FFCP PHASE1:Hg19::chr6:73786620..73786627,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:73786620..73786627,+ | |||
|coexpression_cluster_id=C221 | |||
|description=CAGE_peak_at_chr6:73786620..73786627,+ | |description=CAGE_peak_at_chr6:73786620..73786627,+ | ||
|id=chr6:73786620..73786627,+ | |id=chr6:73786620..73786627,+ | ||
|ontology_enrichment_celltype=CL:0000082!1.84e-16!19;CL:0000322!1.85e-12!3 | |ontology_enrichment_celltype=CL:0000082!1.84e-16!19;CL:0000322!1.85e-12!3 | ||
|ontology_enrichment_celltype_v019=CL:0000322;2.93e-23;3!CL:0000082;4.91e-15;19!CL:0002202;1.08e-08;9!CL:0002632;1.08e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,2.62e-23,3;CL:0000082,4.91e-15,19;CL:0002202,1.04e-08,9;CL:0002632,1.04e-08,9 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.96e-10;29!UBERON:0001041;5.96e-10;30 | |||
|ontology_enrichment_disease=DOID:0050619!3.61e-34!1;DOID:1357!3.61e-34!1;DOID:3905!9.92e-34!9;DOID:0050615!1.58e-33!16;DOID:3908!2.08e-27!5;DOID:1324!1.28e-20!15;DOID:1325!5.35e-20!7;DOID:3904!5.35e-20!7;DOID:3910!5.48e-18!2;DOID:4929!1.07e-17!2;DOID:4556!2.59e-12!3;DOID:5409!1.22e-09!4 | |||
|ontology_enrichment_disease_v019=DOID:0050619;4.66e-66;1!DOID:1357;4.66e-66;1!DOID:1325;1.49e-38;7!DOID:3904;1.49e-38;7!DOID:0050615;7.83e-38;16!DOID:3910;4.27e-34;2!DOID:3905;2.66e-30;9!DOID:1324;1.04e-18;15!DOID:5409;8.00e-18;4!DOID:3908;1.50e-14;5 | |||
|ontology_enrichment_disease_v019_2=DOID:0050619,4.66e-66,1;DOID:1357,4.66e-66,1;DOID:1325,1.49e-38,7;DOID:3904,1.49e-38,7;DOID:0050615,7.83e-38,16;DOID:3910,3.61e-34,2;DOID:3905,2.66e-30,9;DOID:1324,1.04e-18,15;DOID:5409,8.69e-18,4;DOID:3908,1.40e-14,5 | |||
|ontology_enrichment_uberon=UBERON:0001764!3.61e-34!1;UBERON:0001825!3.61e-34!1;UBERON:0004913!7.06e-34!1;UBERON:0003703!7.06e-34!1;UBERON:0001174!7.06e-34!1;UBERON:0004914!7.06e-34!1;UBERON:0004903!5.48e-18!2;UBERON:0002173!5.48e-18!2;UBERON:0002186!5.48e-18!2;UBERON:0004802!1.84e-16!19;UBERON:0000115!1.84e-16!19;UBERON:0002048!2.49e-14!22;UBERON:0000117!2.49e-14!22;UBERON:0000171!2.49e-14!22;UBERON:0000170!2.49e-14!22;UBERON:0005597!2.49e-14!22;UBERON:0000118!2.49e-14!22;UBERON:0004821!1.85e-12!3;UBERON:0003215!1.85e-12!3;UBERON:0002299!1.85e-12!3;UBERON:0006524!1.85e-12!3;UBERON:0008874!1.85e-12!3;UBERON:0002169!1.85e-12!3;UBERON:0004894!1.85e-12!3;UBERON:0002771!3.24e-12!3;UBERON:0004807!1.99e-11!28;UBERON:0005178!1.53e-09!34;UBERON:0002224!1.53e-09!34;UBERON:0002394!1.57e-09!4;UBERON:0003928!1.57e-09!4;UBERON:0005181!2.73e-09!35;UBERON:0005153!7.95e-09!37;UBERON:0008947!1.30e-08!38;UBERON:0003258!1.30e-08!38;UBERON:0001004!6.28e-08!72;UBERON:0000072!3.12e-07!46;UBERON:0005911!5.27e-07!82;UBERON:0000466!5.41e-07!126;UBERON:0000200!9.49e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001764;4.66e-66;1!UBERON:0001825;4.66e-66;1!UBERON:0004903;4.27e-34;2!UBERON:0002173;4.27e-34;2!UBERON:0002186;4.27e-34;2!UBERON:0004821;2.93e-23;3!UBERON:0007499;2.93e-23;3!UBERON:0003215;2.93e-23;3!UBERON:0010368;2.93e-23;3!UBERON:0009911;2.93e-23;3!UBERON:0002299;2.93e-23;3!UBERON:0006524;2.93e-23;3!UBERON:0008874;2.93e-23;3!UBERON:0002169;2.93e-23;3!UBERON:0004894;2.93e-23;3!UBERON:0009856;8.00e-18;4!UBERON:0004802;4.91e-15;19!UBERON:0000115;4.91e-15;19!UBERON:0002048;3.77e-13;22!UBERON:0004807;3.77e-13;22!UBERON:0000117;3.77e-13;22!UBERON:0000171;3.77