FFCP PHASE1:Hg19::chr6:707779..707821,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:707779..707821,+ | |||
|coexpression_cluster_id=C391 | |||
|description=CAGE_peak_at_chr6:707779..707821,+ | |description=CAGE_peak_at_chr6:707779..707821,+ | ||
|id=chr6:707779..707821,+ | |id=chr6:707779..707821,+ | ||
|ontology_enrichment_celltype=CL:0002556!2.72e-24!6;CL:0002552!2.90e-11!5 | |ontology_enrichment_celltype=CL:0002556!2.72e-24!6;CL:0002552!2.90e-11!5 | ||
|ontology_enrichment_celltype_v019=CL:0002556;2.28e-58;6!CL:0002552;1.24e-18;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002556,2.45e-58,6;CL:0002552,1.04e-18,5;CL:0000057,1.96e-10,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4556;8.31e-09;3 | |||
|ontology_enrichment_disease_v019_2=DOID:4556,8.31e-09,3 | |||
|ontology_enrichment_uberon=UBERON:0001758!2.72e-24!6;UBERON:0003672!2.72e-24!6;UBERON:0000165!6.86e-19!28;UBERON:0000930!6.86e-19!28;UBERON:0000075!1.47e-15!13;UBERON:0005944!1.47e-15!13;UBERON:0004288!1.47e-15!13;UBERON:0003089!1.47e-15!13;UBERON:0000078!8.08e-15!18;UBERON:0003129!3.74e-13!11;UBERON:0001444!2.33e-12!48;UBERON:0000341!3.13e-12!2;UBERON:0001007!3.12e-10!155;UBERON:0001555!3.12e-10!155;UBERON:0007026!3.12e-10!155;UBERON:0004119!4.84e-09!169;UBERON:0000925!4.84e-09!169;UBERON:0006595!4.84e-09!169;UBERON:0000153!9.03e-09!129;UBERON:0007811!9.03e-09!129;UBERON:0001828!3.39e-07!8;UBERON:0000033!5.24e-07!123;UBERON:0001154!6.76e-07!1;UBERON:0001153!6.76e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001758;2.28e-58;6!UBERON:0003672;2.28e-58;6!UBERON:0003129;3.89e-50;7!UBERON:0000165;4.26e-38;28!UBERON:0011137;3.77e-32;11!UBERON:0010323;3.77e-32;11!UBERON:0000075;2.75e-22;16!UBERON:0001444;1.99e-18;48!UBERON:0007811;2.30e-16;52!UBERON:0000033;5.49e-14;50!UBERON:0000153;8.87e-14;54!UBERON:0001828;4.94e-12;8!UBERON:0001434;1.21e-10;36!UBERON:0001555;1.28e-10;54!UBERON:0001723;1.30e-08;3!UBERON:0001033;1.30e-08;3!UBERON:0003729;9.20e-08;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001758,2.45e-58,6;UBERON:0003672,2.45e-58,6;UBERON:0003129,4.15e-50,7;UBERON:0000165,8.91e-37,29;UBERON:0000930,8.91e-37,29;UBERON:0010323,3.92e-32,11;UBERON:0011137,2.24e-25,14;UBERON:0000075,2.83e-22,16;UBERON:0001444,8.55e-22,49;UBERON:0000033,4.53e-19,56;UBERON:0000153,3.20e-17,62;UBERON:0007811,3.20e-17,62;UBERON:0001828,4.42e-12,8;UBERON:0003102,9.55e-11,99;UBERON:0000166,1.12e-09,22;UBERON:0001007,1.94e-09,145;UBERON:0001555,1.94e-09,145;UBERON:0007026,1.94e-09,145;UBERON:0001723,1.51e-08,3;UBERON:0001033,1.51e-08,3;UBERON:0010056,1.51e-08,3;UBERON:0004119,1.57e-08,160;UBERON:0000925,1.57e-08,160;UBERON:0006595,1.57e-08,160;UBERON:0003729,8.59e-08,13 | |||
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|short_description=p@chr6:707779..707821,+ | |short_description=p@chr6:707779..707821,+ | ||
}} | }} |
Latest revision as of 02:53, 31 July 2015
Short description: | p@chr6:707779..707821, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:707779..707821, + |
Coexpression cluster: | C391_large_bronchioalveolar_fibrosarcoma_lung_pancreatic_giant_testis |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of periodontium | 2.45e-58 | 6 |
fibroblast of gingiva | 1.04e-18 | 5 |
fibroblast | 1.96e-10 | 76 |
Ontology term | p-value | n |
---|---|---|
periodontium | 2.45e-58 | 6 |
dentition | 2.45e-58 | 6 |
skull | 4.15e-50 | 7 |
mouth | 8.91e-37 | 29 |
stomodeum | 8.91e-37 | 29 |
cranial skeletal system | 3.92e-32 | 11 |
axial skeletal system | 2.24e-25 | 14 |
subdivision of skeletal system | 2.83e-22 | 16 |
subdivision of head | 8.55e-22 | 49 |
head | 4.53e-19 | 56 |
anterior region of body | 3.20e-17 | 62 |
craniocervical region | 3.20e-17 | 62 |
gingiva | 4.42e-12 | 8 |
surface structure | 9.55e-11 | 99 |
oral opening | 1.12e-09 | 22 |
digestive system | 1.94e-09 | 145 |
digestive tract | 1.94e-09 | 145 |
primitive gut | 1.94e-09 | 145 |
tongue | 1.51e-08 | 3 |
gustatory system | 1.51e-08 | 3 |
future tongue | 1.51e-08 | 3 |
endoderm-derived structure | 1.57e-08 | 160 |
endoderm | 1.57e-08 | 160 |
presumptive endoderm | 1.57e-08 | 160 |
mouth mucosa | 8.59e-08 | 13 |
Ontology term | p-value | n |
---|---|---|
lung large cell carcinoma | 8.31e-09 | 3 |