FFCP PHASE1:Hg19::chr8:4852367..4852374,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64478 | |EntrezGene=64478 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14026 | |HGNC=14026 | ||
|TSSclassifier=strong | |||
|UniProt=F5GZ18,Q59FF8,Q96PZ7 | |UniProt=F5GZ18,Q59FF8,Q96PZ7 | ||
|association_with_transcript=-39bp_to_NM_033225,uc011kwk.1_5end | |association_with_transcript=-39bp_to_NM_033225,uc011kwk.1_5end | ||
|cluster_id=chr8:4852367..4852374,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_22_at_CSMD1_5end | |description=CAGE_peak_22_at_CSMD1_5end | ||
|id=chr8:4852367..4852374,- | |id=chr8:4852367..4852374,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006238;2.68e-11;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001893!2.83e-72!34;UBERON:0001869!8.20e-71!32;UBERON:0001049!5.01e-70!57;UBERON:0005068!5.01e-70!57;UBERON:0006241!5.01e-70!57;UBERON:0007135!5.01e-70!57;UBERON:0002780!1.09e-69!41;UBERON:0001890!1.09e-69!41;UBERON:0006240!1.09e-69!41;UBERON:0000955!1.17e-68!69;UBERON:0006238!1.17e-68!69;UBERON:0002791!3.97e-68!33;UBERON:0001017!5.35e-68!82;UBERON:0003080!6.34e-68!42;UBERON:0002616!1.84e-67!59;UBERON:0002020!4.75e-66!34;UBERON:0003528!4.75e-66!34;UBERON:0005743!1.46e-64!86;UBERON:0002619!3.52e-63!22;UBERON:0001950!3.99e-62!20;UBERON:0002346!2.11e-58!90;UBERON:0000073!7.31e-58!94;UBERON:0001016!7.31e-58!94;UBERON:0000956!2.17e-55!25;UBERON:0000203!2.17e-55!25;UBERON:0003075!4.67e-54!86;UBERON:0007284!4.67e-54!86;UBERON:0003056!5.59e-49!61;UBERON:0000033!8.83e-41!123;UBERON:0007023!5.13e-39!115;UBERON:0000153!1.45e-38!129;UBERON:0007811!1.45e-38!129;UBERON:0000924!2.28e-34!173;UBERON:0006601!2.28e-34!173;UBERON:0004121!3.47e-31!169;UBERON:0000200!1.44e-28!6;UBERON:0001871!9.78e-21!7;UBERON:0000025!3.15e-17!194;UBERON:0001872!8.73e-16!5;UBERON:0002021!1.32e-15!5;UBERON:0002771!4.54e-15!3;UBERON:0002420!1.31e-12!9;UBERON:0007245!1.31e-12!9;UBERON:0010009!1.31e-12!9;UBERON:0010011!1.31e-12!9;UBERON:0000454!1.31e-12!9;UBERON:0004111!1.65e-12!241;UBERON:0002308!1.76e-12!9;UBERON:0000125!1.76e-12!9;UBERON:0000064!2.97e-11!219;UBERON:0000369!4.49e-11!4;UBERON:0002435!4.49e-11!4;UBERON:0000204!4.49e-11!4;UBERON:0010082!4.49e-11!4;UBERON:0001870!6.72e-11!2;UBERON:0009663!9.58e-11!7;UBERON:0000483!1.03e-10!309;UBERON:0000119!1.54e-10!312;UBERON:0000477!2.41e-10!286;UBERON:0002360!1.38e-09!2;UBERON:0000094!1.38e-09!2;UBERON:0007645!1.38e-09!2;UBERON:0000349!7.06e-09!5;UBERON:0004733!7.29e-09!12;UBERON:0002028!7.29e-09!12;UBERON:0007277!7.29e-09!12;UBERON:0002298!7.65e-09!8;UBERON:0000475!8.18e-09!365;UBERON:0004732!3.65e-08!13;UBERON:0005383!4.67e-07!3;UBERON:0005382!4.67e-07!3;UBERON:0003076!4.82e-07!15;UBERON:0003057!4.82e-07!15;UBERON:0000988!8.80e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;7.58e-34;20!UBERON:0002619;5.92e-31;22!UBERON:0002022;1.78e-29;1!UBERON:0000956;1.91e-27;25!UBERON:0000203;1.91e-27;25!UBERON:0001872;1.44e-23;5!UBERON:0002791;1.50e-20;32!UBERON:0001869;2.83e-19;32!UBERON:0003528;4.37e-19;34!UBERON:0002020;4.37e-19;34!UBERON:0001893;1.05e-15;34!UBERON:0002780;1.12e-13;41!UBERON:0001890;1.12e-13;41!UBERON:0000955;2.47e-11;68!UBERON:0001870;8.99e-11;3!UBERON:0000073;1.09e-09;53!UBERON:0002616;1.09e-09;53!UBERON:0001017;3.97e-09;75!UBERON:0001016;1.70e-08;83!UBERON:0002021;5.70e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.07e-33,20;UBERON:0002619,8.10e-31,22;UBERON:0002022,1.33e-29,1;UBERON:0000956,2.51e-27,25;UBERON:0000203,2.51e-27,25;UBERON:0001872,2.02e-23,5;UBERON:0002791,1.23e-21,32;UBERON:0001869,1.23e-21,32;UBERON:0003528,1.98e-20,34;UBERON:0002020,1.98e-20,34;UBERON:0001893,1.98e-20,34;UBERON:0000955,5.48e-20,68;UBERON:0006238,5.48e-20,68;UBERON:0002780,4.24e-17,41;UBERON:0001890,4.24e-17,41;UBERON:0003080,4.24e-17,41;UBERON:0006240,4.24e-17,41;UBERON:0001017,6.63e-17,81;UBERON:0001016,2.81e-15,89;UBERON:0000073,2.18e-13,53;UBERON:0002616,2.18e-13,53;UBERON:0001049,1.06e-12,56;UBERON:0005068,1.06e-12,56;UBERON:0006241,1.06e-12,56;UBERON:0007135,1.06e-12,56;UBERON