FFCP PHASE1:Hg19::chr2:182321734..182321748,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3676 | |EntrezGene=3676 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6140 | |HGNC=6140 | ||
|TSSclassifier=strong | |||
|UniProt=E7ESG7,P13612 | |UniProt=E7ESG7,P13612 | ||
|association_with_transcript=115bp_to_ENST00000425522,NM_000885,uc002unt.2,uc002unu.2,uc010zfl.1_5end | |association_with_transcript=115bp_to_ENST00000425522,NM_000885,uc002unt.2,uc002unu.2,uc010zfl.1_5end | ||
|cluster_id=chr2:182321734..182321748,+ | |||
|coexpression_cluster_id=C57 | |||
|description=CAGE_peak_11_at_ITGA4_5end | |description=CAGE_peak_11_at_ITGA4_5end | ||
|id=chr2:182321734..182321748,+ | |id=chr2:182321734..182321748,+ | ||
|ontology_enrichment_celltype=CL:0000542!3.11e-43!53;CL:0000051!3.11e-43!53;CL:0000838!1.71e-42!52;CL:0000037!3.01e-40!172;CL:0000566!3.01e-40!172;CL:0002032!1.14e-36!165;CL:0000837!1.14e-36!165;CL:0000988!2.26e-36!182;CL:0002087!2.14e-29!119;CL:0000738!5.28e-29!140;CL:0002031!7.07e-24!124;CL:0000084!5.88e-23!25;CL:0000827!5.88e-23!25;CL:0000791!1.48e-22!18;CL:0000789!1.48e-22!18;CL:0002420!1.48e-22!18;CL:0002419!1.48e-22!18;CL:0000790!1.48e-22!18;CL:0000236!9.89e-18!14;CL:0000945!4.38e-17!24;CL:0000826!4.38e-17!24;CL:0000625!2.22e-15!11;CL:0000624!2.25e-08!6;CL:0000134!3.28e-07!358;CL:0000763!3.35e-07!112;CL:0000049!3.35e-07!112;CL:0002320!5.83e-07!365 | |ontology_enrichment_celltype=CL:0000542!3.11e-43!53;CL:0000051!3.11e-43!53;CL:0000838!1.71e-42!52;CL:0000037!3.01e-40!172;CL:0000566!3.01e-40!172;CL:0002032!1.14e-36!165;CL:0000837!1.14e-36!165;CL:0000988!2.26e-36!182;CL:0002087!2.14e-29!119;CL:0000738!5.28e-29!140;CL:0002031!7.07e-24!124;CL:0000084!5.88e-23!25;CL:0000827!5.88e-23!25;CL:0000791!1.48e-22!18;CL:0000789!1.48e-22!18;CL:0002420!1.48e-22!18;CL:0002419!1.48e-22!18;CL:0000790!1.48e-22!18;CL:0000236!9.89e-18!14;CL:0000945!4.38e-17!24;CL:0000826!4.38e-17!24;CL:0000625!2.22e-15!11;CL:0000624!2.25e-08!6;CL:0000134!3.28e-07!358;CL:0000763!3.35e-07!112;CL:0000049!3.35e-07!112;CL:0002320!5.83e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000084;4.37e-37;25!CL:0000791;7.39e-35;18!CL:0000789;7.39e-35;18!CL:0002419;7.39e-35;18!CL:0000542;3.55e-31;53!CL:0000625;1.77e-25;11!CL:0000236;1.57e-24;13!CL:0000945;8.35e-14;24!CL:0000624;2.37e-13;6!CL:0000898;8.47e-08;3!CL:0000623;1.32e-07;3!CL:0002087;2.15e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.30e-53,52;CL:0000542,5.49e-52,53;CL:0000051,5.49e-52,53;CL:0000084,3.30e-37,25;CL:0000827,3.30e-37,25;CL:0000791,5.25e-35,18;CL:0000789,5.25e-35,18;CL:0002420,5.25e-35,18;CL:0002419,5.25e-35,18;CL:0000790,5.25e-35,18;CL:0000037,1.61e-28,168;CL:0000988,2.67e-26,177;CL:0000236,3.90e-26,14;CL:0000625,1.38e-25,11;CL:0002032,5.16e-25,161;CL:0000837,5.16e-25,161;CL:0002087,1.92e-21,115;CL:0000738,5.09e-21,136;CL:0002031,1.08e-17,120;CL:0000945,8.41e-14,24;CL:0000826,8.41e-14,24;CL:0000624,2.13e-13,6;CL:0000898,8.29e-08,3;CL:0000623,1.20e-07,3;CL:0000825,1.20e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;7.39e-35;18!CL:0000051;3.55e-31;53 | |||
|ontology_enrichment_disease=DOID:2531!4.97e-13!51;DOID:0060083!4.97e-13!51;DOID:1240!8.50e-12!39;DOID:8692!2.11e-08!31 | |ontology_enrichment_disease=DOID:2531!4.97e-13!51;DOID:0060083!4.97e-13!51;DOID:1240!8.50e-12!39;DOID:8692!2.11e-08!31 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:1240,6.09e-08,39;DOID:2531,2.19e-07,51;DOID:0060083,2.19e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0000178!3.04e-10!15;UBERON:0000179!3.04e-10!15;UBERON:0000463!3.04e-10!15;UBERON:0004177!8.70e-08!7;UBERON:0002390!3.00e-07!102;UBERON:0003061!3.00e-07!102;UBERON:0002193!8.73e-07!112 | |ontology_enrichment_uberon=UBERON:0000178!3.04e-10!15;UBERON:0000179!3.04e-10!15;UBERON:0000463!3.04e-10!15;UBERON:0004177!8.70e-08!7;UBERON:0002390!3.00e-07!102;UBERON:0003061!3.00e-07!102;UBERON:0002193!8.73e-07!112 