e-13;22!UBERON:0000170;3.77e-13;22!UBERON:0005178;1.20e-08;34!UBERON:0002224;1.20e-08;34!UBERON:0005181;2.14e-08;35!UBERON:0000065;5.41e-08;44!UBERON:0000058;5.93e-08;10!UBERON:0005911;4.32e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001764,4.66e-66,1;UBERON:0001825,4.66e-66,1;UBERON:0004903,3.61e-34,2;UBERON:0002173,3.61e-34,2;UBERON:0002186,3.61e-34,2;UBERON:0004821,2.62e-23,3;UBERON:0003215,2.62e-23,3;UBERON:0010368,2.62e-23,3;UBERON:0009911,2.62e-23,3;UBERON:0002299,2.62e-23,3;UBERON:0006524,2.62e-23,3;UBERON:0008874,2.62e-23,3;UBERON:0002169,2.62e-23,3;UBERON:0004894,2.62e-23,3;UBERON:0004802,4.91e-15,19;UBERON:0000115,4.91e-15,19;UBERON:0002048,3.77e-13,22;UBERON:0000117,3.77e-13,22;UBERON:0000171,3.77e-13,22;UBERON:0000170,3.77e-13,22;UBERON:0005597,3.77e-13,22;UBERON:0000118,3.77e-13,22;UBERON:0004807,1.40e-10,28;UBERON:0001004,4.40e-09,74;UBERON:0005178,6.54e-09,34;UBERON:0002224,6.54e-09,34;UBERON:0005181,1.09e-08,35;UBERON:0005153,2.82e-08,37;UBERON:0008947,4.36e-08,38;UBERON:0003258,4.36e-08,38;UBERON:0000072,9.72e-07,47;UBERON:0005157,9.72e-07,47 | |||
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|short_description=p@chr6:73786620..73786627,+ | |short_description=p@chr6:73786620..73786627,+ | ||
}} | }} |
Latest revision as of 03:03, 31 July 2015
Short description: | p@chr6:73786620..73786627, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:73786620..73786627, + |
Coexpression cluster: | C221_alveolar_Osteoblast_Myoblast_mesenchymal_liposarcoma_Smooth_hepatocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 2.62e-23 | 3 |
epithelial cell of lung | 4.91e-15 | 19 |
epithelial cell of tracheobronchial tree | 1.04e-08 | 9 |
epithelial cell of lower respiratory tract | 1.04e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
maxillary sinus | 4.66e-66 | 1 |
paranasal sinus | 4.66e-66 | 1 |
bronchoalveolar duct junction | 3.61e-34 | 2 |
alveolar duct | 3.61e-34 | 2 |
bronchiole | 3.61e-34 | 2 |
pulmonary alveolus epithelium | 2.62e-23 | 3 |
alveolus | 2.62e-23 | 3 |
pulmonary lobule | 2.62e-23 | 3 |
lobule | 2.62e-23 | 3 |
alveolus of lung | 2.62e-23 | 3 |
alveolar system | 2.62e-23 | 3 |
pulmonary acinus | 2.62e-23 | 3 |
alveolar sac | 2.62e-23 | 3 |
alveolar wall | 2.62e-23 | 3 |
respiratory tract epithelium | 4.91e-15 | 19 |
lung epithelium | 4.91e-15 | 19 |
lung | 3.77e-13 | 22 |
respiratory tube | 3.77e-13 | 22 |
respiration organ | 3.77e-13 | 22 |
pair of lungs | 3.77e-13 | 22 |
lung primordium | 3.77e-13 | 22 |
lung bud | 3.77e-13 | 22 |
respiratory system epithelium | 1.40e-10 | 28 |
respiratory system | 4.40e-09 | 74 |
thoracic cavity element | 6.54e-09 | 34 |
thoracic cavity | 6.54e-09 | 34 |
thoracic segment organ | 1.09e-08 | 35 |
epithelial bud | 2.82e-08 | 37 |
respiratory primordium | 4.36e-08 | 38 |
endoderm of foregut | 4.36e-08 | 38 |
segment of respiratory tract | 9.72e-07 | 47 |
epithelial fold | 9.72e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 4.66e-66 | 1 |
maxillary sinus cancer | 4.66e-66 | 1 |
bronchus cancer | 1.49e-38 | 7 |
bronchogenic carcinoma | 1.49e-38 | 7 |
respiratory system cancer | 7.83e-38 | 16 |
lung adenocarcinoma | 3.61e-34 | 2 |
lung carcinoma | 2.66e-30 | 9 |
lung cancer | 1.04e-18 | 15 |
lung small cell carcinoma | 8.69e-18 | 4 |
non-small cell lung carcinoma | 1.40e-14 | 5 |