FFCP PHASE1:Hg19::chr22:50683445..50683462,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=85378 | |EntrezGene=85378 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18127 | |HGNC=18127 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-24bp_to_ENST00000498611_5end | |association_with_transcript=-24bp_to_ENST00000498611_5end | ||
|cluster_id=chr22:50683445..50683462,- | |||
|description=CAGE_peak_2_at_TUBGCP6_5end | |description=CAGE_peak_2_at_TUBGCP6_5end | ||
|id=chr22:50683445..50683462,- | |id=chr22:50683445..50683462,- | ||
|ontology_enrichment_celltype=CL:0000838!2.95e-15!52;CL:0000542!3.07e-15!53;CL:0000051!3.07e-15!53;CL:0000084!1.73e-08!25;CL:0000827!1.73e-08!25;CL:0000945!2.10e-07!24;CL:0000826!2.10e-07!24;CL:0000791!9.01e-07!18;CL:0000789!9.01e-07!18;CL:0002420!9.01e-07!18;CL:0002419!9.01e-07!18;CL:0000790!9.01e-07!18 | |ontology_enrichment_celltype=CL:0000838!2.95e-15!52;CL:0000542!3.07e-15!53;CL:0000051!3.07e-15!53;CL:0000084!1.73e-08!25;CL:0000827!1.73e-08!25;CL:0000945!2.10e-07!24;CL:0000826!2.10e-07!24;CL:0000791!9.01e-07!18;CL:0000789!9.01e-07!18;CL:0002420!9.01e-07!18;CL:0002419!9.01e-07!18;CL:0000790!9.01e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000542;1.82e-09;53!CL:0000084;2.71e-08;25!CL:0000945;1.61e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.84e-15,52;CL:0000542,2.95e-15,53;CL:0000051,2.95e-15,53;CL:0000084,1.69e-08,25;CL:0000827,1.69e-08,25;CL:0000945,2.06e-07,24;CL:0000826,2.06e-07,24;CL:0000791,8.86e-07,18;CL:0000789,8.86e-07,18;CL:0002420,8.86e-07,18;CL:0002419,8.86e-07,18;CL:0000790,8.86e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000051;1.82e-09;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.61e-16!115;UBERON:0001049!3.94e-14!57;UBERON:0005068!3.94e-14!57;UBERON:0006241!3.94e-14!57;UBERON:0007135!3.94e-14!57;UBERON:0002780!8.13e-12!41;UBERON:0001890!8.13e-12!41;UBERON:0006240!8.13e-12!41;UBERON:0002346!1.68e-11!90;UBERON:0003080!2.03e-11!42;UBERON:0001017!6.33e-11!82;UBERON:0003075!1.13e-10!86;UBERON:0007284!1.13e-10!86;UBERON:0005743!1.96e-10!86;UBERON:0000073!4.01e-10!94;UBERON:0001016!4.01e-10!94;UBERON:0002616!5.54e-10!59;UBERON:0000955!6.58e-10!69;UBERON:0006238!6.58e-10!69;UBERON:0001893!8.12e-10!34;UBERON:0002791!1.09e-09!33;UBERON:0002020!1.18e-09!34;UBERON:0003528!1.18e-09!34;UBERON:0003056!1.72e-09!61;UBERON:0001869!5.59e-09!32;UBERON:0000956!3.04e-07!25;UBERON:0000203!3.04e-07!25;UBERON:0002619!5.08e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;3.85e-09;53!UBERON:0002616;3.85e-09;53!UBERON:0002780;4.06e-09;41!UBERON:0001890;4.06e-09;41!UBERON:0003528;5.54e-09;34!UBERON:0002020;5.54e-09;34!UBERON:0001893;9.57e-09;34!UBERON:0002791;1.82e-08;32!UBERON:0001869;2.24e-08;32!UBERON:0000956;2.34e-07;25!UBERON:0000203;2.34e-07;25!UBERON:0002619;6.42e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.62e-16,114;UBERON:0001049,1.60e-14,56;UBERON:0005068,1.60e-14,56;UBERON:0006241,1.60e-14,56;UBERON:0007135,1.60e-14,56;UBERON:0000073,3.78e-14,53;UBERON:0002616,3.78e-14,53;UBERON:0002346,3.15e-13,86;UBERON:0003075,2.32e-12,82;UBERON:0007284,2.32e-12,82;UBERON:0002780,7.89e-12,41;UBERON:0001890,7.89e-12,41;UBERON:0003080,7.89e-12,41;UBERON:0006240,7.89e-12,41;UBERON:0001017,3.22e-11,81;UBERON:0001016,8.20e-11,89;UBERON:0003056,3.03e-10,61;UBERON:0000955,3.27e-10,68;UBERON:0006238,3.27e-10,68;UBERON:0001893,7.92e-10,34;UBERON:0003528,1.15e-09,34;UBERON:0002020,1.15e-09,34;UBERON:0002791,2.76e-09,32;UBERON:0001869,5.46e-09,32;UBERON:0010371,2.77e-08,104;UBERON:0000956,2.99e-07,25;UBERON:0000203,2.99e-07,25;UBERON:0002619,5.00e-07,22 | |||
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| ||
|short_description=p2@TUBGCP6 | |short_description=p2@TUBGCP6 | ||
}} | }} |
Latest revision as of 19:37, 15 September 2015
Short description: | p2@TUBGCP6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TUBGCP6_5end |
Coexpression cluster: | NA |
Association with transcript: | -24bp_to_ENST00000498611_5end |
EntrezGene: | TUBGCP6 |
HGNC: | 18127 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.84e-15 | 52 |
lymphocyte | 2.95e-15 | 53 |
common lymphoid progenitor | 2.95e-15 | 53 |
T cell | 1.69e-08 | 25 |
pro-T cell | 1.69e-08 | 25 |
lymphocyte of B lineage | 2.06e-07 | 24 |
pro-B cell | 2.06e-07 | 24 |
mature alpha-beta T cell | 8.86e-07 | 18 |
alpha-beta T cell | 8.86e-07 | 18 |
immature T cell | 8.86e-07 | 18 |
mature T cell | 8.86e-07 | 18 |
immature alpha-beta T cell | 8.86e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.62e-16 | 114 |
neural tube | 1.60e-14 | 56 |
neural rod | 1.60e-14 | 56 |
future spinal cord | 1.60e-14 | 56 |
neural keel | 1.60e-14 | 56 |
regional part of nervous system | 3.78e-14 | 53 |
regional part of brain | 3.78e-14 | 53 |
neurectoderm | 3.15e-13 | 86 |
neural plate | 2.32e-12 | 82 |
presumptive neural plate | 2.32e-12 | 82 |
regional part of forebrain | 7.89e-12 | 41 |
forebrain | 7.89e-12 | 41 |
anterior neural tube | 7.89e-12 | 41 |
future forebrain | 7.89e-12 | 41 |
central nervous system | 3.22e-11 | 81 |
nervous system | 8.20e-11 | 89 |
pre-chordal neural plate | 3.03e-10 | 61 |
brain | 3.27e-10 | 68 |
future brain | 3.27e-10 | 68 |
telencephalon | 7.92e-10 | 34 |
brain grey matter | 1.15e-09 | 34 |
gray matter | 1.15e-09 | 34 |
regional part of telencephalon | 2.76e-09 | 32 |
cerebral hemisphere | 5.46e-09 | 32 |
ecto-epithelium | 2.77e-08 | 104 |
cerebral cortex | 2.99e-07 | 25 |
pallium | 2.99e-07 | 25 |
regional part of cerebral cortex | 5.00e-07 | 22 |