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.67e-12;15!UBERON:0000179;1.67e-12;15!UBERON:0000463;1.67e-12;15!UBERON:0002390;1.29e-10;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.67e-12,15;UBERON:0000179,1.67e-12,15;UBERON:0000463,1.67e-12,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0.458480434487708,0.57470412614962,0.393553906568396,1.18009283054671,3.0706351847777,0.464448369948228,0,0,0,0.154934401160603,0,4.9912074686924,0.553995408531877,1.40381113229099,0.651032612147555,0,0.32389366601898,0,0.290796477559129,0.377875943688809,0,0,0,0,0.28769239232215,0.256160706529101,0.236482229888585,0,0,0,0.376484679085209,0.272906150057846,0,0.918251677112708,0.320929027076094,0,0,0,0,0,0.56738522469114,0.622822248995575,0.251248665256743,0,0,0,0.368277635987565,0.316462387440884,0,0.212604299965044,0,0,0,0,0,0,0,10.5597746676794,7.09980194640771,6.22656477704488,9.38806489646316,7.20712776664822,6.32227683949932,7.27149360063348,13.3567525634951,11.9534723512984,2.34894875748376,5.73409842187843,3.96513985737078,2.80254281490768,3.95076127162616,1.7703879310245,5.50215067848831,4.93443597598822,1.33749196312542,2.28145586643513,4.2610302516126,1.94826728407911,12.812202541795,6.48132996444642,2.21533894583621,3.5204502289452,2.0494611156108,4.1618991219161,5.91976456573234,10.2249506580764,4.05724320029073,2.81744470007915,1.07016331235885,1.04535523804977,10.9910062416639,11.4966148080576,15.4632350467183,11.3858861408776,9.875527844047,9.76625180784628,8.55406840003537,4.9689789295665,6.2713439465665,7.49584359314075,11.6020853501568,11.4957919568947,7.4594494993151,5.88368430723716,6.37227377084316,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.94633578946371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,6.30498432646167,3.88129634747131,5.64709359630893,0,0,0,0,0,0.749007023947182,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86091223510599,0.862856803274467,4.58928498554811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09883357782012,0.660075999364704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,1.52234282769651,3.0585488285695,0.569647187174163,4.04994018278241,3.70226045777575,3.24236655596359,3.7802200606668,5.55187623405989,0,0,0,0.371606350251437,1.87549976869378,1.56512055366511,9.56557636372934,21.9537308576098,3.63860203251497,0.423347165447766,0.973865820823666,0.561594356226918,1.36940807419915,0,0,7.27954644546894,2.40882112655549,3.02699560786571,0.851692475380653,1.37402137902306,0,0,0,0.586164286206121,0,0,9.46594874665941,7.32758329595204,1.4098700508785,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,1.93398740871803,0,0,0.615424027305347,0,0,0,0,0.394573622547734,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.17546385565892,0.784901281975124,0.332423363800313,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0,0,0,0,0,0,0.234264445725339,0.547364367646998,0,0,0,1.20990716048664,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,7.66479528401834,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0.423366660328922,0,0,0,0,0,0,0,0,0,0.236417121897595,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.129282956361551,0,0,0,1.06787412567695,0,0.828478110694391,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,5.39965968808311,0.746842107858986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,1.61327582578091,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540219106755613,0.437119121007915,0,0,0,0,0,0.4226557275834,0,1.97366227757693,0.709036767709349,0.0999411559249289,0,0,0,0,0.458729283404541,0.143339583151451,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0.639701945702943,0.23806443146374,3.22944549180031,3.28995985768047,0,0,0,0,0,0.606168477131288,0.286888821570705,0,0,0,0,0,0,0.122241444182866,0,0,3.22038069745642,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0.458480434487708,0.57470412614962,0.393553906568396,1.18009283054671,3.0706351847777,0.464448369948228,0,0,0,0.154934401160603,0,4.9912074686924,0.553995408531877,1.40381113229099,0.651032612147555,0,0.32389366601898,0,0.290796477559129,0.377875943688809,0,0,0,0,0.28769239232215,0.256160706529101,0.236482229888585,0,0,0,0.376484679085209,0.272906150057846,0,0.918251677112708,0.320929027076094,0,0,0,0,0,0.56738522469114,0.622822248995575,0.251248665256743,0,0,0,0.368277635987565,0.316462387440884,0,0.212604299965044,0,0,0,0,0,0,0,10.5597746676794,7.09980194640771,6.22656477704488,9.38806489646316,7.20712776664822,6.32227683949932,7.27149360063348,13.3567525634951,11.9534723512984,2.34894875748376,5.73409842187843,3.96513985737078,2.80254281490768,3.95076127162616,1.7703879310245,5.50215067848831,4.93443597598822,1.33749196312542,2.28145586643513,4.2610302516126,1.94826728407911,12.812202541795,6.48132996444642,2.21533894