FFCP PHASE1:Hg19::chr2:235903499..235903512,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23677 | |EntrezGene=23677 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10826 | |HGNC=10826 | ||
|TSSclassifier=strong | |||
|UniProt=C9JRG1 | |UniProt=C9JRG1 | ||
|association_with_transcript=15bp_to_ENST00000454947_5end | |association_with_transcript=15bp_to_ENST00000454947_5end | ||
|cluster_id=chr2:235903499..235903512,+ | |||
|coexpression_cluster_id=C70 | |||
|description=CAGE_peak_17_at_SH3BP4_5end | |description=CAGE_peak_17_at_SH3BP4_5end | ||
|id=chr2:235903499..235903512,+ | |id=chr2:235903499..235903512,+ | ||
|ontology_enrichment_celltype=CL:0000064!4.69e-17!3;CL:0005012!4.69e-17!3;CL:0000067!4.69e-17!3;CL:0002304!4.69e-17!3;CL:0002586!3.31e-08!3;CL:0000319!5.13e-07!1 | |ontology_enrichment_celltype=CL:0000064!4.69e-17!3;CL:0005012!4.69e-17!3;CL:0000067!4.69e-17!3;CL:0002304!4.69e-17!3;CL:0002586!3.31e-08!3;CL:0000319!5.13e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000319;2.37e-29;1!CL:0000159;2.05e-15;2!CL:0002178;7.42e-11;3!CL:0000306;2.52e-08;4!CL:0002222;2.52e-08;4!CL:0002224;2.52e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000319,2.37e-29,1;CL:0000159,2.05e-15,2;CL:0002178,7.42e-11,3;CL:0000306,2.61e-08,4;CL:0002222,2.61e-08,4;CL:0002224,2.61e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0008801;7.48e-30;1!UBERON:0006298;1.33e-29;1 | |||
|ontology_enrichment_disease=DOID:3030!5.13e-07!1;DOID:0050619!8.97e-07!1;DOID:1357!8.97e-07!1 | |ontology_enrichment_disease=DOID:3030!5.13e-07!1;DOID:0050619!8.97e-07!1;DOID:1357!8.97e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:3030;2.37e-29;1!DOID:3493;1.33e-15;2!DOID:4362;6.58e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,2.37e-29,1;DOID:3493,1.33e-15,2;DOID:4362,6.39e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000153!1.27e-23!129;UBERON:0007811!1.27e-23!129;UBERON:0000033!6.98e-23!123;UBERON:0003056!3.13e-18!61;UBERON:0003075!1.85e-17!86;UBERON:0007284!1.85e-17!86;UBERON:0007625!1.94e-17!11;UBERON:0001778!4.69e-17!3;UBERON:0001775!4.69e-17!3;UBERON:0002346!1.65e-16!90;UBERON:0007023!2.01e-15!115;UBERON:0004121!4.49e-15!169;UBERON:0000924!1.32e-14!173;UBERON:0006601!1.32e-14!173;UBERON:0005743!3.30e-13!86;UBERON:0000488!6.37e-13!4;UBERON:0001829!1.64e-12!2;UBERON:0001049!2.97e-12!57;UBERON:0005068!2.97e-12!57;UBERON:0006241!2.97e-12!57;UBERON:0007135!2.97e-12!57;UBERON:0001456!5.37e-12!21;UBERON:0002616!9.28e-12!59;UBERON:0000073!1.19e-11!94;UBERON:0001016!1.19e-11!94;UBERON:0001444!1.36e-11!48;UBERON:0000955!3.42e-11!69;UBERON:0006238!3.42e-11!69;UBERON:0001017!1.58e-10!82;UBERON:0002780!1.78e-10!41;UBERON:0001890!1.78e-10!41;UBERON:0006240!1.78e-10!41;UBERON:0002298!1.82e-10!8;UBERON:0001893!1.88e-10!34;UBERON:0003080!3.43e-10!42;UBERON:0000019!7.63e-10!19;UBERON:0000047!7.63e-10!19;UBERON:0004088!7.63e-10!19;UBERON:0003072!7.63e-10!19;UBERON:0003071!7.63e-10!19;UBERON:0004128!7.63e-10!19;UBERON:0000970!2.54e-09!20;UBERON:0001044!3.77e-09!6;UBERON:0003293!3.77e-09!6;UBERON:0003294!3.77e-09!6;UBERON:0010047!3.77e-09!6;UBERON:0000167!3.77e-09!6;UBERON:0002104!7.56e-09!21;UBERON:0002203!9.10e-09!6;UBERON:0001768!9.10e-09!6;UBERON:0002791!1.39e-08!33;UBERON:0002020!2.67e-08!34;UBERON:0003528!2.67e-08!34;UBERON:0001781!3.31e-08!3;UBERON:0001782!3.31e-08!3;UBERON:0005424!3.31e-08!3;UBERON:0000020!5.03e-08!23;UBERON:0006331!5.44e-08!3;UBERON:0000988!1.02e-07!3;UBERON:0001032!1.15e-07!24;UBERON:0004456!1.15e-07!24;UBERON:0000064!1.17e-07!219;UBERON:0001831!4.09e-07!1;UBERON:0001567!4.09e-07!1;UBERON:0008801!4.09e-07!1;UBERON:0001736!4.58e-07!1;UBERON:0006298!4.58e-07!1;UBERON:0000475!8.29e-07!365;UBERON:0001764!8.97e-07!1;UBERON:0001825!8.97e-07!1;UBERON:0001869!9.05e-07!