FFCP PHASE1:Hg19::chr6:32936261..32936305,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3108 | |EntrezGene=3108 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4934 | |HGNC=4934 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-40bp_to_ENST00000464392_5end | |association_with_transcript=-40bp_to_ENST00000464392_5end | ||
|cluster_id=chr6:32936261..32936305,- | |||
|description=CAGE_peak_2_at_HLA-DMA_5end | |description=CAGE_peak_2_at_HLA-DMA_5end | ||
|id=chr6:32936261..32936305,- | |id=chr6:32936261..32936305,- | ||
|ontology_enrichment_celltype=CL:0000738!5.12e-12!140;CL:0000988!6.74e-10!182;CL:0002031!1.10e-09!124;CL:0000838!2.68e-09!52;CL:0000542!3.23e-09!53;CL:0000051!3.23e-09!53;CL:0002087!8.12e-09!119;CL:0000037!1.08e-08!172;CL:0000566!1.08e-08!172;CL:0002032!1.43e-08!165;CL:0000837!1.43e-08!165;CL:0000791!1.82e-07!18;CL:0000789!1.82e-07!18;CL:0002420!1.82e-07!18;CL:0002419!1.82e-07!18;CL:0000790!1.82e-07!18;CL:0000625!9.08e-07!11 | |ontology_enrichment_celltype=CL:0000738!5.12e-12!140;CL:0000988!6.74e-10!182;CL:0002031!1.10e-09!124;CL:0000838!2.68e-09!52;CL:0000542!3.23e-09!53;CL:0000051!3.23e-09!53;CL:0002087!8.12e-09!119;CL:0000037!1.08e-08!172;CL:0000566!1.08e-08!172;CL:0002032!1.43e-08!165;CL:0000837!1.43e-08!165;CL:0000791!1.82e-07!18;CL:0000789!1.82e-07!18;CL:0002420!1.82e-07!18;CL:0002419!1.82e-07!18;CL:0000790!1.82e-07!18;CL:0000625!9.08e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.42e-07;18!CL:0000789;1.42e-07;18!CL:0002419;1.42e-07;18!CL:0000625;2.07e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,8.11e-11,136;CL:0000988,4.43e-10,177;CL:0000838,4.31e-09,52;CL:0000542,5.13e-09,53;CL:0000051,5.13e-09,53;CL:0000037,2.19e-08,168;CL:0002031,2.41e-08,120;CL:0002032,3.25e-08,161;CL:0000837,3.25e-08,161;CL:0000791,6.50e-08,18;CL:0000789,6.50e-08,18;CL:0002420,6.50e-08,18;CL:0002419,6.50e-08,18;CL:0000790,6.50e-08,18;CL:0002087,9.28e-08,115;CL:0000625,1.78e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.42e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.13e-19!115;UBERON:0001049!4.77e-09!57;UBERON:0005068!4.77e-09!57;UBERON:0006241!4.77e-09!57;UBERON:0007135!4.77e-09!57;UBERON:0002616!7.15e-08!59;UBERON:0003075!9.60e-07!86;UBERON:0007284!9.60e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.37e-20,114;UBERON:0001049,6.15e-09,56;UBERON:0005068,6.15e-09,56;UBERON:0006241,6.15e-09,56;UBERON:0007135,6.15e-09,56;UBERON:0000073,8.66e-09,53;UBERON:0002616,8.66e-09,53;UBERON:0003075,5.31e-07,82;UBERON:0007284,5.31e-07,82 | |||
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| ||
|short_description=p2@HLA-DMA | |short_description=p2@HLA-DMA | ||
}} | }} |
Latest revision as of 04:35, 18 September 2015
Short description: | p2@HLA-DMA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HLA-DMA_5end |
Coexpression cluster: | NA |
Association with transcript: | -40bp_to_ENST00000464392_5end |
EntrezGene: | HLA-DMA |
HGNC: | 4934 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 8.11e-11 | 136 |
hematopoietic cell | 4.43e-10 | 177 |
lymphoid lineage restricted progenitor cell | 4.31e-09 | 52 |
lymphocyte | 5.13e-09 | 53 |
common lymphoid progenitor | 5.13e-09 | 53 |
hematopoietic stem cell | 2.19e-08 | 168 |
hematopoietic lineage restricted progenitor cell | 2.41e-08 | 120 |
hematopoietic oligopotent progenitor cell | 3.25e-08 | 161 |
hematopoietic multipotent progenitor cell | 3.25e-08 | 161 |
mature alpha-beta T cell | 6.50e-08 | 18 |
alpha-beta T cell | 6.50e-08 | 18 |
immature T cell | 6.50e-08 | 18 |
mature T cell | 6.50e-08 | 18 |
immature alpha-beta T cell | 6.50e-08 | 18 |
nongranular leukocyte | 9.28e-08 | 115 |
CD8-positive, alpha-beta T cell | 1.78e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.37e-20 | 114 |
neural tube | 6.15e-09 | 56 |
neural rod | 6.15e-09 | 56 |
future spinal cord | 6.15e-09 | 56 |
neural keel | 6.15e-09 | 56 |
regional part of nervous system | 8.66e-09 | 53 |
regional part of brain | 8.66e-09 | 53 |
neural plate | 5.31e-07 | 82 |
presumptive neural plate | 5.31e-07 | 82 |