FFCP PHASE1:Hg19::chr8:133637661..133637671,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23639 | |EntrezGene=23639 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16725 | |HGNC=16725 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-28bp_to_ENST00000522789_5end | |association_with_transcript=-28bp_to_ENST00000522789_5end | ||
|cluster_id=chr8:133637661..133637671,- | |||
|coexpression_cluster_id=C45 | |||
|description=CAGE_peak_9_at_LRRC6_5end | |description=CAGE_peak_9_at_LRRC6_5end | ||
|id=chr8:133637661..133637671,- | |id=chr8:133637661..133637671,- | ||
|ontology_enrichment_celltype=CL:0000039!2.93e-26!7;CL:0000586!2.93e-26!7;CL:0002322!3.62e-20!5 | |ontology_enrichment_celltype=CL:0000039!2.93e-26!7;CL:0000586!2.93e-26!7;CL:0002322!3.62e-20!5 | ||
|ontology_enrichment_celltype_v019=CL:0000039;4.97e-90;7!CL:0000586;4.97e-90;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,7.02e-90,7;CL:0000586,7.02e-90,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.34e-63;10!UBERON:0005564;2.34e-63;10 | |||
|ontology_enrichment_disease=DOID:3095!1.61e-08!22;DOID:2994!1.61e-08!22;DOID:4468!8.52e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.45e-29;22!DOID:2994;2.45e-29;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.73e-29,22;DOID:2994,2.73e-29,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!2.99e-35!8;UBERON:0003135!1.17e-25!11;UBERON:0002771!1.32e-15!3;UBERON:0000991!1.98e-13!21;UBERON:0009196!1.98e-13!21;UBERON:0009117!1.98e-13!21;UBERON:0005564!1.98e-13!21;UBERON:0001950!4.90e-13!20;UBERON:0004176!8.15e-13!22;UBERON:0003101!8.15e-13!22;UBERON:0000079!8.15e-13!22;UBERON:0002619!6.74e-12!22;UBERON:0000956!1.62e-10!25;UBERON:0000203!1.62e-10!25;UBERON:0002780!4.21e-09!41;UBERON:0001890!4.21e-09!41;UBERON:0006240!4.21e-09!41;UBERON:0003080!7.00e-09!42;UBERON:0001869!2.91e-08!32;UBERON:0000200!2.91e-08!6;UBERON:0003133!4.75e-08!48;UBERON:0002791!5.13e-08!33;UBERON:0002020!8.77e-08!34;UBERON:0003528!8.77e-08!34;UBERON:0001893!8.77e-08!34;UBERON:0000007!6.07e-07!2;UBERON:0003127!6.80e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.40e-79;8!UBERON:0003135;1.07e-57;11!UBERON:0000991;1.08e-30;21!UBERON:0003101;2.45e-29;22!UBERON:0000079;2.45e-29;22!UBERON:0002323;9.63e-14;45!UBERON:0003133;2.62e-11;44!UBERON:0000922;6.34e-11;49!UBERON:0002021;3.10e-09;5!UBERON:0002553;5.48e-09;52!UBERON:0004458;8.00e-08;48!UBERON:0005156;2.02e-07;59!UBERON:0000990;2.02e-07;59 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.66e-79,8;UBERON:0003135,1.34e-57,11;UBERON:0000991,1.22e-30,21;UBERON:0009196,1.22e-30,21;UBERON:0009117,1.22e-30,21;UBERON:0005564,1.22e-30,21;UBERON:0004176,2.73e-29,22;UBERON:0003101,2.73e-29,22;UBERON:0000079,2.73e-29,22;UBERON:0002323,1.96e-14,46;UBERON:0003133,7.29e-14,48;UBERON:0004458,1.35e-13,49;UBERON:0003886,2.11e-12,54;UBERON:0005156,2.07e-11,59;UBERON:0000990,2.07e-11,59;UBERON:0002553,4.65e-11,61;UBERON:0002021,2.74e-09,5 | |||
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|short_description=p9@LRRC6 | |short_description=p9@LRRC6 | ||
}} | }} |
Latest revision as of 10:53, 16 September 2015
Short description: | p9@LRRC6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_LRRC6_5end |
Coexpression cluster: | C45_testicular_choriocarcinoma_H9_teratocarcinoma_Wilms_pancreatic_iPS |
Association with transcript: | -28bp_to_ENST00000522789_5end |
EntrezGene: | LRRC6 |
HGNC: | 16725 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 7.02e-90 | 7 |
germ cell | 7.02e-90 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 8.66e-79 | 8 |
male reproductive organ | 1.34e-57 | 11 |
gonad | 1.22e-30 | 21 |
indifferent external genitalia | 1.22e-30 | 21 |
indifferent gonad | 1.22e-30 | 21 |
gonad primordium | 1.22e-30 | 21 |
external genitalia | 2.73e-29 | 22 |
male organism | 2.73e-29 | 22 |
male reproductive system | 2.73e-29 | 22 |
body cavity | 1.96e-14 | 46 |
reproductive organ | 7.29e-14 | 48 |
body cavity or lining | 1.35e-13 | 49 |
body cavity precursor | 2.11e-12 | 54 |
reproductive structure | 2.07e-11 | 59 |
reproductive system | 2.07e-11 | 59 |
anatomical cavity | 4.65e-11 | 61 |
occipital lobe | 2.74e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.73e-29 | 22 |
germ cell cancer | 2.73e-29 | 22 |