FFCP PHASE1:Hg19::chr2:128400745..128400763,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55679 | |EntrezGene=55679 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16084 | |HGNC=16084 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z4I2 | |UniProt=Q7Z4I2 | ||
|association_with_transcript=39bp_to_ENST00000409286_5end | |association_with_transcript=39bp_to_ENST00000409286_5end | ||
|cluster_id=chr2:128400745..128400763,- | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_23_at_LIMS2_5end | |description=CAGE_peak_23_at_LIMS2_5end | ||
|id=chr2:128400745..128400763,- | |id=chr2:128400745..128400763,- | ||
|ontology_enrichment_celltype=CL:0000148!5.58e-34!10;CL:0000541!5.58e-34!10;CL:0000147!6.53e-24!14;CL:0002567!3.25e-17!3;CL:0000710!2.37e-16!20;CL:0000325!5.14e-12!39;CL:0000075!8.95e-12!27;CL:0002077!9.34e-12!33;CL:0002566!5.90e-07!1;CL:0000333!6.44e-07!41 | |ontology_enrichment_celltype=CL:0000148!5.58e-34!10;CL:0000541!5.58e-34!10;CL:0000147!6.53e-24!14;CL:0002567!3.25e-17!3;CL:0000710!2.37e-16!20;CL:0000325!5.14e-12!39;CL:0000075!8.95e-12!27;CL:0002077!9.34e-12!33;CL:0002566!5.90e-07!1;CL:0000333!6.44e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:0000148;3.69e-96;10!CL:0000147;9.69e-69;14!CL:0002567;1.49e-59;3!CL:0000710;3.75e-48;20!CL:0000075;1.11e-35;27!CL:0002077;5.74e-25;34!CL:0002566;1.88e-21;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,3.96e-96,10;CL:0000541,3.96e-96,10;CL:0000147,1.02e-68,14;CL:0002567,1.49e-59,3;CL:0000710,3.89e-48,20;CL:0000075,1.14e-35,27;CL:0002077,2.54e-28,34;CL:0000333,2.22e-22,41;CL:0002566,1.88e-21,1;CL:0000133,9.81e-16,59;CL:0000221,6.18e-13,72 | |||
|ontology_enrichment_development_v019=CL:0000133;1.10e-08;59!UBERON:0003056;5.93e-08;3!CL:0000221;2.59e-07;72 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.03e-27!57;UBERON:0005068!3.03e-27!57;UBERON:0006241!3.03e-27!57;UBERON:0007135!3.03e-27!57;UBERON:0002616!3.04e-23!59;UBERON:0000955!1.68e-21!69;UBERON:0006238!1.68e-21!69;UBERON:0003075!4.09e-21!86;UBERON:0007284!4.09e-21!86;UBERON:0005743!7.58e-21!86;UBERON:0002346!5.55e-20!90;UBERON:0001017!1.06e-19!82;UBERON:0000073!1.76e-18!94;UBERON:0001016!1.76e-18!94;UBERON:0003076!1.13e-15!15;UBERON:0003057!1.13e-15!15;UBERON:0000988!1.27e-15!3;UBERON:0002298!1.43e-15!8;UBERON:0002780!5.30e-15!41;UBERON:0001890!5.30e-15!41;UBERON:0006240!5.30e-15!41;UBERON:0003080!1.35e-14!42;UBERON:0004733!1.52e-14!12;UBERON:0002028!1.52e-14!12;UBERON:0007277!1.52e-14!12;UBERON:0004732!2.20e-13!13;UBERON:0007023!3.28e-13!115;UBERON:0002020!7.79e-13!34;UBERON:0003528!7.79e-13!34;UBERON:0001893!1.02e-12!34;UBERON:0000033!7.82e-12!123;UBERON:0003056!3.06e-11!61;UBERON:0001950!3.85e-11!20;UBERON:0002148!4.05e-11!2;UBERON:0009662!4.05e-11!2;UBERON:0000153!4.29e-11!129;UBERON:0007811!4.29e-11!129;UBERON:0001869!4.69e-11!32;UBERON:0002791!1.11e-10!33;UBERON:0004121!1.31e-10!169;UBERON:0000924!2.96e-10!173;UBERON:0006601!2.96e-10!173;UBERON:0002619!4.29e-10!22;UBERON:0002680!4.54e-09!9;UBERON:0001895!4.54e-09!9;UBERON:0010092!4.54e-09!9;UBERON:0000956!7.96e-09!25;UBERON:0000203!7.96e-09!25;UBERON:0001896!1.04e-07!3;UBERON:0005290!1.04e-07!3;UBERON:0010096!1.04e-07!3;UBERON:0006331!1.08e-07!3 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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|short_description=p23@LIMS2 | |short_description=p23@LIMS2 | ||
}} | }} |
Latest revision as of 20:59, 16 September 2015
Short description: | p23@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_23_at_LIMS2_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | 39bp_to_ENST00000409286_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | Q7Z4I2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 3.96e-96 | 10 |
melanoblast | 3.96e-96 | 10 |
pigment cell | 1.02e-68 | 14 |
light melanocyte | 1.49e-59 | 3 |
neurecto-epithelial cell | 3.89e-48 | 20 |
columnar/cuboidal epithelial cell | 1.14e-35 | 27 |
ecto-epithelial cell | 2.54e-28 | 34 |
migratory neural crest cell | 2.22e-22 | 41 |
dark melanocyte | 1.88e-21 | 1 |
neurectodermal cell | 9.81e-16 | 59 |
ectodermal cell | 6.18e-13 | 72 |