:0003056,1.05e-11,61;UBERON:0001870,1.09e-10,3;UBERON:0003075,8.05e-09,82;UBERON:0007284,8.05e-09,82;UBERON:0002346,1.99e-08,86;UBERON:0004121,3.72e-08,171;UBERON:0000924,3.72e-08,171;UBERON:0006601,3.72e-08,171;UBERON:0010371,5.06e-07,104;UBERON:0002021,6.04e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93866549219044,0.463840490809256,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0.482385754501632,0,0.221158519862449,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.61214552326098,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2029051231617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,1.27574068981852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0.886068179966986,0.732157589411779,0.625954653532499,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691292180758654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637724760305049,0,0,0,0,0,0,0,0.642292250964595,0,0.798169295285756,0.615349092722265,1.26035848110859,0.484100767249525,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.87798860003913,0,1.03343398250592,1.26831620387814,0.546974809018219,0,0,0.703484977438482,0,0,0,0,0.227662191351298,0,0,0,0.271878931907327,0.657727735628491,0,0,0,0.471346769748006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.543931921527318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93866549219044,0.463840490809256,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0.482385754501632,0,0.221158519862449,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.61214552326098,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2029051231617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,1.27574068981852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0.886068179966986,0.732157589411779,0.625954653532499,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691292180758654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637724760305049,0,0,0,0,0,0,0,0.642292250964595,0,0.798169295285756,0.615349092722265,1.26035848110859,0.484100767249525,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.87798860003913,0,1.03343398250592,1.26831620387814,0.546974809018219,0,0,0.703484977438482,0,0,0,0,0.227662191351298,0,0,0,0.271878931907327,0.657727735628491,0,0,0,0.471346769748006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.543931921527318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p22@CSMD1 | |short_description=p22@CSMD1 | ||
}} | }} |
Latest revision as of 09:35, 18 September 2015
Short description: | p22@CSMD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_22_at_CSMD1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -39bp_to_NM_033225, uc011kwk.1_5end |
EntrezGene: | CSMD1 |
HGNC: | 14026 |
UniProt: | F5GZ18Q59FF8Q96PZ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 1.07e-33 | 20 |
regional part of cerebral cortex | 8.10e-31 | 22 |
insula | 1.33e-29 | 1 |
cerebral cortex | 2.51e-27 | 25 |
pallium | 2.51e-27 | 25 |
parietal lobe | 2.02e-23 | 5 |
regional part of telencephalon | 1.23e-21 | 32 |
cerebral hemisphere | 1.23e-21 | 32 |
brain grey matter | 1.98e-20 | 34 |
gray matter | 1.98e-20 | 34 |
telencephalon | 1.98e-20 | 34 |
brain | 5.48e-20 | 68 |
future brain | 5.48e-20 | 68 |
regional part of forebrain | 4.24e-17 | 41 |
forebrain | 4.24e-17 | 41 |
anterior neural tube | 4.24e-17 | 41 |
future forebrain | 4.24e-17 | 41 |
central nervous system | 6.63e-17 | 81 |
nervous system | 2.81e-15 | 89 |
regional part of nervous system | 2.18e-13 | 53 |
regional part of brain | 2.18e-13 | 53 |
neural tube | 1.06e-12 | 56 |
neural rod | 1.06e-12 | 56 |
future spinal cord | 1.06e-12 | 56 |
neural keel | 1.06e-12 | 56 |
pre-chordal neural plate | 1.05e-11 | 61 |
frontal cortex | 1.09e-10 | 3 |
neural plate | 8.05e-09 | 82 |
presumptive neural plate | 8.05e-09 | 82 |
neurectoderm | 1.99e-08 | 86 |
ectoderm-derived structure | 3.72e-08 | 171 |
ectoderm | 3.72e-08 | 171 |
presumptive ectoderm | 3.72e-08 | 171 |
ecto-epithelium | 5.06e-07 | 104 |
occipital lobe | 6.04e-07 | 5 |