FFCP PHASE1:Hg19::chr7:93516672..93516693,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:93516672..93516693,+ | |||
|coexpression_cluster_id=C378 | |||
|description=CAGE_peak_at_chr7:93516672..93516693,+ | |description=CAGE_peak_at_chr7:93516672..93516693,+ | ||
|id=chr7:93516672..93516693,+ | |id=chr7:93516672..93516693,+ | ||
|ontology_enrichment_celltype=CL:0000680!1.20e-27!57;CL:0000056!1.20e-27!57;CL:0000355!1.20e-27!57;CL:0000192!2.70e-27!42;CL:0000514!2.70e-27!42;CL:0000187!4.56e-27!54;CL:0000359!1.49e-25!32;CL:0000393!1.77e-25!60;CL:0000211!1.77e-25!60;CL:0000183!1.43e-23!59;CL:0000055!8.71e-22!180;CL:0000222!9.55e-17!119;CL:0002494!2.50e-11!16;CL:0002539!6.95e-09!10;CL:0000048!8.34e-09!430;CL:0000723!2.69e-08!436;CL:0002595!6.75e-08!5;CL:0000034!1.19e-07!444;CL:0000220!3.28e-07!246;CL:0000548!3.55e-07!679;CL:0000004!3.55e-07!679;CL:0000255!3.55e-07!679;CL:0002321!5.13e-07!248;CL:0000057!5.23e-07!75;CL:0000144!5.28e-07!625;CL:0000012!5.78e-07!682 | |ontology_enrichment_celltype=CL:0000680!1.20e-27!57;CL:0000056!1.20e-27!57;CL:0000355!1.20e-27!57;CL:0000192!2.70e-27!42;CL:0000514!2.70e-27!42;CL:0000187!4.56e-27!54;CL:0000359!1.49e-25!32;CL:0000393!1.77e-25!60;CL:0000211!1.77e-25!60;CL:0000183!1.43e-23!59;CL:0000055!8.71e-22!180;CL:0000222!9.55e-17!119;CL:0002494!2.50e-11!16;CL:0002539!6.95e-09!10;CL:0000048!8.34e-09!430;CL:0000723!2.69e-08!436;CL:0002595!6.75e-08!5;CL:0000034!1.19e-07!444;CL:0000220!3.28e-07!246;CL:0000548!3.55e-07!679;CL:0000004!3.55e-07!679;CL:0000255!3.55e-07!679;CL:0002321!5.13e-07!248;CL:0000057!5.23e-07!75;CL:0000144!5.28e-07!625;CL:0000012!5.78e-07!682 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.34e-23;32!CL:0000192;3.87e-20;43!CL:0002595;8.54e-17;5!CL:0002494;1.23e-14;16!CL:0000187;9.46e-12;55!CL:0000393;1.15e-08;61!CL:0000211;1.15e-08;61!CL:0000569;3.63e-08;4!CL:0002593;5.03e-08;2!CL:0002594;1.89e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,2.89e-26,43;CL:0000514,2.89e-26,43;CL:0000359,5.56e-24,32;CL:0000187,1.62e-21,55;CL:0000680,4.18e-20,58;CL:0000056,4.18e-20,58;CL:0000355,4.18e-20,58;CL:0000393,7.81e-19,61;CL:0000211,7.81e-19,61;CL:0002595,1.26e-16,5;CL:0002494,1.28e-14,16;CL:0000222,1.48e-09,121;CL:0000048,3.41e-08,427;CL:0000569,4.35e-08,4;CL:0000011,4.35e-08,4;CL:0002593,4.95e-08,2;CL:0000723,6.46e-08,433;CL:0000034,1.47e-07,441;CL:0002594,1.79e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000514;3.87e-20;43!CL:0000355;8.41e-10;58!CL:0000011;3.63e-08;4 | |||
|ontology_enrichment_disease=DOID:2394!1.36e-10!14;DOID:120!5.33e-10!27;DOID:193!5.94e-09!29 | |||
|ontology_enrichment_disease_v019=DOID:2394;3.44e-17;14!DOID:0060084;7.40e-11;3!DOID:127;7.40e-11;3!DOID:120;4.63e-10;27!DOID:193;3.18e-09;29!DOID:0060072;3.14e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.81e-17,14;DOID:0060084,8.05e-11,3;DOID:127,8.05e-11,3;DOID:120,4.09e-10,27;DOID:193,2.84e-09,29;DOID:0060072,3.34e-08,4 | |||
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|ontology_enrichment_uberon_v019=UBERON:0003834;8.54e-17;5!UBERON:0001533;8.54e-17;5!UBERON:0003513;1.18e-16;7!UBERON:0001637;4.06e-15;42!UBERON:0003509;4.06e-15;42!UBERON:0004572;4.06e-15;42!UBERON:0004573;6.78e-14;33!UBERON:0004571;6.78e-14;33!UBERON:0000992;1.37e-11;13!UBERON:0002118;1.52e-10;5!UBERON:0000948;3.68e-10;22!UBERON:0003134;7.93e-09;33!UBERON:0000991;8.05e-09;21!UBERON:0007100;9.84e-09;25!UBERON:0002119;2.19e-08;4!UBERON:0003100;4.97e-08;41!UBERON:0002456;5.03e-08;2!UBERON:0007500;1.28e-07;56!UBERON:0001981;1.28e-07;56!UBERON:0004537;1.28e-07;56!UBERON:0000474;1.67e-07;37!UBERON:0001310;1.89e-07;4!UBERON:0005406;3.13e-07;2 | |||
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| ||
|short_description=p@chr7:93516672..93516693,+ | |short_description=p@chr7:93516672..93516693,+ | ||
}} | }} |
Latest revision as of 12:36, 31 July 2015
Short description: | p@chr7:93516672..93516693, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:93516672..93516693, + |
Coexpression cluster: | C378_Smooth_mesenchymal_placenta_clear_leiomyoma_renal_Preadipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 2.89e-26 | 43 |
smooth muscle myoblast | 2.89e-26 | 43 |
vascular associated smooth muscle cell | 5.56e-24 | 32 |
muscle cell | 1.62e-21 | 55 |
muscle precursor cell | 4.18e-20 | 58 |
myoblast | 4.18e-20 | 58 |
multi-potent skeletal muscle stem cell | 4.18e-20 | 58 |
electrically responsive cell | 7.81e-19 | 61 |
electrically active cell | 7.81e-19 | 61 |
smooth muscle cell of the subclavian artery | 1.26e-16 | 5 |
cardiocyte | 1.28e-14 | 16 |
mesodermal cell | 1.48e-09 | 121 |
multi fate stem cell | 3.41e-08 | 427 |
cardiac mesenchymal cell | 4.35e-08 | 4 |
migratory trunk neural crest cell | 4.35e-08 | 4 |
smooth muscle cell of the internal thoracic artery | 4.95e-08 | 2 |
somatic stem cell | 6.46e-08 | 433 |
stem cell | 1.47e-07 | 441 |
smooth muscle cell of the umbilical artery | 1.79e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.81e-17 | 14 |
cell type benign neoplasm | 8.05e-11 | 3 |
leiomyoma | 8.05e-11 | 3 |
female reproductive organ cancer | 4.09e-10 | 27 |
reproductive organ cancer | 2.84e-09 | 29 |
benign neoplasm | 3.34e-08 | 4 |