERON:0002021;6.55e-08;5!UBERON:0005388;6.55e-08;5!UBERON:0001802;6.55e-08;5!UBERON:0001950;2.60e-07;20!UBERON:0000200;7.17e-07;6!UBERON:0002619;9.39e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002771,5.48e-18,2;UBERON:0001782,2.31e-12,3;UBERON:0005424,2.31e-12,3;UBERON:0001781,1.32e-09,4;UBERON:0002021,7.49e-08,5;UBERON:0001950,2.77e-07,20;UBERON:0001017,6.43e-07,81;UBERON:0000200,7.17e-07,6;UBERON:0000966,8.02e-07,6;UBERON:0005388,8.02e-07,6;UBERON:0001802,8.02e-07,6;UBERON:0002619,9.95e-07,22 | |||
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| ||
|short_description=p6@LHX2 | |short_description=p6@LHX2 | ||
}} | }} |
Latest revision as of 23:21, 24 September 2015
Short description: | p6@LHX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LHX2_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | 12bp_to_ENST00000488674_5end |
EntrezGene: | LHX2 |
HGNC: | 6594 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 2.31e-12 | 3 |
visual pigment cell | 1.32e-09 | 4 |
neuron | 8.48e-07 | 6 |
neuroblast | 8.48e-07 | 6 |
electrically signaling cell | 8.48e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
middle temporal gyrus | 5.48e-18 | 2 |
pigmented layer of retina | 2.31e-12 | 3 |
presumptive retinal pigmented epithelium | 2.31e-12 | 3 |
layer of retina | 1.32e-09 | 4 |
occipital lobe | 7.49e-08 | 5 |
neocortex | 2.77e-07 | 20 |
central nervous system | 6.43e-07 | 81 |
gyrus | 7.17e-07 | 6 |
retina | 8.02e-07 | 6 |
photoreceptor array | 8.02e-07 | 6 |
posterior segment of eyeball | 8.02e-07 | 6 |
regional part of cerebral cortex | 9.95e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
mixed cell type cancer | 1.07e-17 | 2 |
carcinosarcoma | 1.07e-17 | 2 |