FFCP PHASE1:Hg19::chr2:128400774..128400781,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55679 | |EntrezGene=55679 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16084 | |HGNC=16084 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z4I2 | |UniProt=Q7Z4I2 | ||
|association_with_transcript=21bp_to_ENST00000409286_5end | |association_with_transcript=21bp_to_ENST00000409286_5end | ||
|cluster_id=chr2:128400774..128400781,- | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_51_at_LIMS2_5end | |description=CAGE_peak_51_at_LIMS2_5end | ||
|id=chr2:128400774..128400781,- | |id=chr2:128400774..128400781,- | ||
|ontology_enrichment_celltype=CL:0000148!2.04e-36!10;CL:0000541!2.04e-36!10;CL:0000147!6.20e-26!14;CL:0000710!4.71e-18!20;CL:0002567!1.00e-14!3;CL:0000075!2.85e-13!27;CL:0002566!9.57e-12!1;CL:0002077!8.80e-11!33;CL:0000325!4.70e-09!39;CL:0000333!3.60e-08!41 | |ontology_enrichment_celltype=CL:0000148!2.04e-36!10;CL:0000541!2.04e-36!10;CL:0000147!6.20e-26!14;CL:0000710!4.71e-18!20;CL:0002567!1.00e-14!3;CL:0000075!2.85e-13!27;CL:0002566!9.57e-12!1;CL:0002077!8.80e-11!33;CL:0000325!4.70e-09!39;CL:0000333!3.60e-08!41 | ||
|ontology_enrichment_celltype_v019=CL:0000148;5.78e-79;10!CL:0000147;9.12e-57;14!CL:0002566;2.42e-50;1!CL:0000710;4.28e-40;20!CL:0000075;5.44e-30;27!CL:0002077;1.30e-20;34!CL:0002567;6.76e-18;3!CL:0000150;8.61e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,5.79e-79,10;CL:0000541,5.79e-79,10;CL:0000147,9.13e-57,14;CL:0002566,2.42e-50,1;CL:0000710,4.28e-40,20;CL:0000075,5.44e-30,27;CL:0002077,4.91e-24,34;CL:0000333,3.24e-19,41;CL:0002567,6.76e-18,3;CL:0000133,7.99e-14,59;CL:0000221,1.50e-11,72;CL:0000150,8.37e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000133;1.25e-07;59!CL:0000221;2.84e-07;72 | |||
|ontology_enrichment_disease=DOID:178!3.28e-11!1;DOID:326!3.28e-11!1;DOID:3978!3.28e-11!1;DOID:3394!3.28e-11!1;DOID:5844!3.28e-11!1 | |ontology_enrichment_disease=DOID:178!3.28e-11!1;DOID:326!3.28e-11!1;DOID:3978!3.28e-11!1;DOID:3394!3.28e-11!1;DOID:5844!3.28e-11!1 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002240!2.59e-14!3;UBERON:0001874!3.63e-11!1;UBERON:0007190!4.44e-11!1;UBERON:0002336!4.91e-11!1;UBERON:0001018!4.91e-11!1;UBERON:0002473!4.91e-11!1;UBERON:0005340!4.91e-11!1;UBERON:0002316!4.91e-11!1;UBERON:0003544!4.91e-11!1;UBERON:0001020!4.91e-11!1;UBERON:0005970!4.91e-11!1;UBERON:0002437!4.91e-11!1;UBERON:0001049!6.19e-10!57;UBERON:0005068!6.19e-10!57;UBERON:0006241!6.19e-10!57;UBERON:0007135!6.19e-10!57;UBERON:0001893!1.04e-09!34;UBERON:0005174!5.95e-09!5;UBERON:0001137!5.95e-09!5;UBERON:0002780!5.07e-08!41;UBERON:0001890!5.07e-08!41;UBERON:0006240!5.07e-08!41;UBERON:0003075!5.20e-08!86;UBERON:0007284!5.20e-08!86;UBERON:0005743!6.62e-08!86;UBERON:0003080!7.97e-08!42;UBERON:0002346!1.32e-07!90;UBERON:0001869!2.31e-07!32;UBERON:0002791!3.89e-07!33;UBERON:0003056!4.11e-07!61;UBERON:0000073!4.63e-07!94;UBERON:0001016!4.63e-07!94 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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|short_description=p51@LIMS2 | |short_description=p51@LIMS2 | ||
}} | }} |
Latest revision as of 20:59, 16 September 2015
Short description: | p51@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_51_at_LIMS2_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | 21bp_to_ENST00000409286_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | Q7Z4I2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 5.79e-79 | 10 |
melanoblast | 5.79e-79 | 10 |
pigment cell | 9.13e-57 | 14 |
dark melanocyte | 2.42e-50 | 1 |
neurecto-epithelial cell | 4.28e-40 | 20 |
columnar/cuboidal epithelial cell | 5.44e-30 | 27 |
ecto-epithelial cell | 4.91e-24 | 34 |
migratory neural crest cell | 3.24e-19 | 41 |
light melanocyte | 6.76e-18 | 3 |
neurectodermal cell | 7.99e-14 | 59 |
ectodermal cell | 1.50e-11 | 72 |
glandular epithelial cell | 8.37e-07 | 9 |