FFCP PHASE1:Hg19::chr14:106329470..106329481,-: Difference between revisions
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|id=chr14:106329470..106329481,-
|short_description=p1@IGHJ6
|description=CAGE_peak_1_at_IGHJ6_5end
|association_with_transcript=-2bp_to_ENST00000390560_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=5540 | |HGNC=5540 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-2bp_to_ENST00000390560_5end | |||
|cluster_id=chr14:106329470..106329481,- | |||
|coexpression_cluster_id=C650 | |||
|description=CAGE_peak_1_at_IGHJ6_5end | |||
|id=chr14:106329470..106329481,- | |||
|ontology_enrichment_celltype=CL:0000945!5.67e-77!24;CL:0000826!5.67e-77!24;CL:0000236!8.50e-43!14;CL:0000542!1.72e-34!53;CL:0000051!1.72e-34!53;CL:0000838!3.82e-32!52;CL:0000037!1.19e-14!172;CL:0000566!1.19e-14!172;CL:0002087!3.57e-14!119;CL:0000988!2.09e-13!182;CL:0002032!2.76e-12!165;CL:0000837!2.76e-12!165;CL:0000738!3.55e-12!140;CL:0000817!2.28e-11!3;CL:0002031!5.20e-11!124;CL:0000785!4.75e-08!2;CL:0000955!4.75e-08!2;CL:0000818!4.75e-08!2;CL:0000954!4.75e-08!2;CL:0000816!4.75e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0000945;3.94e-121;24!CL:0000236;6.56e-68;13!CL:0000542;1.76e-36;53!CL:0000946;6.91e-09;1!CL:0000786;6.91e-09;1!CL:0000817;1.65e-08;1!CL:0002087;3.48e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,5.62e-121,24;CL:0000826,5.62e-121,24;CL:0000236,4.70e-75,14;CL:0000542,1.66e-58,53;CL:0000051,1.66e-58,53;CL:0000838,5.59e-54,52;CL:0002087,1.03e-24,115;CL:0002031,3.89e-21,120;CL:0000738,2.42e-20,136;CL:0002032,1.90e-18,161;CL:0000837,1.90e-18,161;CL:0000037,1.61e-17,168;CL:0000988,1.96e-16,177;CL:0000817,7.67e-11,3;CL:0000946,5.70e-09,1;CL:0000786,5.70e-09,1;CL:0000980,5.70e-09,1 | |||
|ontology_enrichment_development_v019=CL:0000051;1.76e-36;53!UBERON:0006298;1.65e-08;1 | |||
|ontology_enrichment_disease=DOID:0060058!5.53e-12!10;DOID:2531!3.46e-10!51;DOID:0060083!3.46e-10!51 | |||
|ontology_enrichment_disease_v019=DOID:4960;6.91e-09;1!DOID:0070004;6.91e-09;1!DOID:12603;1.01e-08;1!DOID:2355;1.01e-08;1!DOID:0060058;4.65e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:4960,8.36e-09,1;DOID:0070004,8.36e-09,1;DOID:12603,9.74e-09,1;DOID:2355,1.13e-08,1;DOID:0060058,5.46e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0002106!4.00e-11!3;UBERON:0004854!4.00e-11!3;UBERON:0009034!4.00e-11!3;UBERON:0002095!4.00e-11!3;UBERON:0004782!4.00e-11!3;UBERON:0003281!4.00e-11!3;UBERON:0009664!4.00e-11!3;UBERON:0002296!4.00e-11!3;UBERON:0005602!4.00e-11!3;UBERON:0001179!4.00e-11!3;UBERON:0006293!4.00e-11!3;UBERON:0004177!4.67e-08!7;UBERON:0007023!5.22e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002372;1.65e-08;1!UBERON:0000029;1.65e-08;1!UBERON:0001736;1.65e-08;1!UBERON:0001961;1.65e-08;1!UBERON:0001744;1.65e-08;1!UBERON:0001042;1.65e-08;1!UBERON:0001735;1.65e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000029,1.22e-08,1;UBERON:0001736,1.42e-08,1;UBERON:0006298,1.42e-08,1;UBERON:0002372,1.65e-08,1;UBERON:0001961,1.65e-08,1;UBERON:0001744,1.65e-08,1;UBERON:0001735,1.65e-08,1 | |||
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| ||
|short_description=p1@IGHJ6 | |||
}} | }} |
Latest revision as of 21:09, 18 September 2015
Short description: | p1@IGHJ6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_IGHJ6_5end |
Coexpression cluster: | C650_CD19_B_lymphoma_xeroderma_splenic_Burkitt_plasma |
Association with transcript: | -2bp_to_ENST00000390560_5end |
EntrezGene: | NA |
HGNC: | 5540 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 5.62e-121 | 24 |
pro-B cell | 5.62e-121 | 24 |
B cell | 4.70e-75 | 14 |
lymphocyte | 1.66e-58 | 53 |
common lymphoid progenitor | 1.66e-58 | 53 |
lymphoid lineage restricted progenitor cell | 5.59e-54 | 52 |
nongranular leukocyte | 1.03e-24 | 115 |
hematopoietic lineage restricted progenitor cell | 3.89e-21 | 120 |
leukocyte | 2.42e-20 | 136 |
hematopoietic oligopotent progenitor cell | 1.90e-18 | 161 |
hematopoietic multipotent progenitor cell | 1.90e-18 | 161 |
hematopoietic stem cell | 1.61e-17 | 168 |
hematopoietic cell | 1.96e-16 | 177 |
precursor B cell | 7.67e-11 | 3 |
antibody secreting cell | 5.70e-09 | 1 |
plasma cell | 5.70e-09 | 1 |
plasmablast | 5.70e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
lymph node | 1.22e-08 | 1 |
submandibular gland | 1.42e-08 | 1 |
submandibular gland primordium | 1.42e-08 | 1 |
tonsil | 1.65e-08 | 1 |
mucosa-associated lymphoid tissue | 1.65e-08 | 1 |
lymphoid tissue | 1.65e-08 | 1 |
tonsillar ring | 1.65e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
bone marrow cancer | 8.36e-09 | 1 |
myeloma | 8.36e-09 | 1 |
acute leukemia | 9.74e-09 | 1 |
anemia | 1.13e-08 | 1 |
lymphoma | 5.46e-07 | 10 |