FFCP PHASE1:Hg19::chr13:48807307..48807333,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:48807307..48807333,+
|short_description=p2@ITM2B
|description=CAGE_peak_2_at_ITM2B_5end
|association_with_transcript=-5bp_to_ENST00000378549_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9445 | |EntrezGene=9445 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6174 | |HGNC=6174 | ||
|TSSclassifier=strong | |||
|UniProt=Q5W0A2 | |UniProt=Q5W0A2 | ||
|association_with_transcript=-5bp_to_ENST00000378549_5end | |||
|cluster_id=chr13:48807307..48807333,+ | |||
|coexpression_cluster_id=C3376 | |||
|description=CAGE_peak_2_at_ITM2B_5end | |||
|id=chr13:48807307..48807333,+ | |||
|ontology_enrichment_celltype=CL:0000766!2.66e-15!76;CL:0002057!3.36e-12!42;CL:0000839!1.08e-11!70;CL:0000557!1.84e-11!71;CL:0000860!9.60e-10!45;CL:0002194!1.08e-09!63;CL:0000576!1.08e-09!63;CL:0000040!1.08e-09!63;CL:0000559!1.08e-09!63;CL:0002009!2.28e-09!65 | |||
|ontology_enrichment_celltype_v019=CL:0000473;6.89e-10;39!CL:0000234;6.89e-10;39!CL:0000860;1.17e-09;33!CL:0002057;1.17e-09;33!CL:0000766;8.25e-09;69!CL:0000576;2.28e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.17e-17,72;CL:0000473,4.04e-14,48;CL:0000234,4.04e-14,48;CL:0000839,2.30e-13,66;CL:0000557,4.29e-13,67;CL:0000860,3.36e-12,42;CL:0002057,3.36e-12,42;CL:0002194,2.91e-11,59;CL:0000576,2.91e-11,59;CL:0000040,2.91e-11,59;CL:0000559,2.91e-11,59;CL:0002009,7.31e-11,61;CL:0000738,6.06e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;3.46e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.67e-36!115;UBERON:0002193!5.67e-12!112;UBERON:0002390!3.02e-11!102;UBERON:0003061!3.02e-11!102;UBERON:0001049!3.80e-10!57;UBERON:0005068!3.80e-10!57;UBERON:0006241!3.80e-10!57;UBERON:0007135!3.80e-10!57;UBERON:0002371!1.90e-09!80;UBERON:0002616!7.65e-09!59;UBERON:0000062!3.49e-08!511;UBERON:0003081!4.63e-08!216;UBERON:0001474!5.06e-08!86;UBERON:0002405!1.59e-07!115;UBERON:0004765!1.76e-07!101;UBERON:0001434!1.76e-07!101;UBERON:0003080!3.01e-07!42;UBERON:0000467!6.62e-07!625;UBERON:0000480!7.27e-07!626;UBERON:0002780!7.60e-07!41;UBERON:0001890!7.60e-07!41;UBERON:0006240!7.60e-07!41;UBERON:0003075!1.00e-06!86;UBERON:0007284!1.00e-06!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;9.00e-10;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.19e-35,114;UBERON:0002193,3.35e-13,108;UBERON:0002390,1.69e-12,98;UBERON:0003061,1.69e-12,98;UBERON:0002405,8.48e-11,93;UBERON:0002371,9.53e-11,76;UBERON:0001049,1.01e-09,56;UBERON:0005068,1.01e-09,56;UBERON:0006241,1.01e-09,56;UBERON:0007135,1.01e-09,56;UBERON:0001474,4.05e-09,82;UBERON:0004765,4.29e-09,90;UBERON:0000073,7.52e-09,53;UBERON:0002616,7.52e-09,53;UBERON:0003081,9.28e-09,203;UBERON:0001434,2.35e-08,100;UBERON:0003075,1.85e-07,82;UBERON:0007284,1.85e-07,82;UBERON:0002780,7.60e-07,41;UBERON:0001890,7.60e-07,41;UBERON:0003080,7.60e-07,41;UBERON:0006240,7.60e-07,41 | |||
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| ||
|short_description=p2@ITM2B | |||
}} | }} |
Latest revision as of 15:00, 17 September 2015
Short description: | p2@ITM2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ITM2B_5end |
Coexpression cluster: | C3376_Neutrophils_Eosinophils_chorionic_epididymis_clear_kidney_Whole |
Association with transcript: | -5bp_to_ENST00000378549_5end |
EntrezGene: | ITM2B |
HGNC: | 6174 |
UniProt: | Q5W0A2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.17e-17 | 72 |
defensive cell | 4.04e-14 | 48 |
phagocyte | 4.04e-14 | 48 |
myeloid lineage restricted progenitor cell | 2.30e-13 | 66 |
granulocyte monocyte progenitor cell | 4.29e-13 | 67 |
classical monocyte | 3.36e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.36e-12 | 42 |
monopoietic cell | 2.91e-11 | 59 |
monocyte | 2.91e-11 | 59 |
monoblast | 2.91e-11 | 59 |
promonocyte | 2.91e-11 | 59 |
macrophage dendritic cell progenitor | 7.31e-11 | 61 |
leukocyte | 6.06e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.19e-35 | 114 |
hemolymphoid system | 3.35e-13 | 108 |
hematopoietic system | 1.69e-12 | 98 |
blood island | 1.69e-12 | 98 |
immune system | 8.48e-11 | 93 |
bone marrow | 9.53e-11 | 76 |
neural tube | 1.01e-09 | 56 |
neural rod | 1.01e-09 | 56 |
future spinal cord | 1.01e-09 | 56 |
neural keel | 1.01e-09 | 56 |
bone element | 4.05e-09 | 82 |
skeletal element | 4.29e-09 | 90 |
regional part of nervous system | 7.52e-09 | 53 |
regional part of brain | 7.52e-09 | 53 |
lateral plate mesoderm | 9.28e-09 | 203 |
skeletal system | 2.35e-08 | 100 |
neural plate | 1.85e-07 | 82 |
presumptive neural plate | 1.85e-07 | 82 |
regional part of forebrain | 7.60e-07 | 41 |
forebrain | 7.60e-07 | 41 |
anterior neural tube | 7.60e-07 | 41 |
future forebrain | 7.60e-07 | 41 |