32;UBERON:0002038!9.48e-07!1;UBERON:0009661!9.48e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001829;1.51e-57;2!UBERON:0001044;4.21e-43;6!UBERON:0003293;4.21e-43;6!UBERON:0003294;4.21e-43;6!UBERON:0010047;4.21e-43;6!UBERON:0003408;4.21e-43;6!UBERON:0000167;4.21e-43;6!UBERON:0001041;6.95e-33;14!UBERON:0001831;7.48e-30;1!UBERON:0001567;7.48e-30;1!UBERON:0001736;1.33e-29;1!UBERON:0004089;1.15e-15;2!UBERON:0000161;3.31e-14;19!UBERON:0000166;3.31e-14;19!UBERON:0004921;1.77e-12;33!UBERON:0000165;7.13e-10;28!UBERON:0002365;8.30e-09;31!UBERON:0002330;8.30e-09;31!UBERON:0010077;2.52e-08;4!UBERON:0005389;2.52e-08;4!UBERON:0000484;2.52e-08;4!UBERON:0000965;2.52e-08;4!UBERON:0001803;2.52e-08;4!UBERON:0000033;3.32e-07;50!UBERON:0000153;4.63e-07;54!UBERON:0000945;5.08e-07;5!UBERON:0010039;5.08e-07;5!UBERON:0001444;6.01e-07;48!UBERON:0007811;8.87e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,1.51e-57,2;UBERON:0001044,4.21e-43,6;UBERON:0003293,4.21e-43,6;UBERON:0003294,4.21e-43,6;UBERON:0010047,4.21e-43,6;UBERON:0000167,4.21e-43,6;UBERON:0001831,7.48e-30,1;UBERON:0001567,7.48e-30,1;UBERON:0008801,7.48e-30,1;UBERON:0001736,1.33e-29,1;UBERON:0006298,1.33e-29,1;UBERON:0003408,3.03e-26,10;UBERON:0004089,1.15e-15,2;UBERON:0000166,2.26e-12,22;UBERON:0001444,9.39e-10,49;UBERON:0000165,1.48e-09,29;UBERON:0000930,1.48e-09,29;UBERON:0002365,5.54e-09,31;UBERON:0002330,5.54e-09,31;UBERON:0000033,1.37e-08,56;UBERON:0010077,2.61e-08,4;UBERON:0005389,2.61e-08,4;UBERON:0000484,2.61e-08,4;UBERON:0002546,2.61e-08,4;UBERON:0000965,2.61e-08,4;UBERON:0001803,2.61e-08,4;UBERON:0003073,2.61e-08,4;UBERON:0005426,2.61e-08,4;UBERON:0000161,7.96e-08,36;UBERON:0000153,8.45e-08,62;UBERON:0007811,8.45e-08,62 | |||
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|short_description=p17@SH3BP4 | |short_description=p17@SH3BP4 | ||
}} | }} |
Latest revision as of 01:34, 16 September 2015
Short description: | p17@SH3BP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_SH3BP4_5end |
Coexpression cluster: | C70_parotid_submaxillary_salivary_throat_trachea_aorta_tongue |
Association with transcript: | 15bp_to_ENST00000454947_5end |
EntrezGene: | SH3BP4 |
HGNC: | 10826 |
UniProt: | C9JRG1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mucus secreting cell | 2.37e-29 | 1 |
seromucus secreting cell | 2.05e-15 | 2 |
epithelial cell of stomach | 7.42e-11 | 3 |
crystallin accumulating cell | 2.61e-08 | 4 |
vertebrate lens cell | 2.61e-08 | 4 |
lens epithelial cell | 2.61e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
major salivary gland | 1.51e-57 | 2 |
saliva-secreting gland | 4.21e-43 | 6 |
gland of oral region | 4.21e-43 | 6 |
gland of foregut | 4.21e-43 | 6 |
oral gland | 4.21e-43 | 6 |
oral cavity | 4.21e-43 | 6 |
parotid gland | 7.48e-30 | 1 |
cheek | 7.48e-30 | 1 |
parotid gland primordium | 7.48e-30 | 1 |
submandibular gland | 1.33e-29 | 1 |
submandibular gland primordium | 1.33e-29 | 1 |
gland of gut | 3.03e-26 | 10 |
midface | 1.15e-15 | 2 |
oral opening | 2.26e-12 | 22 |
subdivision of head | 9.39e-10 | 49 |
mouth | 1.48e-09 | 29 |
stomodeum | 1.48e-09 | 29 |
exocrine gland | 5.54e-09 | 31 |
exocrine system | 5.54e-09 | 31 |
head | 1.37e-08 | 56 |
cuboidal epithelium | 2.61e-08 | 4 |
transparent eye structure | 2.61e-08 | 4 |
simple cuboidal epithelium | 2.61e-08 | 4 |
cranial placode | 2.61e-08 | 4 |
lens of camera-type eye | 2.61e-08 | 4 |
epithelium of lens | 2.61e-08 | 4 |
lens placode | 2.61e-08 | 4 |
lens vesicle | 2.61e-08 | 4 |
orifice | 7.96e-08 | 36 |
anterior region of body | 8.45e-08 | 62 |
craniocervical region | 8.45e-08 | 62 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 2.37e-29 | 1 |
signet ring cell adenocarcinoma | 1.33e-15 | 2 |
cervical cancer | 6.39e-07 | 5 |