583621,3.5204502289452,2.0494611156108,4.1618991219161,5.91976456573234,10.2249506580764,4.05724320029073,2.81744470007915,1.07016331235885,1.04535523804977,10.9910062416639,11.4966148080576,15.4632350467183,11.3858861408776,9.875527844047,9.76625180784628,8.55406840003537,4.9689789295665,6.2713439465665,7.49584359314075,11.6020853501568,11.4957919568947,7.4594494993151,5.88368430723716,6.37227377084316,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.94633578946371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,6.30498432646167,3.88129634747131,5.64709359630893,0,0,0,0,0,0.749007023947182,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86091223510599,0.862856803274467,4.58928498554811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09883357782012,0.660075999364704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,1.52234282769651,3.0585488285695,0.569647187174163,4.04994018278241,3.70226045777575,3.24236655596359,3.7802200606668,5.55187623405989,0,0,0,0.371606350251437,1.87549976869378,1.56512055366511,9.56557636372934,21.9537308576098,3.63860203251497,0.423347165447766,0.973865820823666,0.561594356226918,1.36940807419915,0,0,7.27954644546894,2.40882112655549,3.02699560786571,0.851692475380653,1.37402137902306,0,0,0,0.586164286206121,0,0,9.46594874665941,7.32758329595204,1.4098700508785,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,1.93398740871803,0,0,0.615424027305347,0,0,0,0,0.394573622547734,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.17546385565892,0.784901281975124,0.332423363800313,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0,0,0,0,0,0,0.234264445725339,0.547364367646998,0,0,0,1.20990716048664,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,7.66479528401834,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0.423366660328922,0,0,0,0,0,0,0,0,0,0.236417121897595,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.129282956361551,0,0,0,1.06787412567695,0,0.828478110694391,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,5.39965968808311,0.746842107858986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,1.61327582578091,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540219106755613,0.437119121007915,0,0,0,0,0,0.4226557275834,0,1.97366227757693,0.709036767709349,0.0999411559249289,0,0,0,0,0.458729283404541,0.143339583151451,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0.639701945702943,0.23806443146374,3.22944549180031,3.28995985768047,0,0,0,0,0,0.606168477131288,0.286888821570705,0,0,0,0,0,0,0.122241444182866,0,0,3.22038069745642,0 | ||
|short_description=p11@ITGA4 | |short_description=p11@ITGA4 | ||
}} | }} |
Latest revision as of 21:03, 18 September 2015
Short description: | p11@ITGA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_ITGA4_5end |
Coexpression cluster: | C57_Neutrophils_Eosinophils_Whole_CD4_CD8_CD19_Natural |
Association with transcript: | 115bp_to_ENST00000425522, NM_000885, uc002unt.2, uc002unu.2, uc010zfl.1_5end |
EntrezGene: | ITGA4 |
HGNC: | 6140 |
UniProt: | E7ESG7P13612 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.30e-53 | 52 |
lymphocyte | 5.49e-52 | 53 |
common lymphoid progenitor | 5.49e-52 | 53 |
T cell | 3.30e-37 | 25 |
pro-T cell | 3.30e-37 | 25 |
mature alpha-beta T cell | 5.25e-35 | 18 |
alpha-beta T cell | 5.25e-35 | 18 |
immature T cell | 5.25e-35 | 18 |
mature T cell | 5.25e-35 | 18 |
immature alpha-beta T cell | 5.25e-35 | 18 |
hematopoietic stem cell | 1.61e-28 | 168 |
hematopoietic cell | 2.67e-26 | 177 |
B cell | 3.90e-26 | 14 |
CD8-positive, alpha-beta T cell | 1.38e-25 | 11 |
hematopoietic oligopotent progenitor cell | 5.16e-25 | 161 |
hematopoietic multipotent progenitor cell | 5.16e-25 | 161 |
nongranular leukocyte | 1.92e-21 | 115 |
leukocyte | 5.09e-21 | 136 |
hematopoietic lineage restricted progenitor cell | 1.08e-17 | 120 |
lymphocyte of B lineage | 8.41e-14 | 24 |
pro-B cell | 8.41e-14 | 24 |
CD4-positive, alpha-beta T cell | 2.13e-13 | 6 |
naive T cell | 8.29e-08 | 3 |
natural killer cell | 1.20e-07 | 3 |
pro-NK cell | 1.20e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.67e-12 | 15 |
haemolymphatic fluid | 1.67e-12 | 15 |
organism substance | 1.67e-12 | 15 |
Ontology term | p-value | n |
---|---|---|
leukemia | 6.09e-08 | 39 |
hematologic cancer | 2.19e-07 | 51 |
immune system cancer | 2.19e-07 | 51 |