FFCP PHASE1:Hg19::chr13:44453688..44453795,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:44453688..44453795,+
|short_description=p1@LACC1
|description=CAGE_peak_1_at_LACC1_5end
|association_with_transcript=0bp_to_ENST00000425906_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=144811 | |EntrezGene=144811 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26789 | |HGNC=26789 | ||
|TSSclassifier=strong | |||
|UniProt=A2A3Z5 | |UniProt=A2A3Z5 | ||
|association_with_transcript=0bp_to_ENST00000425906_5end | |||
|cluster_id=chr13:44453688..44453795,+ | |||
|coexpression_cluster_id=C392 | |||
|description=CAGE_peak_1_at_LACC1_5end | |||
|id=chr13:44453688..44453795,+ | |||
|ontology_enrichment_celltype=CL:0000557!3.14e-27!71;CL:0002009!2.08e-26!65;CL:0000766!4.31e-26!76;CL:0002194!2.05e-25!63;CL:0000576!2.05e-25!63;CL:0000040!2.05e-25!63;CL:0000559!2.05e-25!63;CL:0002057!5.85e-25!42;CL:0000839!1.24e-24!70;CL:0000860!1.68e-21!45;CL:0000763!3.24e-16!112;CL:0000049!3.24e-16!112;CL:0000048!5.17e-10!430;CL:0000723!8.29e-10!436;CL:0000034!9.53e-09!444;CL:0000134!9.98e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.25e-20;33!CL:0002057;2.25e-20;33!CL:0000473;2.49e-20;39!CL:0000234;2.49e-20;39!CL:0000576;3.10e-16;48!CL:0000766;3.51e-13;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,4.67e-30,67;CL:0000473,1.30e-29,48;CL:0000234,1.30e-29,48;CL:0002009,2.52e-29,61;CL:0000766,1.18e-28,72;CL:0002194,2.75e-28,59;CL:0000576,2.75e-28,59;CL:0000040,2.75e-28,59;CL:0000559,2.75e-28,59;CL:0000839,1.92e-27,66;CL:0000860,9.69e-26,42;CL:0002057,9.69e-26,42;CL:0000763,5.23e-18,108;CL:0000049,5.23e-18,108;CL:0000048,2.10e-11,427;CL:0000723,2.61e-11,433;CL:0000034,2.92e-10,441;CL:0000134,5.94e-08,354;CL:0002320,6.52e-08,361;CL:0000738,4.83e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;5.64e-19;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.39e-25!167;UBERON:0002371!1.67e-24!80;UBERON:0004765!1.73e-24!101;UBERON:0001434!1.73e-24!101;UBERON:0001474!2.13e-23!86;UBERON:0002193!8.74e-19!112;UBERON:0002390!2.84e-18!102;UBERON:0003061!2.84e-18!102;UBERON:0002405!2.00e-17!115;UBERON:0003081!7.15e-12!216;UBERON:0000926!4.86e-11!448;UBERON:0004120!4.86e-11!448;UBERON:0006603!4.86e-11!448;UBERON:0000467!2.16e-10!625;UBERON:0000480!2.27e-10!626;UBERON:0000468!9.10e-09!659;UBERON:0000923!3.75e-08!604;UBERON:0005291!3.75e-08!604;UBERON:0006598!3.75e-08!604;UBERON:0002532!3.75e-08!604;UBERON:0002050!4.29e-08!605;UBERON:0005423!4.29e-08!605;UBERON:0000062!5.37e-07!511;UBERON:0000922!7.50e-07!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004765,1.48e-27,90;UBERON:0002204,1.74e-27,167;UBERON:0002371,1.93e-27,76;UBERON:0001434,6.76e-27,100;UBERON:0001474,2.78e-26,82;UBERON:0002405,3.13e-24,93;UBERON:0002193,2.27e-20,108;UBERON:0002390,2.81e-20,98;UBERON:0003061,2.81e-20,98;UBERON:0003081,3.38e-14,203;UBERON:0000926,1.38e-13,315;UBERON:0004120,1.38e-13,315;UBERON:0006603,1.38e-13,315;UBERON:0002050,2.83e-08,564;UBERON:0002384,9.50e-08,371;UBERON:0000923,1.17e-07,560;UBERON:0010316,1.17e-07,560;UBERON:0005291,1.17e-07,560;UBERON:0006598,1.17e-07,560;UBERON:0010317,1.17e-07,560;UBERON:0002532,1.17e-07,560;UBERON:0005423,2.16e-07,581;UBERON:0000922,8.79e-07,592 | |||
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| ||
|short_description=p1@LACC1 | |||
}} | }} |
Latest revision as of 10:40, 17 September 2015
Short description: | p1@LACC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LACC1_5end |
Coexpression cluster: | C392_Monocytederived_CD14_Macrophage_CD14CD16_Dendritic_Eosinophils_migratory |
Association with transcript: | 0bp_to_ENST00000425906_5end |
EntrezGene: | LACC1 |
HGNC: | 26789 |
UniProt: | A2A3Z5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 4.67e-30 | 67 |
defensive cell | 1.30e-29 | 48 |
phagocyte | 1.30e-29 | 48 |
macrophage dendritic cell progenitor | 2.52e-29 | 61 |
myeloid leukocyte | 1.18e-28 | 72 |
monopoietic cell | 2.75e-28 | 59 |
monocyte | 2.75e-28 | 59 |
monoblast | 2.75e-28 | 59 |
promonocyte | 2.75e-28 | 59 |
myeloid lineage restricted progenitor cell | 1.92e-27 | 66 |
classical monocyte | 9.69e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.69e-26 | 42 |
myeloid cell | 5.23e-18 | 108 |
common myeloid progenitor | 5.23e-18 | 108 |
multi fate stem cell | 2.10e-11 | 427 |
somatic stem cell | 2.61e-11 | 433 |
stem cell | 2.92e-10 | 441 |
mesenchymal cell | 5.94e-08 | 354 |
connective tissue cell | 6.52e-08 | 361 |
leukocyte | 4.83e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
skeletal element | 1.48e-27 | 90 |
musculoskeletal system | 1.74e-27 | 167 |
bone marrow | 1.93e-27 | 76 |
skeletal system | 6.76e-27 | 100 |
bone element | 2.78e-26 | 82 |
immune system | 3.13e-24 | 93 |
hemolymphoid system | 2.27e-20 | 108 |
hematopoietic system | 2.81e-20 | 98 |
blood island | 2.81e-20 | 98 |
lateral plate mesoderm | 3.38e-14 | 203 |
mesoderm | 1.38e-13 | 315 |
mesoderm-derived structure | 1.38e-13 | 315 |
presumptive mesoderm | 1.38e-13 | 315 |
embryonic structure | 2.83e-08 | 564 |
connective tissue | 9.50e-08 | 371 |
germ layer | 1.17e-07 | 560 |
germ layer / neural crest | 1.17e-07 | 560 |
embryonic tissue | 1.17e-07 | 560 |
presumptive structure | 1.17e-07 | 560 |
germ layer / neural crest derived structure | 1.17e-07 | 560 |
epiblast (generic) | 1.17e-07 | 560 |
developing anatomical structure | 2.16e-07 | 581 |
embryo | 8.79e-07 | 592 |