FFCP PHASE1:Hg19::chr2:176957443..176957457,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3239 | |EntrezGene=3239 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5136 | |HGNC=5136 | ||
|TSSclassifier=strong | |||
|UniProt=P35453 | |UniProt=P35453 | ||
|association_with_transcript=-74bp_to_NM_000523,uc002ukf.1_5end | |association_with_transcript=-74bp_to_NM_000523,uc002ukf.1_5end | ||
|cluster_id=chr2:176957443..176957457,+ | |||
|description=CAGE_peak_1_at_HOXD13_5end | |description=CAGE_peak_1_at_HOXD13_5end | ||
|id=chr2:176957443..176957457,+ | |id=chr2:176957443..176957457,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002553;7.85e-09;1!CL:0000333;8.05e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,8.15e-09,1 | |||
|ontology_enrichment_development_v019=UBERON:0004874;1.42e-08;1!UBERON:0000358;1.91e-08;1!UBERON:0005754;3.17e-08;1 | |||
|ontology_enrichment_disease=DOID:0050687!1.70e-13!143;DOID:162!1.45e-12!235;DOID:14566!4.60e-12!239;DOID:3095!5.32e-09!22;DOID:2994!5.32e-09!22;DOID:1115!1.58e-07!20;DOID:171!2.47e-07!10;DOID:305!4.96e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.02e-20;22!DOID:2994;2.02e-20;22!DOID:171;1.33e-18;10!DOID:1115;7.67e-09;20 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.00e-20,22;DOID:2994,2.00e-20,22;DOID:171,1.33e-18,10;DOID:0050687,7.75e-10,143;DOID:1115,7.80e-09,20 | |||
|ontology_enrichment_uberon=UBERON:0000059!2.28e-08!11;UBERON:0000002!1.93e-07!6;UBERON:0001560!1.93e-07!6;UBERON:0001155!3.19e-07!9 | |ontology_enrichment_uberon=UBERON:0000059!2.28e-08!11;UBERON:0000002!1.93e-07!6;UBERON:0001560!1.93e-07!6;UBERON:0001155!3.19e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0002050;4.45e-24;5!UBERON:0005423;4.45e-24;5!UBERON:0002346;1.17e-17;4!UBERON:0000923;1.17e-17;4!UBERON:0010316;1.17e-17;4!UBERON:0005291;1.17e-17;4!UBERON:0000002;3.85e-11;6!UBERON:0001560;3.85e-11;6!UBERON:0003135;1.18e-10;11!UBERON:0000473;1.26e-08;8!UBERON:0000989;1.42e-08;1!UBERON:0008811;1.42e-08;1!UBERON:0005795;1.91e-08;1!UBERON:0000996;1.91e-08;1!UBERON:0001052;2.38e-08;4!UBERON:0003133;3.08e-08;44!UBERON:0000998;3.17e-08;1!UBERON:0006868;3.17e-08;1!UBERON:0004175;3.31e-08;21!UBERON:0003101;5.11e-08;22!UBERON:0000079;5.11e-08;22!UBERON:0000922;3.78e-07;49!UBERON:0004907;7.71e-07;5!UBERON:0000013;8.05e-07;5!UBERON:0002410;8.05e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000002,4.20e-11,6;UBERON:0001560,4.20e-11,6;UBERON:0003135,1.12e-10,11;UBERON:0000473,1.18e-08,8;UBERON:0000989,1.48e-08,1;UBERON:0008811,1.48e-08,1;UBERON:0006258,1.48e-08,1;UBERON:0005876,1.48e-08,1;UBERON:0004874,1.48e-08,1;UBERON:0000996,1.59e-08,1;UBERON:0005156,2.13e-08,59;UBERON:0000990,2.13e-08,59;UBERON:0003133,2.18e-08,48;UBERON:0001052,2.21e-08,4;UBERON:0000998,2.64e-08,1;UBERON:0006868,2.64e-08,1;UBERON:0003101,4.95e-08,22;UBERON:0000079,4.95e-08,22;UBERON:0004175,7.12e-07,25;UBERON:0004907,7.28e-07,5;UBERON:0000013,7.94e-07,5;UBERON:0002410,7.94e-07,5 | |||
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| ||
|short_description=p1@HOXD13 | |short_description=p1@HOXD13 | ||
}} | }} |
Latest revision as of 08:36, 18 September 2015
Short description: | p1@HOXD13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXD13_5end |
Coexpression cluster: | NA |
Association with transcript: | -74bp_to_NM_000523, uc002ukf.1_5end |
EntrezGene: | HOXD13 |
HGNC: | 5136 |
UniProt: | P35453 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 8.15e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
uterine cervix | 4.20e-11 | 6 |
neck of organ | 4.20e-11 | 6 |
male reproductive organ | 1.12e-10 | 11 |
testis | 1.18e-08 | 8 |
penis | 1.48e-08 | 1 |
intromittent organ | 1.48e-08 | 1 |
lateral plate mesenchyme | 1.48e-08 | 1 |
undifferentiated genital tubercle | 1.48e-08 | 1 |
somatopleure | 1.48e-08 | 1 |
vagina | 1.59e-08 | 1 |
reproductive structure | 2.13e-08 | 59 |
reproductive system | 2.13e-08 | 59 |
reproductive organ | 2.18e-08 | 48 |
rectum | 2.21e-08 | 4 |
seminal vesicle | 2.64e-08 | 1 |
seminal fluid secreting gland | 2.64e-08 | 1 |
male organism | 4.95e-08 | 22 |
male reproductive system | 4.95e-08 | 22 |
internal genitalia | 7.12e-07 | 25 |
lower digestive tract | 7.28e-07 | 5 |
sympathetic nervous system | 7.94e-07 | 5 |
autonomic nervous system | 7.94e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.00e-20 | 22 |
germ cell cancer | 2.00e-20 | 22 |
neuroectodermal tumor | 1.33e-18 | 10 |
cell type cancer | 7.75e-10 | 143 |
sarcoma | 7.80e-09 | 20 |